mRNA_S-dermatodea_contig84602.16631.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84602.16631.1
Unique NamemRNA_S-dermatodea_contig84602.16631.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 9.610e-27
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHPEV 249
            L+S++W++ EQ L AR +G +VIQDNTCLTNRYN K+ LF+GVD+ENKT VFAQGFFS+E T +F +A   ++ ICGGHP+V
Sbjct:   64 LRSIMWASPEQILLARTYGGVVIQDNTCLTNRYNNKLCLFVGVDSENKTQVFAQGFFSNESTEAFDFANKFFLDICGGHPKV 145          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.090e-25
Identity = 57/119 (47.90%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNR------------------------------------YNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHPEV 249
            RLK V WST +Q++ ARQ+G IV+QDNT LTNR                                    Y M  MLFIGVD+ENKT+VFAQGFFSD+ + ++ WAL HY TICGG PEV
Sbjct:   84 RLKHVFWSTGQQQVFARQWGGIVLQDNTALTNRVLVLIRLIFATGKMSDEHPVRLRFIQPRAFASRSCRYGMHFMLFIGVDSENKTVVFAQGFFSDQSSDTYQWALKHYCTICGGQPEV 202          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 5.560e-19
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
            L+S++W++ EQ + AR +G IVIQDNTCL NRY+ K+ LF+GVD+ENKT +FAQG  S+EQ +SF +A    + I GG
Sbjct:  837 LRSIMWASPEQIMLARTYGGIVIQDNTCLINRYDFKLCLFVGVDSENKTGIFAQGLLSNEQISSFDFANRFLLEIRGG 914          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6I9SVE1_SESIN (Protein FAR1-RELATED SEQUENCE n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SVE1_SESIN)

HSP 1 Score: 69.3 bits (168), Expect = 1.080e-11
Identity = 29/81 (35.80%), Postives = 46/81 (56.79%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
            RL++V W  A  R A   FG ++  DNTCL+NRY + ++ F+GV+   + ++   G  + E   S++W    +VT   GHP
Sbjct:  273 RLRNVFWVDARARAANSYFGDVIFFDNTCLSNRYEIPLVAFVGVNHHGQPVLLGCGLLASETMESYIWLFKAWVTCTSGHP 353          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JP13_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP13_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG---HPEVSRQETRTWC 276
            RL +V W+TA+Q+  A +FG  +  D T   NRY   ++LF+GVD EN++ +  QG    E   +F W L  Y +  GG    P++ +    T C
Sbjct:  255 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGGWERRPKMEQISAGTKC 349          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A835DCY8_9MAGN (Protein FAR1-RELATED SEQUENCE n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A835DCY8_9MAGN)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGH 240
            L++V W+ A  R A   FG I++ D TCLTN+Y+M ++ F+GV+   ++++   G  +DE   SF+W    ++    GH
Sbjct:  250 LRNVFWADARSRAACAYFGDIIMLDTTCLTNKYDMPLVYFLGVNHHGQSVLLGCGLLADETRESFIWLFKAWLKSVSGH 328          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5KG54_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG54_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.820e-11
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
            RL +V W+TA+Q+  A +FG  +  D T   NRY   ++LF+GVD EN++ +  QG    E   +F W L  Y +  GG
Sbjct:  288 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYGCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGG 366          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A6H5JGK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.850e-11
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGG 237
            RL +V W+TA+Q+  A +FG  +  D T   NRY   ++LF+GVD EN++ +  QG    E   +F W L  Y +  GG
Sbjct:  986 RLVNVFWATADQQERAARFGGCIQMDTTVFANRYRCPVLLFVGVDDENRSCILGQGLLRSECAETFEWFLTQYESAAGG 1064          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: J3LUP5_ORYBR (Protein FAR1-RELATED SEQUENCE n=6 Tax=Oryza TaxID=4527 RepID=J3LUP5_ORYBR)

HSP 1 Score: 65.9 bits (159), Expect = 1.800e-10
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    4 LKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
            L+SV W+ +  R A + F   V  D TCL N++++ ++LF+GV+   + ++   G  SDE T SFLW L  ++T   G P
Sbjct:  206 LRSVFWADSRSRAAHQYFNDAVWIDTTCLRNKFDIPLVLFLGVNHHGELVLLGCGLLSDESTESFLWLLKSWLTCMKGWP 285          
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Match: A0A2G5FA70_AQUCA (Protein FAR1-RELATED SEQUENCE n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5FA70_AQUCA)

HSP 1 Score: 64.7 bits (156), Expect = 4.550e-10
Identity = 27/81 (33.33%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    1 RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKTIVFAQGFFSDEQTTSFLWALDHYVTICGGHP 243
            R+++V W+  + R+    FG +V  D TCLTN+Y  K++ F+GV+   ++++      +DE   SFLW    ++T+  G P
Sbjct:  260 RMRNVFWADTKARVDYAHFGDVVTFDTTCLTNKYETKIVSFVGVNHHGQSVLLGCALVTDETKASFLWVFRTWLTVMQGGP 340          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84602.16631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLF6_ECTSI9.610e-2762.20Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5JEJ0_9PHAE6.090e-2547.90SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE5.560e-1955.13SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6I9SVE1_SESIN1.080e-1135.80Protein FAR1-RELATED SEQUENCE n=2 Tax=Sesamum indi... [more]
A0A6H5JP13_9PHAE2.040e-1135.79SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835DCY8_9MAGN2.040e-1135.44Protein FAR1-RELATED SEQUENCE n=1 Tax=Tetracentron... [more]
A0A6H5KG54_9PHAE3.820e-1139.24SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JGK0_9PHAE3.850e-1139.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
J3LUP5_ORYBR1.800e-1037.50Protein FAR1-RELATED SEQUENCE n=6 Tax=Oryza TaxID=... [more]
A0A2G5FA70_AQUCA4.550e-1033.33Protein FAR1-RELATED SEQUENCE n=1 Tax=Aquilegia co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84602contigS-dermatodea_contig84602:6..436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.9055235-CDS-S-dermatodea_contig84602:5..1031622925344.9055235-CDS-S-dermatodea_contig84602:5..103Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84602 6..103 +
1694079870.308321-CDS-S-dermatodea_contig84602:5..1031694079870.308321-CDS-S-dermatodea_contig84602:5..103Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84602 6..103 +
1622925344.9182603-CDS-S-dermatodea_contig84602:246..4361622925344.9182603-CDS-S-dermatodea_contig84602:246..436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84602 247..436 +
1694079870.3214388-CDS-S-dermatodea_contig84602:246..4361694079870.3214388-CDS-S-dermatodea_contig84602:246..436Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84602 247..436 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84602.16631.1prot_S-dermatodea_contig84602.16631.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84602 6..436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84602.16631.1

>prot_S-dermatodea_contig84602.16631.1 ID=prot_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
RLKSVIWSTAEQRLAARQFGHIVIQDNTCLTNRYNMKMMLFIGVDAENKT
IVFAQGFFSDEQTTSFLWALDHYVTICGGHPEVSRQETRTWCVHVS
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mRNA from alignment at S-dermatodea_contig84602:6..436+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84602.16631.1 ID=mRNA_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=431bp|location=Sequence derived from alignment at S-dermatodea_contig84602:6..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTGAAGTCCGTCATTTGGTCTACTGCCGAGCAGCGACTAGCGGCCCG ACAGTTTGGACACATCGTTATTCAAGACAACACCTGCCTCACAAACAGGT GTGTGTGCGCGCTCAAAGGTTGCAGTGGGGTCCGACACTGCGCCCTAACG TTTACACACTACGTGCAACAAAATATAGTGTTAGTTTAAGTGAATCGATG AGGATTTCTCACTCGAATATTTTGTAGTGTGTCTGCTGCAGGTATAATAT GAAGATGATGTTGTTCATCGGTGTGGACGCGGAAAACAAGACAATAGTGT TCGCTCAGGGATTCTTCTCCGATGAGCAGACGACCTCATTCTTGTGGGCA TTGGATCACTACGTCACAATATGTGGGGGGCACCCGGAGGTGAGTCGTCA AGAGACCAGAACATGGTGTGTGCATGTGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84602:6..436+

>mRNA_S-dermatodea_contig84602.16631.1 ID=mRNA_S-dermatodea_contig84602.16631.1|Name=mRNA_S-dermatodea_contig84602.16631.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig84602:6..436+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGACTGAAGTCCGTCATTTGGTCTACTGCCGAGCAGCGACTAGCGGCCCG
ACAGTTTGGACACATCGTTATTCAAGACAACACCTGCCTCACAAACAGCG
ACTGAAGTCCGTCATTTGGTCTACTGCCGAGCAGCGACTAGCGGCCCGAC
AGTTTGGACACATCGTTATTCAAGACAACACCTGCCTCACAAACAGGTAT
AATATGAAGATGATGTTGTTCATCGGTGTGGACGCGGAAAACAAGACAAT
AGTGTTCGCTCAGGGATTCTTCTCCGATGAGCAGACGACCTCATTCTTGT
GGGCATTGGATCACTACGTCACAATATGTGGGGGGCACCCGGAGGTGAGT
CGTCAAGAGACCAGAACATGGTGTGTGCATGTGTCGGTATAATATGAAGA
TGATGTTGTTCATCGGTGTGGACGCGGAAAACAAGACAATAGTGTTCGCT
CAGGGATTCTTCTCCGATGAGCAGACGACCTCATTCTTGTGGGCATTGGA
TCACTACGTCACAATATGTGGGGGGCACCCGGAGGTGAGTCGTCAAGAGA
CCAGAACATGGTGTGTGCATGTGTCG
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