mRNA_S-dermatodea_contig846.16628.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig846.16628.1
Unique NamemRNA_S-dermatodea_contig846.16628.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig846.16628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig846contigS-dermatodea_contig846:4912..5367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.818943-CDS-S-dermatodea_contig846:4911..53671622925344.818943-CDS-S-dermatodea_contig846:4911..5367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig846 4912..5367 +
1694079870.2648816-CDS-S-dermatodea_contig846:4911..53671694079870.2648816-CDS-S-dermatodea_contig846:4911..5367Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig846 4912..5367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig846.16628.1prot_S-dermatodea_contig846.16628.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig846 4912..5367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig846.16628.1

>prot_S-dermatodea_contig846.16628.1 ID=prot_S-dermatodea_contig846.16628.1|Name=mRNA_S-dermatodea_contig846.16628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=152bp
HAAWIRYAAAKHKTNDNQGCKPHSRNRHKYAKNESDRLSRRLLLPPNTHT
QTDTHNSAPRTLPLPSSALPLPSSALPLPSKTIRPPATLKPLHEEISSTC
NTHVNPPLRLILPGYTTTFARSLRQRGRHKAQKTNHEKKNPARTQGVSSP
SL
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mRNA from alignment at S-dermatodea_contig846:4912..5367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig846.16628.1 ID=mRNA_S-dermatodea_contig846.16628.1|Name=mRNA_S-dermatodea_contig846.16628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig846:4912..5367+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCTGCATGGATCCGGTATGCAGCCGCCAAACACAAGACAAACGACAA
CCAGGGATGTAAACCTCACAGCAGAAACAGGCACAAATACGCAAAGAACG
AATCCGATCGTCTCTCCCGTAGGCTTCTCCTCCCTCCCAATACGCACACA
CAAACAGACACGCACAACTCCGCGCCACGCACTCTTCCGTTACCATCAAG
CGCTCTCCCGTTACCATCAAGCGCTCTCCCGTTACCATCAAAAACCATTC
GCCCACCCGCTACACTAAAACCGTTGCACGAGGAGATATCTTCCACTTGT
AACACCCATGTCAACCCACCACTACGTTTGATTCTCCCCGGCTATACTAC
TACCTTTGCGCGTTCCCTTCGCCAACGGGGAAGACACAAAGCGCAAAAAA
CAAACCACGAAAAAAAAAATCCGGCACGCACGCAGGGCGTGTCCAGTCCC
TCCTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig846:4912..5367+

>mRNA_S-dermatodea_contig846.16628.1 ID=mRNA_S-dermatodea_contig846.16628.1|Name=mRNA_S-dermatodea_contig846.16628.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at S-dermatodea_contig846:4912..5367+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACGCTGCATGGATCCGGTATGCAGCCGCCAAACACAAGACAAACGACAA
CCAGGGATGTAAACCTCACAGCAGAAACAGGCACAAATACGCAAAGAACG
AATCCGATCGTCTCTCCCGTAGGCTTCTCCTCCCTCCCAATACGCACACA
CAAACAGACACGCACAACTCCGCGCCACGCACTCTTCCGTTACCATCAAG
CGCTCTCCCGTTACCATCAAGCGCTCTCCCGTTACCATCAAAAACCATTC
GCCCACCCGCTACACTAAAACCGTTGCACGAGGAGATATCTTCCACTTGT
AACACCCATGTCAACCCACCACTACGTTTGATTCTCCCCGGCTATACTAC
TACCTTTGCGCGTTCCCTTCGCCAACGGGGAAGACACAAAGCGCAAAAAA
CAAACCACGAAAAAAAAAATCCGGCACGCACGCAGGGCGTGTCCAGTCCC
TCCTTGCACGCTGCATGGATCCGGTATGCAGCCGCCAAACACAAGACAAA
CGACAACCAGGGATGTAAACCTCACAGCAGAAACAGGCACAAATACGCAA
AGAACGAATCCGATCGTCTCTCCCGTAGGCTTCTCCTCCCTCCCAATACG
CACACACAAACAGACACGCACAACTCCGCGCCACGCACTCTTCCGTTACC
ATCAAGCGCTCTCCCGTTACCATCAAGCGCTCTCCCGTTACCATCAAAAA
CCATTCGCCCACCCGCTACACTAAAACCGTTGCACGAGGAGATATCTTCC
ACTTGTAACACCCATGTCAACCCACCACTACGTTTGATTCTCCCCGGCTA
TACTACTACCTTTGCGCGTTCCCTTCGCCAACGGGGAAGACACAAAGCGC
AAAAAACAAACCACGAAAAAAAAAATCCGGCACGCACGCAGGGCGTGTCC
AGTCCCTCCTTG
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