mRNA_S-dermatodea_contig84594.16627.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84594.16627.1
Unique NamemRNA_S-dermatodea_contig84594.16627.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84594.16627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84594contigS-dermatodea_contig84594:93..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size335
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.7346306-CDS-S-dermatodea_contig84594:92..4251622925344.7346306-CDS-S-dermatodea_contig84594:92..425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84594 93..425 +
1694079870.2237623-CDS-S-dermatodea_contig84594:92..4251694079870.2237623-CDS-S-dermatodea_contig84594:92..425Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84594 93..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84594.16627.1prot_S-dermatodea_contig84594.16627.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84594 93..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84594.16627.1

>prot_S-dermatodea_contig84594.16627.1 ID=prot_S-dermatodea_contig84594.16627.1|Name=mRNA_S-dermatodea_contig84594.16627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
PSYGDILLGPWVGRPPHSRGLNESSSQCSLQHWVSPHPTLTEKQTGTQKR
SCALGNKPGWSLNSMVEFSYFICSCVCVKNLSLVFFSSIGPGFFCGASSW
QQLYIPVSYQN
back to top

mRNA from alignment at S-dermatodea_contig84594:93..426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84594.16627.1 ID=mRNA_S-dermatodea_contig84594.16627.1|Name=mRNA_S-dermatodea_contig84594.16627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=334bp|location=Sequence derived from alignment at S-dermatodea_contig84594:93..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTCCTATGGGGACATACTCTTGGGTCCTTGGGTTGGCCGCCCGCCGCA
TTCGCGTGGGCTAAACGAGTCTTCCTCCCAGTGTTCGCTACAACATTGGG
TTTCCCCCCACCCCACCCTTACTGAAAAACAAACGGGCACACAGAAACGT
AGCTGTGCACTTGGAAACAAGCCTGGTTGGTCACTCAATAGCATGGTCGA
ATTCTCGTATTTTATTTGCTCGTGTGTGTGTGTCAAAAACTTGTCCCTTG
TTTTTTTTTCGAGCATCGGTCCCGGTTTTTTTTGCGGCGCGAGTTCATGG
CAGCAGCTCTACATACCAGTATCATACCAAAATT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig84594:93..426+

>mRNA_S-dermatodea_contig84594.16627.1 ID=mRNA_S-dermatodea_contig84594.16627.1|Name=mRNA_S-dermatodea_contig84594.16627.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig84594:93..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCTCCTATGGGGACATACTCTTGGGTCCTTGGGTTGGCCGCCCGCCGCA
TTCGCGTGGGCTAAACGAGTCTTCCTCCCAGTGTTCGCTACAACATTGGG
TTTCCCCCCACCCCACCCTTACTGAAAAACAAACGGGCACACAGAAACGT
AGCTGTGCACTTGGAAACAAGCCTGGTTGGTCACTCAATAGCATGGTCGA
ATTCTCGTATTTTATTTGCTCGTGTGTGTGTGTCAAAAACTTGTCCCTTG
TTTTTTTTTCGAGCATCGGTCCCGGTTTTTTTTGCGGCGCGAGTTCATGG
CAGCAGCTCTACATACCAGTATCATACCAAAATCCCTCCTATGGGGACAT
ACTCTTGGGTCCTTGGGTTGGCCGCCCGCCGCATTCGCGTGGGCTAAACG
AGTCTTCCTCCCAGTGTTCGCTACAACATTGGGTTTCCCCCCACCCCACC
CTTACTGAAAAACAAACGGGCACACAGAAACGTAGCTGTGCACTTGGAAA
CAAGCCTGGTTGGTCACTCAATAGCATGGTCGAATTCTCGTATTTTATTT
GCTCGTGTGTGTGTGTCAAAAACTTGTCCCTTGTTTTTTTTTCGAGCATC
GGTCCCGGTTTTTTTTGCGGCGCGAGTTCATGGCAGCAGCTCTACATACC
AGTATCATACCAAAAT
back to top