mRNA_S-dermatodea_contig84550.16625.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84550.16625.1
Unique NamemRNA_S-dermatodea_contig84550.16625.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84550.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84550contigS-dermatodea_contig84550:12..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size699
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.584108-CDS-S-dermatodea_contig84550:11..3921622925344.584108-CDS-S-dermatodea_contig84550:11..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84550 12..392 +
1694079870.1451015-CDS-S-dermatodea_contig84550:11..3921694079870.1451015-CDS-S-dermatodea_contig84550:11..392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84550 12..392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.5960264-UTR-S-dermatodea_contig84550:392..7081622925344.5960264-UTR-S-dermatodea_contig84550:392..708Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84550 393..708 +
1694079870.1539404-UTR-S-dermatodea_contig84550:392..7081694079870.1539404-UTR-S-dermatodea_contig84550:392..708Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84550 393..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84550.16625.1prot_S-dermatodea_contig84550.16625.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84550 12..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84550.16625.1

>prot_S-dermatodea_contig84550.16625.1 ID=prot_S-dermatodea_contig84550.16625.1|Name=mRNA_S-dermatodea_contig84550.16625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
KALLDSTESAAILPDTRDRLGSALRTAPRLDTLTGRDEVLAKKPAERLTP
ETGKTTGAANGSADDETRRSKIRGKLVLLSTTESQTDLLCASGTERILIL
FSLCWCNSVSLTTPKTIDCCTNVLVT*
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mRNA from alignment at S-dermatodea_contig84550:12..708+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84550.16625.1 ID=mRNA_S-dermatodea_contig84550.16625.1|Name=mRNA_S-dermatodea_contig84550.16625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=697bp|location=Sequence derived from alignment at S-dermatodea_contig84550:12..708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGCCCTACTCGACTCGACGGAATCCGCCGCAATCTTACCCGACACACG
AGATCGGTTGGGAAGCGCTCTACGTACTGCACCTCGTTTAGACACGCTCA
CGGGACGTGACGAAGTACTAGCCAAAAAACCAGCGGAACGCTTAACTCCA
GAAACAGGAAAAACAACAGGCGCGGCCAATGGCAGCGCTGACGACGAGAC
CCGACGGTCTAAAATACGAGGCAAACTAGTGCTACTTTCAACAACAGAAT
CGCAGACCGATTTGTTGTGCGCAAGCGGTACGGAGAGAATTTTAATTCTC
TTCTCGTTGTGCTGGTGTAATAGTGTCAGTTTGACTACACCAAAAACCAT
AGATTGCTGCACCAACGTACTGGTGACGTGAGGATTTCAGACGGGTTTTG
GTCTATCATACCTCATCACTTGGAAGAAGAGACACAACGAAAAATACCCG
CTGTATAAATGGGACATTCTAAAATAGGTTGTTAAAACCCTTGGGGCTAG
ACTTTGCGTTCCACTACCTACTTGATAGGCGCTTTAGGCCGTAGACGTCT
GCATGGTGACGGGAACGATACGTGTGGCAGCTGCTACTGCCCTGCTGTAG
TGTGGCGGGGAATAACGCAAAAAGTTTCCTCTGAAAATCGGCGGCGTGGG
CGGCGCATTTAAAAACCGATGATTATATGATACTTGTGTAGTGCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84550:12..708+

>mRNA_S-dermatodea_contig84550.16625.1 ID=mRNA_S-dermatodea_contig84550.16625.1|Name=mRNA_S-dermatodea_contig84550.16625.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig84550:12..708+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAGCCCTACTCGACTCGACGGAATCCGCCGCAATCTTACCCGACACACG
AGATCGGTTGGGAAGCGCTCTACGTACTGCACCTCGTTTAGACACGCTCA
CGGGACGTGACGAAGTACTAGCCAAAAAACCAGCGGAACGCTTAACTCCA
GAAACAGGAAAAACAACAGGCGCGGCCAATGGCAGCGCTGACGACGAGAC
CCGACGGTCTAAAATACGAGGCAAACTAGTGCTACTTTCAACAACAGAAT
CGCAGACCGATTTGTTGTGCGCAAGCGGTACGGAGAGAATTTTAATTCTC
TTCTCGTTGTGCTGGTGTAATAGTGTCAGTTTGACTACACCAAAAACCAT
AGATTGCTGCACCAACGTACTGGTGACGTGAAAAGCCCTACTCGACTCGA
CGGAATCCGCCGCAATCTTACCCGACACACGAGATCGGTTGGGAAGCGCT
CTACGTACTGCACCTCGTTTAGACACGCTCACGGGACGTGACGAAGTACT
AGCCAAAAAACCAGCGGAACGCTTAACTCCAGAAACAGGAAAAACAACAG
GCGCGGCCAATGGCAGCGCTGACGACGAGACCCGACGGTCTAAAATACGA
GGCAAACTAGTGCTACTTTCAACAACAGAATCGCAGACCGATTTGTTGTG
CGCAAGCGGTACGGAGAGAATTTTAATTCTCTTCTCGTTGTGCTGGTGTA
ATAGTGTCAGTTTGACTACACCAAAAACCATAGATTGCTGCACCAACGTA
CTGGTGACGTGA
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