mRNA_S-dermatodea_contig8454.16624.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8454.16624.1
Unique NamemRNA_S-dermatodea_contig8454.16624.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: D7G3L9_ECTSI (Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L9_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 1.440e-141
Identity = 219/265 (82.64%), Postives = 235/265 (88.68%), Query Frame = 1 
Query:  172 GISTADGGRGAQLAARVDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFDTVARLRQKQGFVREGDIPSLNRWVGETG 966
            G++   GG GA  A RVDAVV+GAGQAGLSVAYHLQRAGGLR VTLDANQ EAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPST EMAMYMEEYE VMKLNVVRPV VTGV+RT MGTFLVETDCLLGGT ARWEARTVISAAGTH +PVWPRLPG + FRG QIHSSQYR A+DFRG +VAVVG+GNSGAQILAEVS  G+A S++WSTL  PSFLP+GLSGKEIFDTVARLRQKQGFVRE DIPSL+  + + G
Sbjct:   58 GMANGQGGGGAG-ATRVDAVVVGAGQAGLSVAYHLQRAGGLRVVTLDANQ-EAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTGEMAMYMEEYESVMKLNVVRPVNVTGVSRTPMGTFLVETDCLLGGTVARWEARTVISAAGTHASPVWPRLPGWETFRGTQIHSSQYRFADDFRGKKVAVVGSGNSGAQILAEVSAPGVASSTLWSTLTAPSFLPMGLSGKEIFDTVARLRQKQGFVREEDIPSLHSIIMQPG 320
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A1E4GUP9_9CAUL (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GUP9_9CAUL)

HSP 1 Score: 187 bits (475), Expect = 7.270e-52
Identity = 113/239 (47.28%), Postives = 143/239 (59.83%), Query Frame = 1 
Query:  223 DAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFD-TVARLRQKQGFVREGDIP 936
            D +VIG GQAGL++ Y L+R G LRF  +D  + + GGAWRH W SL LFS  +WSSLPG+PM ++G   + YP+  E+  Y+  YE   +L V+RP  V  +     G  +VET C     PA W  R V+SA GT  AP WP  P    F GVQIHS+QYR  E F+G RV VVG GNSGAQI AEVSQ+  A    W T   P+FLP  + G+ +F+   AR + KQG   +   P
Sbjct:   10 DVIVIGGGQAGLAIGYFLRRTG-LRFAIVDG-EPDPGGAWRHGWDSLRLFSPAEWSSLPGWPMPSSG---EAYPTRDEVIAYLTAYEARYELPVIRPAEV-DLVHAEAGALVVET-C-----PATWRTRAVVSATGTWRAPYWPPYPDQPRFEGVQIHSAQYRNPEVFKGQRVLVVGGGNSGAQIFAEVSQVADAT---WVTPEPPTFLPDDVDGRVLFERATARWQAKQGIGADAPPP 233
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A2N7W6H4_9BURK (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Trinickia soli TaxID=380675 RepID=A0A2N7W6H4_9BURK)

HSP 1 Score: 187 bits (475), Expect = 8.480e-52
Identity = 116/245 (47.35%), Postives = 154/245 (62.86%), Query Frame = 1 
Query:  208 LAARVDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFDTVARLRQKQGFVREGDIPSL 942
            +A +VD VVIG GQAGL+ +Y L+RA  + +V LD +Q   GGAWRH W SL LFS  +WSSLPG+ M A+   +D YPS  E+  Y+ +YE+  +  V+RPV V  V+R T G  LV TD         W A+ V+SA GT +AP  P  PG +VFRG Q+HS+QYR   +F+G +V VVG GNSGAQILAEVS+   A    W TL EP FLP  + G+ +F+   R   +   +R+G  P++
Sbjct:    1 MATQVDVVVIGGGQAGLATSYFLRRAA-IDYVVLD-DQSAPGGAWRHTWDSLHLFSPAQWSSLPGWLMPAS---QDEYPSRNEVIEYLTKYEERYQFPVLRPVHVLSVSRLTKG-LLVTTD------RGEWSAKAVVSATGTWSAPYIPAYPGCEVFRGRQMHSAQYRSPNEFQGQQVLVVGGGNSGAQILAEVSKECKAT---WVTLHEPVFLPDDVDGQVLFE---RATARWKALRDGLTPAV 227
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A4Q3XXT4_9PROT (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A4Q3XXT4_9PROT)

HSP 1 Score: 186 bits (473), Expect = 1.580e-51
Identity = 114/239 (47.70%), Postives = 141/239 (59.00%), Query Frame = 1 
Query:  223 DAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFD-TVARLRQKQGFVREGDIP 936
            D VVIG GQAGL+  Y L+R+G L FV LD  +   GGAWRH WPSL LFS   WSSLPG+PM    AC++GYP+   +  Y+  YE    L VVRPV V+ V RT      VET          W AR ++SA GT  +P  P  PG + FRG Q+HS+ Y   E F G  V VVG GNSGAQILAE+S +    ++IW T  EP FLP  + G+ +F+   AR + +QG   EG  P
Sbjct:   10 DVVVIGGGQAGLATGYFLRRSG-LSFVILDG-ESAPGGAWRHAWPSLRLFSPAHWSSLPGWPM---PACDEGYPTREHVIDYLARYETRYALPVVRPVEVSAV-RTDQDRLAVETS------QGSWSARAIVSATGTWRSPHVPAYPGQETFRGRQLHSANYAGPESFAGQTVLVVGGGNSGAQILAEISTVA---TTIWVTPKEPVFLPDTVDGRVLFERATARWQAQQGTGPEGPPP 233
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A101JX09_9HYPH (Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A101JX09_9HYPH)

HSP 1 Score: 186 bits (472), Expect = 1.850e-51
Identity = 124/244 (50.82%), Postives = 147/244 (60.25%), Query Frame = 1 
Query:  208 LAARVDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFD-TVARLRQKQGFVREGDIP 936
            ++A +D VVIG GQAGL+ AY L+RAG L F  LD+ +Q AGGAW H W SL LFS  +WSSLPG+PM    A EDGYP    +  Y+  YE+   L V RPV V GV R   G F VET+      P R  AR VISA GT   P WP  PG  +FRG QIHS++YR   +F G RV VVG GNSGAQILAE+S   M     W T   PSFLP  + G+ +F+   AR R  Q   R  D+P
Sbjct:    1 MSAPLDVVVIGGGQAGLASAYFLRRAG-LSFSILDS-EQRAGGAWLHAWDSLRLFSPAQWSSLPGWPM---PATEDGYPKRDAVIDYLSRYEERYGLAVKRPVEVEGV-RKDGGLFTVETNA----GPVR--ARAVISATGTWRNPFWPSYPGQHLFRGQQIHSARYRSPAEFAGRRVIVVGGGNSGAQILAELS---MVADVTWVTPTPPSFLPDDVDGRVLFERATARWRAAQEG-RSVDVP 228
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: UPI00034A9A18 (ArsO family NAD(P)H-dependent flavin-containing monooxygenase n=4 Tax=Paraburkholderia kururiensis TaxID=984307 RepID=UPI00034A9A18)

HSP 1 Score: 185 bits (469), Expect = 6.110e-51
Identity = 117/239 (48.95%), Postives = 147/239 (61.51%), Query Frame = 1 
Query:  214 ARVDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPM-FANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFDTVARLRQKQGFVREG 927
            A +D VVIG GQAGL+ AY L+RAG L ++ LD +Q   GGAWRH W SL LFS  +WSSLPG+ M  +NG     YPS  E+  Y+  YE    + V RPV V  V+R   G+ LV TD         W AR V+SA GT +AP  P  PG ++FRG Q+HS+QYR A+D RG  V VVG GNSGAQILAEVS +  A   +W TL +P FLP  + G+ +F+   R   K   +R+G
Sbjct:    3 ADIDVVVIGGGQAGLATAYFLRRAG-LDYIVLD-DQSAPGGAWRHTWDSLHLFSPAQWSSLPGWQMPVSNGT----YPSRDEVIAYLARYEDRYHIPVRRPVHVKSVSRV-QGSLLVSTD------RGEWLARAVVSATGTWSAPYVPDYPGREIFRGRQMHSAQYRNADDLRGQNVLVVGGGNSGAQILAEVSTVCNA---MWVTLHDPVFLPDDVDGRVLFE---RATAKWQALRDG 222
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: UPI001564FFB4 (ArsO family NAD(P)H-dependent flavin-containing monooxygenase n=1 Tax=Paraburkholderia sp. NMBU_R16 TaxID=2698676 RepID=UPI001564FFB4)

HSP 1 Score: 185 bits (469), Expect = 7.880e-51
Identity = 114/242 (47.11%), Postives = 149/242 (61.57%), Query Frame = 1 
Query:  217 RVDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFDTVARLRQKQGFVREGDIPSL 942
            ++D VVIG GQAGL+ AY L+RAG + +V LD +Q  AGGAWRH W SL LFS   WSSLPG+ M  +   +  YPS  E+  Y+  YE   ++ V+RPV V  V+    G  LV TD        +W A+ V+SA GT +AP  P  PG ++FRG QIHS+QYRC+++  G  V VVG GNSGAQILAEVS++  A    W TL EP FLP  + G+ +F+   R   +   +REG  P +
Sbjct:    4 QIDVVVIGGGQAGLATAYFLRRAG-IDYVVLD-DQSAAGGAWRHTWDSLHLFSPAPWSSLPGWQMPIS---QQEYPSRNEVIDYLARYEDRYQIPVLRPVHVQSVSPAQDG-LLVATD------RGQWLAKAVVSATGTWSAPYTPDYPGREIFRGRQIHSAQYRCSDELHGQDVLVVGGGNSGAQILAEVSKVCRAT---WVTLHEPVFLPDDVDGQVLFE---RATARWKALREGVTPPV 227
[Close]
BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A1D2TWZ2_9CAUL (Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Phenylobacterium sp. SCN 69-14 TaxID=1660128 RepID=A0A1D2TWZ2_9CAUL)

HSP 1 Score: 182 bits (462), Expect = 5.710e-50
Identity = 111/239 (46.44%), Postives = 144/239 (60.25%), Query Frame = 1 
Query:  223 DAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFD-TVARLRQKQGFVREGDIP 936
            D +V+G GQAGL++ Y L+R G LRF  +D  + E GGAWRH W SL LFS  +WSSLPG+PM ++G   + YP+  E+  Y+  YE    L V+RP  V  + R      +VET C      A W ARTV+SA GT  AP WP  P    + G+QIHS+QY+  E F+G RV VVG GNSGAQILAEVSQ+     +IW T   P FLP  + G+ +F+   AR + +QG   +   P
Sbjct:    9 DVLVMGGGQAGLAIGYFLRRTG-LRFAIVDG-EPEPGGAWRHGWDSLRLFSPAQWSSLPGWPMLSSG---EAYPARDEVIAYLAAYEGRYDLPVIRPAEV-DLVRAEKEALVVET-CA-----ATWRARTVVSATGTWRAPNWPAYPEQARYEGLQIHSAQYQNPEAFKGKRVLVVGGGNSGAQILAEVSQVA---ETIWVTPEPPIFLPDDVDGRVLFERATARWQAQQGIAVDAPPP 232
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BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: UPI000488E2E0 (ArsO family NAD(P)H-dependent flavin-containing monooxygenase n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI000488E2E0)

HSP 1 Score: 181 bits (459), Expect = 1.460e-49
Identity = 121/246 (49.19%), Postives = 141/246 (57.32%), Query Frame = 1 
Query:  220 VDAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFL-VETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFDTVARLRQKQGFVREGDIPSLNRWV 954
            +D VVIGAGQAGL+V   L RA  L  V LDA Q   GGAWRH W SL LFS  KWSSLPG PM      ED YP+  E+  Y+  YE+   L+V RPV V  V R   G  L V TD         W A  V+SA GT  AP+ P LPG + FRGVQ+HSS+YR    F G RV VVG GNSGAQILAEVS +  A    W+TL  P+FLP  + G+ +FD   R  + +        PSL   V
Sbjct:    4 LDVVVIGAGQAGLAVGRELARAD-LGSVVLDA-QDGPGGAWRHGWDSLRLFSPAKWSSLPGVPMPGG---EDTYPARDEVIAYLAAYEERYGLDVRRPVRVEAVERD--GEALRVTTD------RGAWRAGAVVSATGTWDAPIVPDLPGRENFRGVQLHSSRYRSPGAFAGKRVVVVGGGNSGAQILAEVSMVAHAS---WATLTPPAFLPDDVDGRALFDVATRRYRAEQAGEAFRAPSLGNVV 233
[Close]
BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Match: A0A831YNB6_9PROT (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Caulobacterales bacterium TaxID=2282150 RepID=A0A831YNB6_9PROT)

HSP 1 Score: 181 bits (459), Expect = 1.570e-49
Identity = 115/239 (48.12%), Postives = 137/239 (57.32%), Query Frame = 1 
Query:  223 DAVVIGAGQAGLSVAYHLQRAGGLRFVTLDANQQEAGGAWRHRWPSLELFSTRKWSSLPGYPMFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFLVETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQYRCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVGLSGKEIFD-TVARLRQKQGFVREGDIP 936
            D +VIG GQAGL+  Y L+R G L FV LD  Q   GGAWRH W SL LFS  +WSSLPG+PM    A  DGYP+  E+  Y+  YE    L V+RP  V  +        +VET C     PA W AR V+SA GT  AP WP  P   +F GVQIHS+QY+    F G RV VVG GNSGAQILAEVSQ+  A    W T   P FLP  + G+ +F+   AR +  QG   +   P
Sbjct:   10 DVIVIGGGQAGLATGYFLRRTG-LSFVILDG-QAGPGGAWRHGWDSLRLFSPAQWSSLPGWPM--PPAANDGYPTRDEVLAYLAAYEARYALPVIRPAEV-DLVHAQDDALVVET-C-----PAAWRARAVVSATGTWRAPYWPAYPDQALFEGVQIHSAQYQQPGAFAGKRVLVVGGGNSGAQILAEVSQVAEAT---WVTPEPPIFLPDEVDGRVLFERATARWQASQGLGADAPPP 234
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8454.16624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L9_ECTSI1.440e-14182.64Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E4GUP9_9CAUL7.270e-5247.28Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
A0A2N7W6H4_9BURK8.480e-5247.35Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
A0A4Q3XXT4_9PROT1.580e-5147.70NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Alphap... [more]
A0A101JX09_9HYPH1.850e-5150.82Pyridine nucleotide-disulfide oxidoreductase n=2 T... [more]
UPI00034A9A186.110e-5148.95ArsO family NAD(P)H-dependent flavin-containing mo... [more]
UPI001564FFB47.880e-5147.11ArsO family NAD(P)H-dependent flavin-containing mo... [more]
A0A1D2TWZ2_9CAUL5.710e-5046.44Pyridine nucleotide-disulfide oxidoreductase n=1 T... [more]
UPI000488E2E01.460e-4949.19ArsO family NAD(P)H-dependent flavin-containing mo... [more]
A0A831YNB6_9PROT1.570e-4948.12NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Caulob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8454contigS-dermatodea_contig8454:82..6576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score303.1
Seed ortholog evalue8.9e-80
Seed eggNOG ortholog2880.D7G3L9
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD-dependent pyridine nucleotide-disulphide oxidoreductase
Ec32 orthologEc-07_000710.1
Exons5
Model size1307
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.4721868-UTR-S-dermatodea_contig8454:81..4101622925344.4721868-UTR-S-dermatodea_contig8454:81..410Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 82..410 -
1694079870.0720384-UTR-S-dermatodea_contig8454:81..4101694079870.0720384-UTR-S-dermatodea_contig8454:81..410Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 82..410 -
1622925344.5416422-UTR-S-dermatodea_contig8454:2931..30181622925344.5416422-UTR-S-dermatodea_contig8454:2931..3018Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 2932..3018 -
1694079870.127345-UTR-S-dermatodea_contig8454:2931..30181694079870.127345-UTR-S-dermatodea_contig8454:2931..3018Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 2932..3018 -
1622925344.552033-UTR-S-dermatodea_contig8454:6255..65761622925344.552033-UTR-S-dermatodea_contig8454:6255..6576Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 6256..6576 -
1694079870.1362553-UTR-S-dermatodea_contig8454:6255..65761694079870.1362553-UTR-S-dermatodea_contig8454:6255..6576Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8454 6256..6576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.4832637-CDS-S-dermatodea_contig8454:410..5021622925344.4832637-CDS-S-dermatodea_contig8454:410..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 411..502 -
1694079870.085262-CDS-S-dermatodea_contig8454:410..5021694079870.085262-CDS-S-dermatodea_contig8454:410..502Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 411..502 -
1622925344.4958494-CDS-S-dermatodea_contig8454:1538..18021622925344.4958494-CDS-S-dermatodea_contig8454:1538..1802Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 1539..1802 -
1694079870.095164-CDS-S-dermatodea_contig8454:1538..18021694079870.095164-CDS-S-dermatodea_contig8454:1538..1802Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 1539..1802 -
1622925344.5135913-CDS-S-dermatodea_contig8454:2158..23161622925344.5135913-CDS-S-dermatodea_contig8454:2158..2316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 2159..2316 -
1694079870.1066358-CDS-S-dermatodea_contig8454:2158..23161694079870.1066358-CDS-S-dermatodea_contig8454:2158..2316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 2159..2316 -
1622925344.5291214-CDS-S-dermatodea_contig8454:2875..29311622925344.5291214-CDS-S-dermatodea_contig8454:2875..2931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 2876..2931 -
1694079870.1156619-CDS-S-dermatodea_contig8454:2875..29311694079870.1156619-CDS-S-dermatodea_contig8454:2875..2931Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8454 2876..2931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8454.16624.1prot_S-dermatodea_contig8454.16624.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8454 411..2931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8454.16624.1

>prot_S-dermatodea_contig8454.16624.1 ID=prot_S-dermatodea_contig8454.16624.1|Name=mRNA_S-dermatodea_contig8454.16624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=190bp
MFANGACEDGYPSTREMAMYMEEYEQVMKLNVVRPVTVTGVTRTTMGTFL
VETDCLLGGTPARWEARTVISAAGTHTAPVWPRLPGSDVFRGVQIHSSQY
RCAEDFRGARVAVVGAGNSGAQILAEVSQIGMAKSSIWSTLGEPSFLPVG
LSGKEIFDTVARLRQKQGFVREGDIPSLNRWVGETGREV*
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mRNA from alignment at S-dermatodea_contig8454:82..6576-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8454.16624.1 ID=mRNA_S-dermatodea_contig8454.16624.1|Name=mRNA_S-dermatodea_contig8454.16624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6495bp|location=Sequence derived from alignment at S-dermatodea_contig8454:82..6576- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGAGGAGCGGGGACAGCATCAGCGGCATCAGCATCGCCGGCGCCAGC
CGCGGCGCCTGTGGTCTCCTCCTCGGCGGCTCCGCTGTCAGGAGCAAAGA
GGAACATATCGTCCTCCACGAGCGGCGGCGCGTTGCTATCGTCGAACCTC
TCCGAGCGGTCCGGGGCTCGGGGCATCTCTACCGCAGACGGCGGCCGCGG
CGCACAGCTTGCTGCAAGGGTGGATGCCGTCGTGATCGGGGCCGGGCAGG
CGGGACTGTCAGTGGCGTACCATCTTCAGCGCGCAGGGGGATTGCGGTTC
GTGACGCTAGATGCCAACCAGGTAAGCTAGGTGGTGAGTGAGAGGGGGAT
TGGTCGGCGGGGGGGGGGGGGGCGGAGGGGACTCCCTTGGACATGGTGGG
CCCTAACCCTTGCTCTACGTTTTTGAAATTATTTACTGTTTCAGGGAGTG
ATGTGTCGCTCAGGACAAGAAATTTTTGTGCCATAACCATATGACATCAT
ACATGACATGATACCATAGCACCATACGTATCAAGTGCGCCTCCATAGGT
GAAGCTGGGACCATCTTCCGTCTTGAAAAAGTGGGACCCCAACGCACGCT
TTACGTTTTTGAAATCGTTATATTTTTAGGGGGTGGGGGGCGGAGGTCGG
GGGGTACTTTACACAAGGCAGGTGTAGCTTGGACAATCTTCCCTTTCATA
AACATTGGGGACCCTACCGATCGCTCCATGTCTTTGAAATCATTTACATT
TTAGGGGATAGGGATGGCGTCAGCTTGAGATCTAGACAGTTACTTTTGCT
TTGTCATTGTATGCACGCTGGGGTGGATCCCTTGGTCATGTTGAGGACGT
TTTTGTTTTGCCAGTGTGTCGTTCCATTTGAAGCAAGTTATTGTGACGTT
ATGAGTTGGTGCTAGGGCGGCGGATGCATGGGTTCTCCACCGTAGTGTGA
ATCCCCACCACTTCATGACCTCTCACCAAAGACAGGATTCGGAGAGTAAG
GCCGAACGGCCGTTTCATACATGATACATGGAGCTCTATGTGATGAAACA
AAACATAATAGGCCATGCATAAAAAGGCCTCACGAAGCCCCCTATGTGAT
GAAACAAAACCTAATAGGCCATGCATAAAAAGGCCTCACGAAGCCCCCTA
TGATAGCGCACGATGAAACCCTCGTGAGCCTGCTCGCCACGCACGACTTG
AAGCAGTCTTCATATTGGTACGGACAAGAACGCAAACTAAAAATGGTGTC
ATCTTGAAATGTAGCCGGTATCGTACATTACGGGGTATCTAGAAAACATT
TGGTTTGGTGCAGCCCGCCTAATTGATGTTGTTTTTTTACCATGTCTATT
TCCTCTTTTCACGATTTCCTCTTTCCTTTTTTTTCACGATTATTTTTCTC
TCCTTTTTTCACGATTGTTTCCTTGCGTTTTTCGAGATTTTCTCTCTTTA
TTTTTTTGGCTCTTTTCGCTTCAGCGCGGTTTATAAACTTCAAGTTCATC
ACTTCTTGTCCCCACCGCTTTATTGTTTGGCCGCATAATATAGTAATTAA
GACGGGGGGGTGGAGGTGACGACTCTGTCCCGCAGAGAGGCGAAATTCAA
TTATGAATGCTAGTATTCTGGCCCTGTAATTCGTCATTATTGTATTGAAT
CCATTAGTCGAAATGTTCCGGAGTTTTCCCTGATATTTTAAGCGTATCTG
ACGGCAAGTCAGTTTCTGGTGTACAAGTAGCCGATCGGCTGAATTTGTTG
AAATCGATCAATCGATCACCGCCTCGGACCAAGGCTGCCACTAATTTGCC
TTTTCGCCTGCGTCCTGCGAAGGCAGCCACATGAATAGCGACAGCTACCG
CCGAGAGAAGCTGCTCGTCGCTGCCACCAGAAGTGACTGTTGCGTCGATG
GGGGTATTACAGTTTTGTATATTTGTATTTTTTATTTTTTTGTTGCGCAT
TTTATGCACTTCACAATTATAGCCGATCGGCTCAAATTGCCGCGACCCGG
CTTGTGGTCAGACGCGCAAAGTGTCAAATCAAGAAGGGGAAACAACGAAA
TCAAGAAAATTATACCAGCATCATATTCTACCATGTGCTTGCTACCTGGT
ACTTTTAACTCTAATTACGTTACACTACGAGAGAACTCGAACCGGAGCGC
AATAGTATCATAACTTCAAGTGAACTACACCCAGATGTTGAACCTCGATA
TGATACTCACTGAACCCCGCCTAGTGCTGTTGAACCTCCCGTACCAACAT
GCCAGCATGTACAAGTATGTACTCGTATGGCTGATGTGGTTGGTCCCATA
CCTGGCGGAGTAACAAACAAGGGAAAGCACCTTGTTTTCTCAGCCACAGA
AAGCCTGTAGCTTTCCCTAGAGCCTGGGTGTACAGCAAAGCCCCTCCTGA
TGGGATGGGCGAGCTGCGGGAGTGTGCCTGAGCCCAATGCGTTTATTTCG
CGATAGAAAGCTACCTCTAAGGCGTGTAGAGCTCTACTTGTACTTGAGTC
ATACCGGGTATGGGATGGGATATCAATTATTTACAGGAGAGATTGCTTGC
TCTCTCATGTCGCCACAGACGGGATTCGGACAAGGCTGGTGGTCGATCAG
TGGAATGCATCCGATAAACATCGGCCGTTTTCGTCTTGAAGTTGTGGAAT
GCCGCGTTTTACTGCTTGACGACGTTAGCAGGCACCCAGTTACGAAGTTA
ATGCAACCAAACCTATGAAACGCCTTGCTGAACGAACAACAATTCAGCAC
CCGAAAAAGAGAGTCTGGCTTTCGAGCTCGTTCTACACACAGCATCTACA
AGTACACGATGTCGCGGCCAAAAAGGGTTGTCTAAAGTGATCATTCCCGA
GAAAGCCCTTGGGGCCATTGACCAGTTTTTAAAAGCTCGATAACGGGTCT
GCCTGTAGCCACAAGGGATCATTCCATCTCTCGTATCCCCGGTTATTTAC
GTTTTAAAGATTTTATCGCGCGTTGGGTTCGTCACTCCCGCAGCTGGCCG
ATTGGTCGTATTTTGCTTACTCACGCTGCCGCACGCGCTTTGCGCAGTGG
AGGTAGAGGCGATTAAGTAAGTATCGACCGTGTCTGGGTTCAAACCCGGG
TCCTCCGCCGTACTGGACGTTCTTACACCGGTCCAGCCACGGGGCGCGCG
GCTAACGATAGTCCTCGGTAATTAGCTGCAGGATTGCTCAACCCAACGCG
CGATAAAAATGAAGGGCATGGGGCGGACGGGGAGGGAGAAGTGAGCCTCC
GTAGGTGTAGCTTGGATCATTTTCCGTTTAAAAAAAAGACCAGACCCTAA
AGCGCGCTGTTTTATCTTTGAACTCATTTTATTTTCCGGGAGAAGTAGAG
ACACACCGGAGAGACCGTGGGCTGCCTGGAGCATTATCTGGGGGTCGGAA
GCGAACATACAATTACAAAAAAAAAAAACAAAAAAAAACACACACACACA
CACACACACGCACACACCCACACGCACACGCGCGCGCCTTCCATGTGTTT
GTTCCCAGCTGTCTCCTGCCGCCGCAAAACTCATGACCCTAACCTTTTCT
TGTCCGAGCAGGAAGCCGGTGGAGCTTGGAGGCATCGGTGGCCCTCGCTC
GAGCTATTTTCGACGAGAAAGTGGAGCTCGCTTCCGGGTTACCCCATGTT
CGCGAACGGCGCTTGCGAGGACGGTTACCCTTCCACGAGAGAGATGGCCA
TGTGAGATATATTATGTTATACACGACGTGCAGGATACTGTTGACAGCAG
TGTCAGCTCGAGAATCGCACGTTACCCCATCTCCCCAGTAGAGCTACCGT
AATGATTTATTTAATTGGGTTGATGAATTTTTACACGAATAGCCGACCGG
CTTAATCCGACCCGGTTTCCGTTACTCTATCATTTGTTGCACGTGCATAC
GCTCTTTCGCTTTGGGTTGGAATACATCATCAACATTTCGCGACGTGTGC
GTTCGTGTGAGGACCAAATCTACAGATGACAAACAGGGCCGCTCCCATCC
CCAAGATTTTCTTGCTATAACTGTAACACCTGTACAATATGCATGGTGCC
TTTCCTGCGTCATTTCCTGCTTCGTGTCCTCTCCCGAAAAGGTTCACGAC
CAAGGCCGTCGGCCACCCCCCCCCCCCCTCCCCTCTCTTGGCCACCTCTC
GTCACTTACACCAATATATTTCCATTGTATATACAGGAGTACCAGGTACA
TATTACTTTGTACCTTTCCTGAGTGGTGTATATCCTCCGCTTTGTCCGCT
CTTGAAAAAGGTACATGGAGGAGTACGAGCAGGTGATGAAGCTTAACGTG
GTTCGTCCGGTGACGGTTACGGGCGTTACAAGAACGACGATGGGAACGTT
CCTCGTCGAGACGGACTGCCTCCTCGGTGGTACTCCCGCCCGGTGGGAGG
CTCGGACGGTCATTAGCGGTGAGTGCGCCGACAAGGGATTAGTTTTTGGC
ATTATAATTTTTTGTCATGCCTTTTTCCCCCTCAGAAATATGGGGACGGA
AGGGGGTACTGCCCATATACTGGGGTGTTTTGTGCGATGCCTATTCCACA
AAGCCGCACTGCCCAGGTTGCTGGGGTGGTTGACCAGTTATTGATGTCCT
TAGCACACGCACGACTGCCCAGATAGCTGGGGCGGTTCTTTCCGATGTCC
GCTAAGAAAACAAAGAAGCACACACACACACACGAAACCCACAGCCCCAC
GCGAAACTAGAGCCCCAAGTAACCCCCCCCCCCCCCCGCCCTCCCGCCCC
CTTTTTTTGCAACTCCCTTCGCAGCGGCCGGCACCCATACGGCCCCGGTG
TGGCCACGCCTCCCAGGATCAGACGTTTTCAGAGGGGTCCAGATCCACAG
CAGCCAGTACCGGTGCGCTGAAGACTTCCGAGGTGCTCGAGTCGCGGTCG
TGGGCGCTGGCAACAGCGGCGCTCAGATATTGGCGGAGGTTTCCCAGATC
GGGATGGCGAAGTCCTCGATCTGGTCGACCCTGGGAGAGCCATCGTTTTT
GCCGGTCGGGCTTTCCGGGAAAGAGATCTTCGATACCGGTGAGTGTGTTC
TGCTGAAAGTGTTTTAGAAAAAAAAAATCAAAGCGGAAGTGAAATTTAGT
GAAGTTCAGAAGCGAATAAGCAAAGAGACGGAGTGGCATGTTTCAGTTAT
TTCTGCAGGATGTGCTCTATGTATAATGTGTGTTTGTGTGTGTGTGTTTT
TTTTTTTTTTGCGCACATGTACATTGTAATAGCGGCTGTCCTAGGTCTGT
CTGTTGTCACAAGGGGTCATCATATGTCTCTTACCCCCGGTCCTTACGTT
AGGGTTTTATCACGCATTGGGTTCGGCACTCCCGCAGCTCGCAGATTCCT
CCGATTTTGCTTACCGAGGCGCTTTGTGTGATTTTTTTGTGTTTTCGTGA
ATGGGAGGGATTGTTGCTGTTTACATGTATTTTTGTTTTGTAAGTAGGGA
GTTTTTTTGTGTTTTTTAATTATACTAGATGGATTCGAGAAGTACACCTG
CTTTTATTGTGCACAAATACTTGTACAAGTAACGCCGACGACAGTCCCGG
TCTGCGAATGACGATGGTGTTGCATACCGATGAGCCCTTCCTGTAGGAGA
GGAGGCTGTGTTATTTTTCTTTTTAGCAGGCCCAAGTTCCGAGGTATGTC
CTCTCTGCTCCCGAGGGTTTGTGGCATTTCCTTATATGATTTTTTTGCTT
ACCTTTTTTTTTTTCATCTGACCGCGGGCGAGCGGGATCGGCAAATGTTT
ATGGCCCGGTTGGTTGGTTGTAAGTGTGACAAATCAATCGAAATCAACCA
GTCAAATTCTGACCACGGGCGAGCGGGGTCGGCAAAGCTTTAATCTAAAC
CAATAAAAATTCAAGCATTAATAGAATCCATCTTTGGTGTCGAAAACAAT
GACCTATACCTTGTATTGAGTGTGAGGTACGTACGTATGCACATCGCAGC
ACTACCTTGCAAAGCAATGACAAATCGTCCCCCGTCCGCCCCCCCGCACC
TCGCCCTGTAACTCTACCGTGCCACCCCCCCCCCCACCGCCCTGTTCTTC
CTCGCCCCGCTGTCGCTTGATCAGTTGCGCGGCTGAGACAAAAGCAAGGG
TTTGTCCGGGAAGGAGACATCCCGTCTCTCAACAGGTGGGTGGGGGAGAC
TGGACGTGAAGTGTGAAGGAAGTTTCAAGCTTTGTCGAACGTTCTTGGGG
AATTTGCGAGCTTTGGAACCTTCTCCGGATAGATAAAGCTTAAGCTTTGG
AACATTCTTTTTGCGAAGGTTCAAGGTTTGTGGAGCGTTCTTGGGAATTT
TCGAGCTTTGGAACGTTCTCCGAAAAACACAAAGCTTTGGACCATTGTTT
TTGGAAAGTTTCAACCTTTGTGGAAAAGGCGTCGGAACGTTCTGTGGAAA
GTTCAAGCTTTGGAGCATTCATAGGCAGCTTTAAGCTTTGGAACGTTCTT
GGGCAGGTTCGACCTTCGACAAAACGAAGCAACGTGATACGCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8454:82..6576-

>mRNA_S-dermatodea_contig8454.16624.1 ID=mRNA_S-dermatodea_contig8454.16624.1|Name=mRNA_S-dermatodea_contig8454.16624.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at S-dermatodea_contig8454:82..6576- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCGCGAACGGCGCTTGCGAGGACGGTTACCCTTCCACGAGAGAGAT
GGCCATATGTTCGCGAACGGCGCTTGCGAGGACGGTTACCCTTCCACGAG
AGAGATGGCCATGTACATGGAGGAGTACGAGCAGGTGATGAAGCTTAACG
TGGTTCGTCCGGTGACGGTTACGGGCGTTACAAGAACGACGATGGGAACG
TTCCTCGTCGAGACGGACTGCCTCCTCGGTGGTACTCCCGCCCGGTGGGA
GGCTCGGACGGTCATTAGCGGTACATGGAGGAGTACGAGCAGGTGATGAA
GCTTAACGTGGTTCGTCCGGTGACGGTTACGGGCGTTACAAGAACGACGA
TGGGAACGTTCCTCGTCGAGACGGACTGCCTCCTCGGTGGTACTCCCGCC
CGGTGGGAGGCTCGGACGGTCATTAGCGCGGCCGGCACCCATACGGCCCC
GGTGTGGCCACGCCTCCCAGGATCAGACGTTTTCAGAGGGGTCCAGATCC
ACAGCAGCCAGTACCGGTGCGCTGAAGACTTCCGAGGTGCTCGAGTCGCG
GTCGTGGGCGCTGGCAACAGCGGCGCTCAGATATTGGCGGAGGTTTCCCA
GATCGGGATGGCGAAGTCCTCGATCTGGTCGACCCTGGGAGAGCCATCGT
TTTTGCCGGTCGGGCTTTCCGGGAAAGAGATCTTCGATACCGCGGCCGGC
ACCCATACGGCCCCGGTGTGGCCACGCCTCCCAGGATCAGACGTTTTCAG
AGGGGTCCAGATCCACAGCAGCCAGTACCGGTGCGCTGAAGACTTCCGAG
GTGCTCGAGTCGCGGTCGTGGGCGCTGGCAACAGCGGCGCTCAGATATTG
GCGGAGGTTTCCCAGATCGGGATGGCGAAGTCCTCGATCTGGTCGACCCT
GGGAGAGCCATCGTTTTTGCCGGTCGGGCTTTCCGGGAAAGAGATCTTCG
ATACCGTTGCGCGGCTGAGACAAAAGCAAGGGTTTGTCCGGGAAGGAGAC
ATCCCGTCTCTCAACAGGTGGGTGGGGGAGACTGGACGTGAAGTGTGATT
GCGCGGCTGAGACAAAAGCAAGGGTTTGTCCGGGAAGGAGACATCCCGTC
TCTCAACAGGTGGGTGGGGGAGACTGGACGTGAAGTGTGA
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