mRNA_S-dermatodea_contig84516.16623.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84516.16623.1
Unique NamemRNA_S-dermatodea_contig84516.16623.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A8F0JXT2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXT2_9PHAE)

HSP 1 Score: 256 bits (653), Expect = 9.830e-86
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKP+NDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSS+ALVTLLTICL MYGKVTFQE D+ NEN+   LN+KNWN+FTSGF IGSFGGASFAYLILLNL
Sbjct:    1 MTSFIKPFNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSIALVTLLTICLVMYGKVTFQEYDEVNEND--LLNSKNWNRFTSGFLIGSFGGASFAYLILLNL 143          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A6G6D758_ECTSI (Photosystem I reaction center subunit XI n=36 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D758_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 2.540e-82
Identity = 120/145 (82.76%), Postives = 136/145 (93.79%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYN+DPSVGHLSTPVTSSAATKAYL +LPAYRKGLSPLLRG+EIGMAHGYLL+GPF+KLGPLR SEISLL+GFLSS+ L+TLLT+CL+MYGKVTFQESD +  N+++ LN KNWN+FTSGFF+GSFGG SFAYLILLNL
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAYLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRGSEISLLIGFLSSIGLITLLTVCLAMYGKVTFQESDNDVVNKNDLLNGKNWNQFTSGFFVGSFGGVSFAYLILLNL 145          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A2R4QPZ7_9PHAE (Photosystem I reaction center subunit XI n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QPZ7_9PHAE)

HSP 1 Score: 244 bits (623), Expect = 3.940e-81
Identity = 121/145 (83.45%), Postives = 137/145 (94.48%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYNDDPSVGHLSTP+TSSAATKAYL++LPAYRKGLSPLLRG+EIGMAHGYLL+GPF+KLGPLR+SE+SLL+GFLSSVALVTLLT+CL+MYGKVTF++SD  N NE   L +KNWN+FTSGFFIGSFGG SFAYLILLN+
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELSLLIGFLSSVALVTLLTVCLAMYGKVTFEDSDVINTNE--LLTSKNWNQFTSGFFIGSFGGVSFAYLILLNI 143          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A6B7EXU1_9PHAE (Photosystem I reaction center subunit XI n=2 Tax=Chordariaceae TaxID=66220 RepID=A0A6B7EXU1_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 8.210e-81
Identity = 117/145 (80.69%), Postives = 136/145 (93.79%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYN+DPSVGHLSTPVTSSAATKA+L +LPAYRKGLSPLLRG+EIGMAHGYLL+GPF+KLGPLR SEI+LL+GFLSSV LVT+LT+CL+MYGKVTFQE+D ++ N ++ L+ KNWN+FTSGFF+GSFGG SFAYLILLNL
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPVTSSAATKAFLGSLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRTSEIALLIGFLSSVGLVTILTVCLAMYGKVTFQEADNDSNNRNDLLSGKNWNQFTSGFFVGSFGGVSFAYLILLNL 145          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A1L2F1Y4_9PHAE (Photosystem I reaction center subunit XI n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A1L2F1Y4_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 4.400e-78
Identity = 116/145 (80.00%), Postives = 133/145 (91.72%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYNDDPSVGHLSTP+TSSAATKAYL++LPAYRKGLSPLLRG+EIGMAHGYLL+GPF+KLGPLR+SE++ L+GFLSSV L+T+LT+CL+MYGKVTF +SD  N    E L +KNWN+FTSGFFIGSFGG SFAYLILLNL
Sbjct:    1 MTSFIKPYNDDPSVGHLSTPITSSAATKAYLASLPAYRKGLSPLLRGLEIGMAHGYLLLGPFEKLGPLRESELAPLIGFLSSVGLITILTVCLAMYGKVTFDDSDSTNT--IELLTSKNWNQFTSGFFIGSFGGVSFAYLILLNL 143          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A8E5XRG2_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRG2_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 6.680e-78
Identity = 114/145 (78.62%), Postives = 131/145 (90.34%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYN+DPSVGHLSTP+T+SAATKA+L NLPAYR GLSPLLRG+EIGMAHGYLL+GPF KLGPLRDSE+SLL GFLSS+ L+T+LT+CL+MYGKVTFQ S+K +E+    L  +NWN+FTSGFFIGSFGGA FAYLILLNL
Sbjct:    1 MTSFIKPYNNDPSVGHLSTPITASAATKAFLGNLPAYRNGLSPLLRGLEIGMAHGYLLLGPFDKLGPLRDSEVSLLAGFLSSIGLLTILTVCLAMYGKVTFQRSEKISEDNQGVLGYRNWNRFTSGFFIGSFGGAGFAYLILLNL 145          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A2I4Q2H3_9PHAE (Photosystem I reaction center subunit XI n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H3_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 1.250e-75
Identity = 114/145 (78.62%), Postives = 133/145 (91.72%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            M SFI+P+NDDPSVGHLSTP+TSSAATKAYLSNLPAYRKGLSPLLRG+E+GMAHGYLL+GPF KLGPLR+SEISLLVGFLS+ AL+++LTICL+MYGKVTFQ+S K+  + D  L + NW++FTSGFFIG+FGG SFAYLILLNL
Sbjct:    1 MISFIRPFNDDPSVGHLSTPITSSAATKAYLSNLPAYRKGLSPLLRGLEVGMAHGYLLLGPFAKLGPLRESEISLLVGFLSASALISILTICLAMYGKVTFQDSSKDISSND-LLTSTNWSRFTSGFFIGAFGGISFAYLILLNL 144          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A7S6U9X1_9STRA (Photosystem I reaction center subunit XI n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9X1_9STRA)

HSP 1 Score: 219 bits (557), Expect = 4.970e-71
Identity = 112/147 (76.19%), Postives = 128/147 (87.07%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESD--KNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MTSFIKPYN+DP VGHLSTPVT+SA TKA+L +LP YR GLSPLLRG+EIGMAHGYLLVGPF KLGPLR+SEI+LL GFL+S+ L+++LT CL MYGKVTFQES+  K   N+D  L  KNWN+FTSGFFIG+FGGASFAYLILLNL
Sbjct:    1 MTSFIKPYNNDPFVGHLSTPVTTSATTKAFLGSLPIYRSGLSPLLRGLEIGMAHGYLLVGPFDKLGPLRNSEIALLAGFLASLGLISILTTCLIMYGKVTFQESNEIKKVANKD-LLTGKNWNQFTSGFFIGAFGGASFAYLILLNL 146          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: A0A1Z1MSL9_9FLOR (Photosystem I reaction center subunit XI n=6 Tax=Rhodomelaceae TaxID=2803 RepID=A0A1Z1MSL9_9FLOR)

HSP 1 Score: 191 bits (486), Expect = 3.670e-60
Identity = 92/145 (63.45%), Postives = 122/145 (84.14%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            MT+FIKPYN DP VG+LSTP+++S+ TK+ LSNLPAYR+GLSPLLRG+EIGMAHGY L+GPF KLGPLR+++I+LL GFLS+V L+ +LT CLSMYG VTF  S+ ++E++D    +  W++FT+GFF+G+ GG+ FAYL+L NL
Sbjct:    1 MTNFIKPYNRDPFVGNLSTPISTSSLTKSLLSNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRNTDIALLSGFLSAVGLIVILTACLSMYGSVTF--SNNSDESKDILQTSGGWSQFTAGFFVGAVGGSGFAYLLLANL 143          
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Match: B7T210_VAULI (Photosystem I reaction center subunit XI n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T210_VAULI)

HSP 1 Score: 189 bits (481), Expect = 1.920e-59
Identity = 91/148 (61.49%), Postives = 120/148 (81.08%), Query Frame = 1
Query:    1 MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEIGMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVTFQESDKNN---ENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL 435
            M +FIKPYN+DP VGHLSTP+T+S  TK +L NLP YR+ LSPL RG+E+GMAHGYLLVGPF+KLGPLR+SE++LL GF+S++ L+ +L +CL +YGK +FQES K +    N+D  L  + W++FTSGF +G+FGGA FAYL+LLN+
Sbjct:    1 MANFIKPYNNDPFVGHLSTPITTSLITKTFLGNLPIYRENLSPLFRGLEVGMAHGYLLVGPFEKLGPLRNSEVALLSGFVSALGLIIILVLCLVIYGKASFQESPKASLKITNQD-LLTKEGWSQFTSGFSVGAFGGAGFAYLLLLNI 147          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84516.16623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JXT2_9PHAE9.830e-8691.03Photosystem I reaction center subunit XI n=1 Tax=P... [more]
A0A6G6D758_ECTSI2.540e-8282.76Photosystem I reaction center subunit XI n=36 Tax=... [more]
A0A2R4QPZ7_9PHAE3.940e-8183.45Photosystem I reaction center subunit XI n=3 Tax=F... [more]
A0A6B7EXU1_9PHAE8.210e-8180.69Photosystem I reaction center subunit XI n=2 Tax=C... [more]
A0A1L2F1Y4_9PHAE4.400e-7880.00Photosystem I reaction center subunit XI n=14 Tax=... [more]
A0A8E5XRG2_9PHAE6.680e-7878.62Photosystem I reaction center subunit XI n=1 Tax=I... [more]
A0A2I4Q2H3_9PHAE1.250e-7578.62Photosystem I reaction center subunit XI n=1 Tax=D... [more]
A0A7S6U9X1_9STRA4.970e-7176.19Photosystem I reaction center subunit XI n=1 Tax=S... [more]
A0A1Z1MSL9_9FLOR3.670e-6063.45Photosystem I reaction center subunit XI n=6 Tax=R... [more]
B7T210_VAULI1.920e-5961.49Photosystem I reaction center subunit XI n=1 Tax=V... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84516contigS-dermatodea_contig84516:233..670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score247.7
Seed ortholog evalue3.4e-63
Seed eggNOG ortholog2880.D1J7C4
Preferred namePSAL
KEGG koko:K02699
KEGG Pathwayko00195,ko01100,map00195,map01100
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28NVH@1,2QVFH@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorysignal anchor
Exons1
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925344.4321628-CDS-S-dermatodea_contig84516:232..6701622925344.4321628-CDS-S-dermatodea_contig84516:232..670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84516 233..670 -
1694079870.0487683-CDS-S-dermatodea_contig84516:232..6701694079870.0487683-CDS-S-dermatodea_contig84516:232..670Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84516 233..670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84516.16623.1prot_S-dermatodea_contig84516.16623.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84516 233..670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84516.16623.1

>prot_S-dermatodea_contig84516.16623.1 ID=prot_S-dermatodea_contig84516.16623.1|Name=mRNA_S-dermatodea_contig84516.16623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
MTSFIKPYNDDPSVGHLSTPVTSSAATKAYLSNLPAYRKGLSPLLRGIEI
GMAHGYLLVGPFQKLGPLRDSEISLLVGFLSSVALVTLLTICLSMYGKVT
FQESDKNNENEDEWLNNKNWNKFTSGFFIGSFGGASFAYLILLNL*
back to top

mRNA from alignment at S-dermatodea_contig84516:233..670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84516.16623.1 ID=mRNA_S-dermatodea_contig84516.16623.1|Name=mRNA_S-dermatodea_contig84516.16623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig84516:233..670- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAAGTTTTATTAAACCCTATAATGATGATCCCTCAGTTGGGCATTT ATCAACTCCAGTAACTTCATCAGCTGCAACTAAAGCTTATTTAAGTAATT TGCCTGCTTATAGAAAAGGATTATCTCCTCTTTTAAGGGGTATAGAAATT GGTATGGCCCATGGATATTTGTTAGTTGGGCCATTTCAGAAATTAGGACC ATTAAGAGACTCTGAAATTTCTCTTTTAGTAGGATTTTTATCTTCAGTCG CTTTAGTAACGTTATTAACTATTTGCTTATCAATGTATGGGAAGGTTACT TTCCAAGAATCTGATAAAAATAATGAAAACGAAGATGAATGGTTAAATAA TAAAAATTGGAATAAATTTACGTCTGGATTCTTTATTGGGTCATTCGGGG GAGCTAGTTTTGCTTATCTAATACTTCTTAATTTATAA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig84516:233..670-

>mRNA_S-dermatodea_contig84516.16623.1 ID=mRNA_S-dermatodea_contig84516.16623.1|Name=mRNA_S-dermatodea_contig84516.16623.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig84516:233..670- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAAGTTTTATTAAACCCTATAATGATGATCCCTCAGTTGGGCATTT
ATCAACTCCAGTAACTTCATCAGCTGCAACTAAAGCTTATTTAAGTAATT
TGCCTGCTTATAGAAAAGGATTATCTCCTCTTTTAAGGGGTATAGAAATT
GGTATGGCCCATGGATATTTGTTAGTTGGGCCATTTCAGAAATTAGGACC
ATTAAGAGACTCTGAAATTTCTCTTTTAGTAGGATTTTTATCTTCAGTCG
CTTTAGTAACGTTATTAACTATTTGCTTATCAATGTATGGGAAGGTTACT
TTCCAAGAATCTGATAAAAATAATGAAAACGAAGATGAATGGTTAAATAA
TAAAAATTGGAATAAATTTACGTCTGGATTCTTTATTGGGTCATTCGGGG
GAGCTAGTTTTGCTTATCTAATACTTCTTAATTTATAAATGACAAGTTTT
ATTAAACCCTATAATGATGATCCCTCAGTTGGGCATTTATCAACTCCAGT
AACTTCATCAGCTGCAACTAAAGCTTATTTAAGTAATTTGCCTGCTTATA
GAAAAGGATTATCTCCTCTTTTAAGGGGTATAGAAATTGGTATGGCCCAT
GGATATTTGTTAGTTGGGCCATTTCAGAAATTAGGACCATTAAGAGACTC
TGAAATTTCTCTTTTAGTAGGATTTTTATCTTCAGTCGCTTTAGTAACGT
TATTAACTATTTGCTTATCAATGTATGGGAAGGTTACTTTCCAAGAATCT
GATAAAAATAATGAAAACGAAGATGAATGGTTAAATAATAAAAATTGGAA
TAAATTTACGTCTGGATTCTTTATTGGGTCATTCGGGGGAGCTAGTTTTG
CTTATCTAATACTTCTTAATTTATAA
back to top