mRNA_S-dermatodea_contig8445.16618.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8445.16618.1
Unique NamemRNA_S-dermatodea_contig8445.16618.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A182GNA3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNA3_AEDAL)

HSP 1 Score: 187 bits (475), Expect = 3.030e-52
Identity = 106/323 (32.82%), Postives = 174/323 (53.87%), Query Frame = 1
Query:   49 RLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRF---PYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAI-QAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTE 1005
            ++ I+  YVDD L   NDD  +  + + L+ +++ +DL   +++LG+R+T  +G ITLDQ  Y E + +E  G  D    + P D    LS     +   +  R    P+  ++G L F+A   RPDI+ +V  +    ++P   HW   + +LRY+  T D+ L Y     ++S+++  GYSD+D GNDPE RRSVTGY+   +   + W  + Q ++ALS++E E+  +    +  L+ R    E+          C+NR A+  A    G++ RT+H+D++    +E +EQ+   LQ+VP+  QLADV TK +  P   E
Sbjct:   92 KILIVAVYVDDMLVFANDDEIVDALKQQLMVRFQMKDLGYAEQILGMRVTQVDGRITLDQEKYIEQL-LERFGMNDCNPVSTPFDASQKLSKEMSPKSPDDVERMANVPFRELVGGLQFVAQCTRPDIAFAVNAVSSFNSNPGEAHWTAAKRILRYLKGTKDMKLIYS----SESEESFHGYSDADWGNDPETRRSVTGYVFKHSGGAVAWSCRRQPTVALSTTEAEYMAIAAAGQEALWWRSFRAELSGLTTTVEMRCDNRSAMCLAEKEVGYSARTKHIDLRHHFVKEQLEQKTIALQHVPSEGQLADVLTKPVPYPKLRE 409          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A284QR88_ARMOS (Uncharacterized protein n=2 Tax=Armillaria TaxID=47424 RepID=A0A284QR88_ARMOS)

HSP 1 Score: 188 bits (477), Expect = 1.780e-49
Identity = 107/332 (32.23%), Postives = 181/332 (54.52%), Query Frame = 1
Query:   25 MYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGE--GNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQ-GATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTEFV 1011
            +Y+R  +GR+ I+  +VDD L       ++      L N ++ +DL  P K++G+ I      G I+L Q+ Y E ++    G  + R  + PLDP + L  R +           Y +++G L++ A   RPDIS++V+ELG+ A++P   HW  L+ V RY+A T ++ L +    + + +    GYSD+   ++P+ R+S++GY  L   +   W SK Q ++ALSS+E E+T +    R  ++ R +L E+G PQ  +T  F +N+  I  A    ++ R++H D++    RE +E +  +L Y PT + +AD+FTK L  P   +FV
Sbjct: 1058 VYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTR-FGMQNARPVSTPLDPNVILKKRTDDLVADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFR--ANEEGEIISTGYSDASFASNPDDRKSISGYTYLIGGASFAWSSKKQSTVALSSTEAEYTALAHATRQAIWNRNLLSELGCPQEDSTLIFEDNQSTIALARDPQYHARSKHFDIQNHFIREKVENETIELYYCPTEEMVADIFTKGLPRPQHEKFV 1386          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A284R853_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284R853_ARMOS)

HSP 1 Score: 180 bits (457), Expect = 5.020e-49
Identity = 105/332 (31.63%), Postives = 179/332 (53.92%), Query Frame = 1
Query:   25 MYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGE--GNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQ-GATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTEFV 1011
            +Y+R  +GR+ I+  +VDD L       ++      L N ++ +DL  P K++G+ I      G I+L Q+ Y E ++    G  + R  +  LDP + L  R +           Y +++G L++ A   RPDIS++V+ELG+ A++P   HW  L+ V RY+A T ++ L +    + + +    GYSD+   ++P+ R+S++GY  L   +   W SK Q ++ALSS+E E+T +    R  ++ R +L E+G PQ  +T  F +N+  I  A    ++ R++H D++    RE +E +  +L Y  T + +AD+FTK L  P   +FV
Sbjct:  151 VYKRIREGRMTIITVWVDDLLIFSETIEDMMETKGELHNLFDVKDLGEPKKIIGIEIKRDRENGTISLSQKQYIEGVLTR-FGMQNARPVSTLLDPNVILKKRTDDLIADPAMVGGYQSVIGSLLYAARGTRPDISHAVQELGQFASNPGPEHWTALKRVCRYLAGTRNLELVFR--ANEEGEIISTGYSDASFASNPDDRKSISGYTYLIGGASFAWSSKKQSTVALSSTEAEYTALTHATRQAIWNRNLLSELGCPQEDSTLIFEDNQSTIALARDPQYHARSKHFDIQNHFIREKVENETIELYYCLTEEMVADIFTKTLPRPQHEKFV 479          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: UPI001131AAB8 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001131AAB8)

HSP 1 Score: 176 bits (446), Expect = 8.140e-49
Identity = 103/321 (32.09%), Postives = 176/321 (54.83%), Query Frame = 1
Query:   13 NACTMYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGEGN--ITLDQRSYAEDIVIEGVGSTDVRRS-NMPLDPGMDLSAR----EEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTK 954
            N C    +  DG    L+ YVDD L    +  EI ++   L  ++E +DL    K+LG+ I     +  + L Q+ Y +  V++  G  D  +  + PL     LS      +E E E   S+ PYA ++G LM+     RPDIS +V  + R   +P   HW+ ++ +LRY+  T+DV L +    + +  Q+++GY DSD   D + RRS TGY+  F K+P+ W S LQ ++ALS++E E+  + + ++  ++++G+L E+G+ Q +   FC+++ AIQ A    ++ RT+H+D++    RE IE+    ++ + TT+
Sbjct:    9 NHCVYLCKLNDGSFVYLLLYVDDMLIASKNSEEIDKLKIQLKKEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKR-VLQRFGIDDKTKPVSTPLASHFKLSTTMSPMDEAEREY-MSKVPYANVVGSLMYAMVCTRPDISQAVGVISRYMHNPGKEHWQAVKWILRYIHNTVDVGLVF----EQEDNQSVVGYCDSDFAGDLDKRRSTTGYVFTFAKAPVSWKSTLQSTVALSTTEAEYMAITEAVKEAIWLQGLLKELGVEQKSITIFCDSQSAIQLAKNQVYHARTKHIDVRYHFVREIIEEGGITVKKIHTTE 323          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A182GPU0_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GPU0_AEDAL)

HSP 1 Score: 180 bits (457), Expect = 2.460e-47
Identity = 114/333 (34.23%), Postives = 176/333 (52.85%), Query Frame = 1
Query:   43 DGRLAILMT-YVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVG--EGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLS---AREEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQT---EFVG 1014
            DG   + +T YVDD L   N+     ++ ++L+ K++ +DL      LG+RI     EG ++LDQ +Y E  VI+  G TD R    P D  + L    A +  EE +   + P+   +G L F+A   RPDI+ +V  + + +A+P  +HW  ++ ++RYV  T    L Y K    D    L GYSD+D G DP+ RRS +GYL     + I W  K Q ++ALSS E E+  + + ++  ++ R +  E    + A P +C+N+ AI  A    +N RT+HV ++     E +E+    L+Y+PTT Q AD FTK +    Q    +FVG
Sbjct:  435 DGDKILFVTIYVDDLLIFTNNRALKMKLKQYLMEKFDMKDLGEATHCLGIRIARDRTEGRLSLDQEAYIEK-VIQRFGMTDARPVATPADSSIKLEKSMAPKTAEEAMEMRKVPFKEAVGCLSFVAQTTRPDIAYAVNAVSQFSANPGRQHWDAVKRIIRYVKGTSKKKLVYTK----DENGGLQGYSDADWGGDPDDRRSTSGYLFTMQGAAISWSVKKQPTVALSSCEAEYMSLSRAIQEAMWWRNLRSEFTEVE-AMPIYCDNQSAISIARNGSYNPRTKHVSIRYHFVHECLEENNVKLEYIPTTDQAADGFTKAMTIQRQAKLRQFVG 761          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A182GKV7_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GKV7_AEDAL)

HSP 1 Score: 169 bits (427), Expect = 1.800e-46
Identity = 96/288 (33.33%), Postives = 155/288 (53.82%), Query Frame = 1
Query:  154 RDLRVPDKLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAR---EEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAI-QAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTE 1005
            +DL   +++LG+R+T  +G ITLDQ  Y E + +E  G  D    + P D    LS     +  +E    +  P+  ++G L F+A   RPDI+ +V  +    ++P   HW   + +LRY+  T D+ L Y     ++S+++  GYSD+D GNDPE RRSVTGY+   +   + W  + Q ++ALS++E E+  +    +  L+ R    E+          C+NR A+  A    G++ RT+H+D++    +E +EQ+   LQ+VP+  QLADV TK +  P   E
Sbjct:    2 KDLGYAEQILGMRVTQVDGRITLDQEKYIEQL-LERFGMNDCNPVSTPFDASQKLSKEMSPKSSDEVERMANVPFRELVGGLQFVAQCTRPDIAFAVNAVSSYNSNPGEAHWMAAKRILRYLKGTKDMKLVYS----SESEESFHGYSDADWGNDPETRRSVTGYVFKHSGGAVAWSCRRQPTVALSTTEAEYMAIAAAGQEALWWRSFRAELSGLTTTVEMRCDNRSAMCLAEKEVGYSARTKHIDLRHHFVKEQLEQKTIALQHVPSEGQLADVLTKPVPYPKLRE 284          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A182H1Z6_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H1Z6_AEDAL)

HSP 1 Score: 168 bits (426), Expect = 4.360e-45
Identity = 101/335 (30.15%), Postives = 175/335 (52.24%), Query Frame = 1
Query:   25 MYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEF--EEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAI-QAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTEFVGSV 1020
            +Y + +D  + ++  YVDD L    D   IQ + K L+  +  +DL    ++LG+RIT  +  + LDQ  Y +++ +E    T+    + P DP   L+       +++ +  +  +  ++G L FLA   RPDI+ +V  +   ++ P   HW   + +LRY+  T  + L + K     S  +  G+SD+D GNDPE RRS+TGY   +    + W  + Q ++ALS++E E+  +    +  ++ RG LGEM   +   P F +N+ AI  A    G++ R++H+D++    RE +E++   L +V +  Q ADV TK +     TE V ++
Sbjct:   78 VYFKIDDSTILVIAVYVDDFLLFSTDVKLIQNVKKQLMTLFHMKDLGEAKQVLGMRITRSDDAVMLDQERYVDEL-LERFKMTNCNTVSTPADPHQRLTKTGSTTKKQKQHMEKVLFRQLVGGLQFLAHCTRPDIAYAVNVVSSFSSDPSEVHWVAAKRILRYLKGTKSMKLTFRK----QSAPSFDGFSDADWGNDPETRRSITGYTFQYGGGSVAWSCRRQPTVALSTTEAEYMALSGATQEAVWWRGFLGEMFQLELTIPIFSDNQSAICLAEKEIGYSPRSKHIDLRHHFVREQLEKKAISLHHVKSELQKADVLTKPIPGGRFTEAVHNL 407          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: UPI0007EFD71D (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EFD71D)

HSP 1 Score: 166 bits (421), Expect = 3.460e-44
Identity = 108/345 (31.30%), Postives = 172/345 (49.86%), Query Frame = 1
Query:   13 NACTMYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRFP-------YATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQ-GATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTEFVGSVL 1023
            N C ++ +  D  + I++ YVDD + TG D   I  + +HL   +  +DL V    LG+ +        L Q  + ++++            N+P D    ++       +LN    P       Y +++GKL +L    RPD++ SV+ L +   +P + HW  L H +RY+A +       G  +    Q  L  YSDSD    P  RRS+TGY+LLF  SP+ W SK Q +++ SSSE E+  M        +   +L E+G+         C+N+ +I  A    F+ RT+H+++ +  +R+ + + L  L Y+PTT+QLADVFTK L A SQ + + S L
Sbjct:   49 NDCCLFIKRHDTHITIMVVYVDDIIITGTDIASITAIKQHLDIAFSIKDLGVLHYFLGIEVDYVPDGTVLTQSKFTKELL-----------HNLPFDVSKKVATPLPAALKLNNETGPLIQDPEIYRSLVGKLNYLTNT-RPDLNYSVQVLSQFMHAPRVPHWEALIHTIRYIAHSC----HQGILLRASDQLTLQAYSDSDWAACPNTRRSITGYVLLFGSSPVAWKSKKQSTVSKSSSESEYRAMASAAADVTWTVRLLEELGVTNLKPVTLHCDNQSSIAIAKNPVFHERTKHIEIDMHFTRDKVMEGLLQLTYLPTTQQLADVFTKILPA-SQFDLLLSKL 376          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: A0A1Y1INB1_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1INB1_KLENI)

HSP 1 Score: 172 bits (436), Expect = 4.820e-44
Identity = 107/321 (33.33%), Postives = 165/321 (51.40%), Query Frame = 1
Query:   31 RRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNK-YEGRDLRVPDKLLGVRITVGEG--NITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRL 984
            RR+EDGR A    +VDD L  G  + E+    K  L + +  RDL      LG+ +T       I L Q+  A D+ +E  G    R   +PL+PG  +  R E    L+  R+PYA+++G L++LA   RPD++ +   L R  +SP   HWR  + VL Y+A T++  L YG       +    G+ D++ G DP+ RRS TGY+ L   + + W SKLQ ++A S+ E E+       +  L+IR +  ++GL  G    + +N+GA+Q       + R++H+D+     RE + +     +Y PT K  AD  TK L
Sbjct:  901 RRDEDGRTAFTAVWVDDCLVVG--EREVVASVKAALGRIFTVRDLGPVRYFLGMEVTRDREARTIKLTQKRAALDL-LEQFGMDATRARRVPLNPGEKVQKRGE---PLDVERYPYASLVGSLLYLANCTRPDLAQATASLARFMSSPTEDHWRLAKSVLSYLAGTVEAGLTYGA-----EKPEFEGFCDANHGGDPDTRRSTTGYVFLLGGAAVSWASKLQQTVAYSTVEAEYMAAAHAAKEALWIRKLAADLGLESGRLTVWSDNQGALQLIKHPITSQRSKHIDISHHFVRERVVRGELKFEYCPTAKMPADFLTKAL 1210          
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Match: UPI0007F04513 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F04513)

HSP 1 Score: 165 bits (417), Expect = 5.580e-44
Identity = 101/329 (30.70%), Postives = 178/329 (54.10%), Query Frame = 1
Query:   25 MYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPDKLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSAREEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLRHWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRRSVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGILGEMGLPQGAT-PWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQLFDLQYVPTTKQLADVFTKRLRAPSQTEF 1008
            ++ +  +G+LA+++ YVDD + TG+D  EI +  K+L  +++ ++L      LG+ +   E  + L Q+ YA D+ ++  G  + +  + P++P   L A E   ++L  S   Y  I+G L++L  + RPDIS SV  + R   +P   H   ++ VLRY+  T+   L Y KG D     +++GY D+D   D + RRS TGY+ +     + W SK Q +++LS++E E+       +   ++  ++ ++  P  A  P  C+N+ AI+ A    F+ RT+HV++     RE + Q    +++V T +Q+AD+FTK L      +F
Sbjct:   55 LFVKIREGKLAVVLVYVDDLIITGDDIEEIFQTKKNLSVRFQMKELGELKHFLGLEVDHTENGLFLCQQKYATDL-LKRFGMLECKPVSTPMEPNAKLCAHEG--KDLQDSSM-YRQIVGSLIYLT-ITRPDISYSVGVISRYMQNPKKSHLEAVRRVLRYIKGTVSYGLMYKKGEDC----SVLGYCDADYAGDHDTRRSTTGYMFMLGSGAVSWCSKRQPTVSLSTTEAEYRAAAMAAQESTWLIQLMQDLHQPVDAEIPLLCDNQSAIRLAENPVFHARTKHVEVHYHFLREKVLQGEIAMRHVATHEQVADMFTKSLSPGKYEKF 374          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8445.16618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GNA3_AEDAL3.030e-5232.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A284QR88_ARMOS1.780e-4932.23Uncharacterized protein n=2 Tax=Armillaria TaxID=4... [more]
A0A284R853_ARMOS5.020e-4931.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001131AAB88.140e-4932.09Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A182GPU0_AEDAL2.460e-4734.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GKV7_AEDAL1.800e-4633.33Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A182H1Z6_AEDAL4.360e-4530.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0007EFD71D3.460e-4431.30uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1Y1INB1_KLENI4.820e-4433.33Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
UPI0007F045135.580e-4430.70uncharacterized mitochondrial protein AtMg00810-li... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8445contigS-dermatodea_contig8445:3455..4495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score179.5
Seed ortholog evalue2.7e-42
Seed eggNOG ortholog4081.Solyc11g062200.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1041
Cds size1017
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.8859859-CDS-S-dermatodea_contig8445:3454..44711622925343.8859859-CDS-S-dermatodea_contig8445:3454..4471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8445 3455..4471 -
1694079869.6203768-CDS-S-dermatodea_contig8445:3454..44711694079869.6203768-CDS-S-dermatodea_contig8445:3454..4471Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8445 3455..4471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.8973901-UTR-S-dermatodea_contig8445:4471..44951622925343.8973901-UTR-S-dermatodea_contig8445:4471..4495Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8445 4472..4495 -
1694079869.633492-UTR-S-dermatodea_contig8445:4471..44951694079869.633492-UTR-S-dermatodea_contig8445:4471..4495Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8445 4472..4495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8445.16618.1prot_S-dermatodea_contig8445.16618.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8445 3455..4471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8445.16618.1

>prot_S-dermatodea_contig8445.16618.1 ID=prot_S-dermatodea_contig8445.16618.1|Name=mRNA_S-dermatodea_contig8445.16618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=339bp
MYRRNEDGRLAILMTYVDDTLFTGNDDNEIQRMYKHLLNKYEGRDLRVPD
KLLGVRITVGEGNITLDQRSYAEDIVIEGVGSTDVRRSNMPLDPGMDLSA
REEFEEELNTSRFPYATILGKLMFLAGMMRPDISNSVRELGRRAASPCLR
HWRGLQHVLRYVAATLDVCLRYGKGVDNDSQQALMGYSDSDLGNDPELRR
SVTGYLLLFNKSPIVWGSKLQGSIALSSSEVEWTGMVQGMRHCLYIRGIL
GEMGLPQGATPWFCENRGAIQAASITGFNGRTRHVDMKLKCSREYIEQQL
FDLQYVPTTKQLADVFTKRLRAPSQTEFVGSVLARRRV*
back to top

mRNA from alignment at S-dermatodea_contig8445:3455..4495-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8445.16618.1 ID=mRNA_S-dermatodea_contig8445.16618.1|Name=mRNA_S-dermatodea_contig8445.16618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1041bp|location=Sequence derived from alignment at S-dermatodea_contig8445:3455..4495- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAACTACGACGAATGCGTGTACTATGTATCGCCGCAACGAGGATGGGCG CCTCGCCATCCTCATGACCTACGTGGACGACACGCTTTTCACCGGCAACG ACGACAATGAGATTCAACGCATGTACAAGCATCTACTGAATAAGTACGAG GGACGAGACCTGCGCGTGCCGGACAAGCTACTCGGTGTGCGCATCACAGT GGGTGAAGGCAACATCACGTTGGATCAACGGTCTTATGCTGAAGACATCG TGATCGAGGGGGTGGGCTCGACCGACGTACGCAGATCCAATATGCCCCTA GACCCGGGTATGGACCTCTCGGCTCGTGAGGAGTTTGAGGAAGAGCTAAA CACTTCACGCTTTCCGTACGCAACGATCCTCGGGAAGCTAATGTTCCTCG CAGGCATGATGAGGCCCGACATCTCCAACAGCGTTCGTGAGCTCGGACGC CGGGCCGCTTCTCCTTGCCTGCGGCACTGGCGAGGGCTACAGCACGTTCT CCGCTACGTCGCGGCGACACTCGACGTCTGCCTACGCTACGGCAAGGGCG TCGACAACGACAGTCAACAAGCACTGATGGGCTACTCAGACTCGGACTTG GGGAACGACCCCGAACTGCGCAGAAGCGTGACTGGCTATCTGCTACTATT CAACAAGTCACCCATCGTCTGGGGGTCAAAGCTGCAAGGTTCGATCGCGC TGTCTAGCTCTGAAGTGGAATGGACAGGTATGGTACAGGGCATGAGGCAC TGCCTATACATTCGCGGCATTCTGGGGGAGATGGGACTTCCACAGGGCGC AACGCCGTGGTTCTGCGAAAATCGTGGTGCCATCCAGGCCGCATCGATCA CAGGCTTTAACGGGCGTACGAGACACGTGGACATGAAGCTGAAGTGCTCA CGGGAGTACATCGAGCAACAGTTGTTCGATCTGCAGTACGTGCCCACGAC TAAACAACTGGCGGACGTTTTTACGAAACGGCTCCGGGCGCCGTCGCAAA CCGAGTTCGTCGGTTCGGTGTTAGCACGGCGAAGGGTGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8445:3455..4495-

>mRNA_S-dermatodea_contig8445.16618.1 ID=mRNA_S-dermatodea_contig8445.16618.1|Name=mRNA_S-dermatodea_contig8445.16618.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at S-dermatodea_contig8445:3455..4495- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCGCCGCAACGAGGATGGGCGCCTCGCCATCCTCATGACCTACGT
GGACGACACGCTTTTCACCGGCAACGACGACAATGAGATTCAACGCATGT
ACAAGCATCTACTGAATAAGTACGAGGGACGAGACCTGCGCGTGCCGGAC
AAGCTACTCGGTGTGCGCATCACAGTGGGTGAAGGCAACATCACGTTGGA
TCAACGGTCTTATGCTGAAGACATCGTGATCGAGGGGGTGGGCTCGACCG
ACGTACGCAGATCCAATATGCCCCTAGACCCGGGTATGGACCTCTCGGCT
CGTGAGGAGTTTGAGGAAGAGCTAAACACTTCACGCTTTCCGTACGCAAC
GATCCTCGGGAAGCTAATGTTCCTCGCAGGCATGATGAGGCCCGACATCT
CCAACAGCGTTCGTGAGCTCGGACGCCGGGCCGCTTCTCCTTGCCTGCGG
CACTGGCGAGGGCTACAGCACGTTCTCCGCTACGTCGCGGCGACACTCGA
CGTCTGCCTACGCTACGGCAAGGGCGTCGACAACGACAGTCAACAAGCAC
TGATGGGCTACTCAGACTCGGACTTGGGGAACGACCCCGAACTGCGCAGA
AGCGTGACTGGCTATCTGCTACTATTCAACAAGTCACCCATCGTCTGGGG
GTCAAAGCTGCAAGGTTCGATCGCGCTGTCTAGCTCTGAAGTGGAATGGA
CAGGTATGGTACAGGGCATGAGGCACTGCCTATACATTCGCGGCATTCTG
GGGGAGATGGGACTTCCACAGGGCGCAACGCCGTGGTTCTGCGAAAATCG
TGGTGCCATCCAGGCCGCATCGATCACAGGCTTTAACGGGCGTACGAGAC
ACGTGGACATGAAGCTGAAGTGCTCACGGGAGTACATCGAGCAACAGTTG
TTCGATCTGCAGTACGTGCCCACGACTAAACAACTGGCGGACGTTTTTAC
GAAACGGCTCCGGGCGCCGTCGCAAACCGAGTTCGTCGGTTCGGTGTTAG
CACGGCGAAGGGTGTGAATGTATCGCCGCAACGAGGATGGGCGCCTCGCC
ATCCTCATGACCTACGTGGACGACACGCTTTTCACCGGCAACGACGACAA
TGAGATTCAACGCATGTACAAGCATCTACTGAATAAGTACGAGGGACGAG
ACCTGCGCGTGCCGGACAAGCTACTCGGTGTGCGCATCACAGTGGGTGAA
GGCAACATCACGTTGGATCAACGGTCTTATGCTGAAGACATCGTGATCGA
GGGGGTGGGCTCGACCGACGTACGCAGATCCAATATGCCCCTAGACCCGG
GTATGGACCTCTCGGCTCGTGAGGAGTTTGAGGAAGAGCTAAACACTTCA
CGCTTTCCGTACGCAACGATCCTCGGGAAGCTAATGTTCCTCGCAGGCAT
GATGAGGCCCGACATCTCCAACAGCGTTCGTGAGCTCGGACGCCGGGCCG
CTTCTCCTTGCCTGCGGCACTGGCGAGGGCTACAGCACGTTCTCCGCTAC
GTCGCGGCGACACTCGACGTCTGCCTACGCTACGGCAAGGGCGTCGACAA
CGACAGTCAACAAGCACTGATGGGCTACTCAGACTCGGACTTGGGGAACG
ACCCCGAACTGCGCAGAAGCGTGACTGGCTATCTGCTACTATTCAACAAG
TCACCCATCGTCTGGGGGTCAAAGCTGCAAGGTTCGATCGCGCTGTCTAG
CTCTGAAGTGGAATGGACAGGTATGGTACAGGGCATGAGGCACTGCCTAT
ACATTCGCGGCATTCTGGGGGAGATGGGACTTCCACAGGGCGCAACGCCG
TGGTTCTGCGAAAATCGTGGTGCCATCCAGGCCGCATCGATCACAGGCTT
TAACGGGCGTACGAGACACGTGGACATGAAGCTGAAGTGCTCACGGGAGT
ACATCGAGCAACAGTTGTTCGATCTGCAGTACGTGCCCACGACTAAACAA
CTGGCGGACGTTTTTACGAAACGGCTCCGGGCGCCGTCGCAAACCGAGTT
CGTCGGTTCGGTGTTAGCACGGCGAAGGGTGTGA
back to top