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Homology
BLAST of mRNA_S-dermatodea_contig8444.16617.1 vs. uniprot
Match: D8LSX2_ECTSI (Similar to intersectin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX2_ECTSI) HSP 1 Score: 327 bits (838), Expect = 1.260e-105 Identity = 217/360 (60.28%), Postives = 243/360 (67.50%), Query Frame = 3
Query: 270 MPPPG-FGRGGGFXXXXXXXXXFGRPGFGPGRW-GPRFGPGLGKSCLIGAIATGAAVAXXXXXXXXXXXXXXRAGYIYVVQS--AGE----PPRAVRAEEGSFIIMRTAVASYQQAAGGEVQFEVQVTMNDSYKYGILRRYSQFDQLRERVAPLLRAVTPPFPPKHGVRSATWGLGAADLEERRVMLQAWLLSLCTAASTNNPALRLPLYDFLETALYYPPEVTAT---PTXXXXXXXAASTVPYATATPYAEPVLGGGAAAYPPHAPA----------VPQSAKSVSDGWAIPMESREASDLKLAMFGPDASGRLAAGRVAEALREGTGAASEDLRTVWELSDIDKDGMLDRDE-VIKW 1283
MP PG FGRGGGF XXXX XXX GP FGPG G L+GA+ATGAA+A XXXXXXXXXX AGYIYVVQ +G+ PPRAVRA E FIIMR A+ASY+ GGEV FEVQ+TMND YKYG+LRRYSQFDQLRERV+ ++R TPPFPPK +RS+T GLG ADLEERR MLQAWL SLCTAAS N PALR+PLYDFLETA+YYPPE T PT A +T P AT PV A A PP A +P S GWA+P ESR+ASDLK+AM GP A+G+L + A ALR GTGA EDLR VW LSDID+DGMLDRDE + W
Sbjct: 1 MPGPGGFGRGGGFRXXXXFXXXXXXXXXXXXXXXGPLFGPGPGPLGLVGALATGAAIAAVVGXXXXXXXXXXXAGYIYVVQEPQSGQVGHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQITMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKSSIRSSTVGLGPADLEERRQMLQAWLQSLCTAASANTPALRVPLYDFLETAMYYPPEAPVTSSDPTAASAQHTAVAT-PAATTATTGVPVAAAYAEALPPAAGTKGVGVPSAGPLPPKPDSTGYGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAW 359
BLAST of mRNA_S-dermatodea_contig8444.16617.1 vs. uniprot
Match: A0A6H5JHJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ6_9PHAE) HSP 1 Score: 159 bits (401), Expect = 8.350e-43 Identity = 98/175 (56.00%), Postives = 108/175 (61.71%), Query Frame = 3
Query: 801 MLQAWLLSLCTAASTNNPALRLPLYDFLETALYYPPEVTAT---PTXXXXXXXAASTVPYATATPYAEPVLGGGAAAYPPHAPAV----------PQSAKSVSDGWAIPMESREASDLKLAMFGPDASGRLAAGRVAEALREGTGAASEDLRTVWELSDIDKDGMLDRDE-VIKW 1283
MLQAWL SLCTAASTN PALR+PLYDFLETA YYPPE T PT A +T P AT PV A A PP A P S DGWA+P ESR+ASDLK+AM GP A+G+L + A ALR GTGA EDLR VW LSDID+DGMLDRDE + W
Sbjct: 1 MLQAWLQSLCTAASTNTPALRVPLYDFLETASYYPPEAPVTSSDPTTASAQHTAVAT-PAATTATTGVPVAAAYAEALPPAAGTKGVGVSSAGPPPPKPDSAEDGWAVPPESRDASDLKMAMAGPSAAGKLTGEQAAVALRTGTGAGQEDLRAVWALSDIDQDGMLDRDEFAVAW 174
BLAST of mRNA_S-dermatodea_contig8444.16617.1 vs. uniprot
Match: A0A6H5JJX9_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX9_9PHAE) HSP 1 Score: 147 bits (372), Expect = 8.710e-40 Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 3
Query: 483 AGYIYVVQS-----AGEPPRAVRAEEGSFIIMRTAVASYQQAAGGEVQFEVQVTMNDSYKYGILRRYSQFDQLRERVAPLLRAVTPPFPPKHGVRSATWGLGAADLEERR 797
AGYIYVVQ PPRAVRA E FIIMR A+ASY+ GGEV FEVQVTMND YKYG+LRRYSQFDQLRERV+ ++R TPPFPPK +RS+T GLG ADLEERR
Sbjct: 9 AGYIYVVQEPQPGQVHAPPRAVRAAETPFIIMRVALASYRTGQGGEVLFEVQVTMNDGYKYGVLRRYSQFDQLRERVSRVIRTTTPPFPPKCSIRSSTVGLGPADLEERR 118
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 330.9 |
| Seed ortholog evalue | 7.1e-88 |
| Seed eggNOG ortholog | 2880.D8LSX2 |
| KEGG ko | ko:K12472 |
| KEGG Pathway | ko04144,map04144 |
| EggNOG free text desc. | endocytosis |
| EggNOG OGs | KOG0998@1,KOG0998@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Phox homologous domain |
| Ec32 ortholog | Ec-26_001740.1 |
| Exons | 5 |
| Model size | 1283 |
| Cds size | 1014 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8444.16617.1 >prot_S-dermatodea_contig8444.16617.1 ID=prot_S-dermatodea_contig8444.16617.1|Name=mRNA_S-dermatodea_contig8444.16617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=338bp
MPPPGFGRGGGFRGGGGFRGGFGRPGFGPGRWGPRFGPGLGKSCLIGAIA TGAAVAAVVGPPPRRRHPPPRAGYIYVVQSAGEPPRAVRAEEGSFIIMRT AVASYQQAAGGEVQFEVQVTMNDSYKYGILRRYSQFDQLRERVAPLLRAV TPPFPPKHGVRSATWGLGAADLEERRVMLQAWLLSLCTAASTNNPALRLP LYDFLETALYYPPEVTATPTTTTATSAAASTVPYATATPYAEPVLGGGAA AYPPHAPAVPQSAKSVSDGWAIPMESREASDLKLAMFGPDASGRLAAGRV AEALREGTGAASEDLRTVWELSDIDKDGMLDRDEVIKW back to topmRNA from alignment at S-dermatodea_contig8444:4794..9259+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8444.16617.1 ID=mRNA_S-dermatodea_contig8444.16617.1|Name=mRNA_S-dermatodea_contig8444.16617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4466bp|location=Sequence derived from alignment at S-dermatodea_contig8444:4794..9259+ (Saccorhiza dermatodea SderLu1190fm monoicous) AAACAGGCCAACACAACAGCAGGACATAACTATTATACAAGTACTGGCAT
CACCTTCGTCAAGGACACCAAACCAACTCCAATATACGGGTGCACAATCG
ATAGCCCGGAAGTCCTCTCCCTCTGCTGTGGGATACTTTTGGCGGCACAC
GCAAGGGCATTTTAGTCTCTCCACTCTCCACGCGATCCTTGCCACTTCAT
CAGCTGCTTTTTCGAGAACATCTACTACATAGCTTCGACCCGAGGAGCCA
TTGAGAGAGCTCGAAGGAGATGCCCCCGCCAGGGTTCGGGCGCGGAGGAG
GCTTCCGGGGGGGTGGAGGCTTTCGGGGGGGCTTCGGCCGCCCAGGGTTT
GGTCCCGGCCGTTGGGGGCCTCGCTTCGGCCCCGGACTTGGTAAGTCGTG
TTATAGGCTTCGTTCCTCATCATGGCCCACCAGGAGTGCGATTCATGTCT
CTCTCTGTCTGGGATGCACTAACCACTAACGAGCGTCCAGAGGGTGTGAT
TCAGGCGCCTGCGTGTAGCGCGCGTGTGTGTCAAAACAGGCAGGGGCGAG
TGTCTCGTCGCAGCAGGCCGCCTGCGCAAAGTGCGTGCGCGACATGAATA
TGCCACAGCCCATGACATGGCCCCCATAGCGTAGTGTCTCGCCTACAGAG
GACGAATACATATTATACTGCTGTAGATGAAAACACGTCTTCTGCAGAGA
TCAAGAGGGCCCACCATTCATATCAGCCAGGTGGCGCACTGACTCCTTTA
CAGCAGCAGTAGTACCTCGGACATGATATTCTTATGATACCGATGCGTGC
ACCCAACTCCCCTGCCCTGCCCTGCCACAATCGCCGCTGCCACTCACTCC
AAGCGCACACGCGTGCCTTACATATCATACCCTAAAATATGGATTTGTTT
TTGCATTTTACAACCGCCCCTCCTTCAAGCGTGTTGGTGTTGGTTTTCTC
TCCTGTGTGACTCCGTCCGACCGCCGCCTGTGATACGGCTTTTCCCAGGC
CTCATCGGAGCTATCGCCACTGGAGCGGCGGTCGCTGCCGTTGTCGGCCC
TCCACCTCGCCGCAGGTGAGCCCCTAAAAATATTGAGCTTGCTATGATGC
GGTAGCTAGCGCAGTCAGTCAAGGTTTTAGAACACTGACGGCAATCGAGT
CAGCTTGCTGTGCTTGCAGAAATACCCCGGTGTCCGCGCTTCCGTCCGAG
CGCGCATCACACTCGTGTGTACAAAGGGGGCGGCTGTATCATGCTCGGGT
GAACACTTCGATCACACTCACGATCGTATGCACAAAGGGGGCGGTTGTAT
CATGCTCGGGTCAACACTTTGGAACTGGAACTCTTAAGGTGTCTTCTTCC
CAAAAGTTCAACATATATATGACAGTATATGTAACTTACGATAGTTTTGT
GTTTCACATGGCTTGCGACTCCTCATTTATGAACACAAACAAGTGGAGTC
CTTCAGCTCCTCCAGGGTTTGATCAAATGAAGAGTTTGGCCCACACCAAG
ATTTTTGCATGCACGGCAGTACACCTCTTTCGCATCCGTTGTCTCAAAAC
AAGGACATTGCATTAATACGACGTATAATATAATACTTTGTACTACTATT
AATATACAGTACAAAAATATGCACATTTTGATAACTCTTTGTACCAATCG
TTTTCTCTTCCGCCGCCTAGCCTCCTCGCCCAAGCCCCCCGGGCTGCACG
CCCGTAAGCAGGCCTGTGATCTATCATACGCCAGTTCCCCCCCCCCTCTC
AGACGCACTCAAACACATCTATCTCGCGATACTCCACAGGCACCCCCCGC
CTCGCGCGGGCTACATCTACGTGGTGCAGTCGGCTGGGGAACCGCCGAGG
GCGGTGAGGGCGGAAGAGGGTTCGTTCATCATCATGCGCACGGCGGTAGC
CTCCTACCAGCAGGCAGCGGGGGGAGAGGTGCAATTCGAGGTCCAGGTAA
ATGCGAGCATGGCAGGACCTGGGTGTTGTTGAGTGCGCCTGGGACTGACA
ATTACAATAAACAATGAAGTAATGAAGTAAGAGCTATGCGTATTTTTGCC
CAAGTGACCCATCAGTAACTTAACTCAGTTATTCCCCGGTAACAGGGTTT
GTAACATCATATAATATCATACACACGGCTGGCTTGGGAAGTTTAGATTT
CGGGGTGGGTTTTCGCAGGCAGGATCAACAAGATAACGGTTATTGTGGAA
GAATACACCAAGCAGTACAATCCAGTTCACATGTACATCCCCAACTCTTC
GGCACACTACTGTACCTAGCTCCAGGGGAAAACCGGAAGCTAGCTATTAC
TATAATATTACGTTCTGTATTCTTTCAGTAAGACTATTTAAGAGGGGCTC
ATCCGCCGGAGGAGGGTTAGTGGTAGCTCAGACAGGCGAATAGCGTTGGC
GGTGCGGAATATTTCGTGGGGGCTTCTCACAAGCAGTGGCCGGCTGCGTG
CGCCCCCACATCTTACAGAACAAAACTGACGATTGATCGCGAGGCCCTCC
TCGACGTTCTTGCCCCATAACCCTGGCGGCATTAATAAACTCGGGTAATC
GATTGGAGTCCGACGTCGCCGCCGCCGTAACGTAGCTCCTACCACTGCCA
ACCATGAATTTTCTGTTACTCGCTCCTTGGCTCAGCTTATTCCCTTTGCT
GTTGCCCTATACTCCGCAAAGACGTTAATATACAAGTATGATAGTGTAGT
GCAGGTATTAGGCCCTTTTGGGATGTACTGACGCTGTTTTCGGGGTTAGG
CCATCTGCCCGCACCGTATTTGAAACGGAACCGTGATCAAACGGCGGTGG
CCACTCCTATCCTCATCCTCGCCAAACATACTATTAATGTACTACTATTA
ATGTAATACTATTCATGTAATACTATTAATGTAACACTGTAGCTGAGGTG
TATAAGGCATGATAAAACATGCCACGCTTAGCTTCCATGCACGGTTGTGG
TGGTGGTGCAATTGTGAGTGCACCCGTCACCGCGATATACTAATGTTATT
ATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCTACAG
TATCCGTAGTGCGGCGATATTCGGCGTAAAAAATCGGACTCAAATTAAAG
AGTAACTTCTAACTGCCTGTCGCTGGACGAGCAGCTTCATCTCCGCACGG
GGACTACTCGCCGCTTCTCTTCGACCGCGGCACAACTCGCCCCCGTGTGC
ACTTGATTAACTCTCCTTTACTTTGCTCCTCCCGTTCCGTTTTGTTTTGG
TCCTGGAAAAGGTGACCATGAATGACAGCTACAAGTACGGCATCTTGAGG
CGCTACTCGCAATTCGACCAGCTCAGAGAACGTGTGGCACCTCTCCTCCG
CGCCGTGACCCCTCCCTTCCCGCCCAAGCATGGCGTGCGTAGCGCCACCT
GGGGACTAGGGGCTGCAGACCTGGAAGAGCGCAGGTCGGCGGATTGCCTC
TTCTTGTTTTCTCTTGCGTGGTCTTGGGCCGGACTTTAGATGTGCCCAAT
TTTACGCGCTTGCGATACACGGTGTCACCTATTGTAGTGTGCGATATTCG
GAGGCAGTGTGCTGCATGCTACAGCAGTCAGTGTGATACGGGCAATTTTT
CCGACCCCACTCGAAAGCAGGCGCCGCTCCGAAGATAAATTACCCCAGAA
ATCTCTGTTTTAGTTTCTTCTCGGCCTGTCAAAAGCGACGCCACCACACC
GATGACAGGTTTAACCCCCCTCTTCGTAAGACCCACTGCTCAGCATTGAC
CCCCCCCTCCCCTCTTTTGAGCCAAAGTTGGAAAAGTAGGAAGGAACGAT
TGGCCATCGGCTATCGATTCGATCCTGTGGGAACAATGCTCCGTTCTCTC
GAGGACGCGTGGTCAATGGTCCAACAGCTAAGGCATGCAATACAGGAGTA
CGCTCTCCCCCCGTCCCTCCCCGCCTCTCACCCCTGCCACCCCTTAACCA
ACCTCGCACGCCACTCTCTCCCATACCAGGGTGATGCTCCAGGCGTGGCT
CCTATCCCTCTGCACGGCCGCCTCAACAAACAACCCGGCCCTGCGCCTCC
CCCTTTACGACTTTCTCGAAACCGCTCTCTACTACCCCCCGGAGGTGACC
GCCACGCCCACCACGACGACCGCGACCAGCGCCGCGGCCAGCACCGTGCC
CTACGCCACGGCTACGCCGTACGCCGAGCCCGTCCTCGGCGGCGGCGCGG
CGGCTTATCCGCCGCATGCTCCCGCGGTCCCGCAGTCGGCCAAGTCGGTG
AGCGACGGGTGGGCCATACCGATGGAGTCGAGAGAGGCTTCGGACTTGAA
GCTCGCTATGTTTGGACCCGACGCGTCCGGGCGGCTGGCGGCGGGGAGGG
TGGCGGAAGCGTTGCGGGAGGGAACGGGGGCCGCATCGGAAGACTTGCGC
ACCGTGTGGGAGCTGTCGGATATCGATAAGGATGGGATGCTTGACCGCGA
TGAGGTGATAAAATGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8444:4794..9259+ >mRNA_S-dermatodea_contig8444.16617.1 ID=mRNA_S-dermatodea_contig8444.16617.1|Name=mRNA_S-dermatodea_contig8444.16617.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at S-dermatodea_contig8444:4794..9259+ (Saccorhiza dermatodea SderLu1190fm monoicous) ATGCCCCCGCCAGGGTTCGGGCGCGGAGGAGGCTTCCGGGGGGGTGGAGG CTTTCGGGGGGGCTTCGGCCGCCCAGGGTTTGGTCCCGGCCGTTGGGGGC CTCGCTTCGGCCCCGGACTTGGTAAGTCGTATGCCCCCGCCAGGGTTCGG GCGCGGAGGAGGCTTCCGGGGGGGTGGAGGCTTTCGGGGGGGCTTCGGCC GCCCAGGGTTTGGTCCCGGCCGTTGGGGGCCTCGCTTCGGCCCCGGACTT GGTAAGTCGTGCCTCATCGGAGCTATCGCCACTGGAGCGGCGGTCGCTGC CGTTGTCGGCCCTCCACCTCGCCGCAGGCCTCATCGGAGCTATCGCCACT GGAGCGGCGGTCGCTGCCGTTGTCGGCCCTCCACCTCGCCGCAGGCACCC CCCGCCTCGCGCGGGCTACATCTACGTGGTGCAGTCGGCTGGGGAACCGC CGAGGGCGGTGAGGGCGGAAGAGGGTTCGTTCATCATCATGCGCACGGCG GTAGCCTCCTACCAGCAGGCAGCGGGGGGAGAGGTGCAATTCGAGGTCCA GGCACCCCCCGCCTCGCGCGGGCTACATCTACGTGGTGCAGTCGGCTGGG GAACCGCCGAGGGCGGTGAGGGCGGAAGAGGGTTCGTTCATCATCATGCG CACGGCGGTAGCCTCCTACCAGCAGGCAGCGGGGGGAGAGGTGCAATTCG AGGTCCAGGTGACCATGAATGACAGCTACAAGTACGGCATCTTGAGGCGC TACTCGCAATTCGACCAGCTCAGAGAACGTGTGGCACCTCTCCTCCGCGC CGTGACCCCTCCCTTCCCGCCCAAGCATGGCGTGCGTAGCGCCACCTGGG GACTAGGGGCTGCAGACCTGGAAGAGCGCAGGTGACCATGAATGACAGCT ACAAGTACGGCATCTTGAGGCGCTACTCGCAATTCGACCAGCTCAGAGAA CGTGTGGCACCTCTCCTCCGCGCCGTGACCCCTCCCTTCCCGCCCAAGCA TGGCGTGCGTAGCGCCACCTGGGGACTAGGGGCTGCAGACCTGGAAGAGC GCAGGGTGATGCTCCAGGCGTGGCTCCTATCCCTCTGCACGGCCGCCTCA ACAAACAACCCGGCCCTGCGCCTCCCCCTTTACGACTTTCTCGAAACCGC TCTCTACTACCCCCCGGAGGTGACCGCCACGCCCACCACGACGACCGCGA CCAGCGCCGCGGCCAGCACCGTGCCCTACGCCACGGCTACGCCGTACGCC GAGCCCGTCCTCGGCGGCGGCGCGGCGGCTTATCCGCCGCATGCTCCCGC GGTCCCGCAGTCGGCCAAGTCGGTGAGCGACGGGTGGGCCATACCGATGG AGTCGAGAGAGGCTTCGGACTTGAAGCTCGCTATGTTTGGACCCGACGCG TCCGGGCGGCTGGCGGCGGGGAGGGTGGCGGAAGCGTTGCGGGAGGGAAC GGGGGCCGCATCGGAAGACTTGCGCACCGTGTGGGAGCTGTCGGATATCG ATAAGGATGGGATGCTTGACCGCGATGAGGTGATAAAATGGGGTGATGCT CCAGGCGTGGCTCCTATCCCTCTGCACGGCCGCCTCAACAAACAACCCGG CCCTGCGCCTCCCCCTTTACGACTTTCTCGAAACCGCTCTCTACTACCCC CCGGAGGTGACCGCCACGCCCACCACGACGACCGCGACCAGCGCCGCGGC CAGCACCGTGCCCTACGCCACGGCTACGCCGTACGCCGAGCCCGTCCTCG GCGGCGGCGCGGCGGCTTATCCGCCGCATGCTCCCGCGGTCCCGCAGTCG GCCAAGTCGGTGAGCGACGGGTGGGCCATACCGATGGAGTCGAGAGAGGC TTCGGACTTGAAGCTCGCTATGTTTGGACCCGACGCGTCCGGGCGGCTGG CGGCGGGGAGGGTGGCGGAAGCGTTGCGGGAGGGAACGGGGGCCGCATCG GAAGACTTGCGCACCGTGTGGGAGCTGTCGGATATCGATAAGGATGGGAT GCTTGACCGCGATGAGGTGATAAAATGG back to top
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