mRNA_S-dermatodea_contig84433.16616.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84433.16616.1
Unique NamemRNA_S-dermatodea_contig84433.16616.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.090e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            QAVNASDFAIAQFRFL+KLMLFHGRQNYRRMSKLV YTFYKN+LMAVPMAW
Sbjct: 1055 QAVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVAYTFYKNILMAVPMAW 1105
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 5.170e-23
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    7 AVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            AVNASDFAIAQFRFL+KLMLFHGRQNYRRMSKLV YTFYKN+LMAVPMAW
Sbjct: 1194 AVNASDFAIAQFRFLQKLMLFHGRQNYRRMSKLVAYTFYKNILMAVPMAW 1243
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 9.700e-18
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            QAVN+SD+A+AQF++LRKL+L HGR NYRRMSKLV Y FYKN+LM++PM W
Sbjct:  272 QAVNSSDYAVAQFKYLRKLLLVHGRWNYRRMSKLVCYVFYKNILMSLPMFW 322
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: D2W4U9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W4U9_NAEGR)

HSP 1 Score: 77.0 bits (188), Expect = 1.640e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            QAVNASD+AI QFRFL++L+L HGR NYRR+SKLVVY FYKN+L  +   W
Sbjct:   18 QAVNASDYAIGQFRFLKRLLLVHGRWNYRRVSKLVVYVFYKNILFFLTQLW 68
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: D2W2K7_NAEGR (Phospholipid-transporting ATPase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2W2K7_NAEGR)

HSP 1 Score: 77.0 bits (188), Expect = 3.660e-15
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            QAVNASD+AI QFRFL++L+L HGR NYRR+SKLVVY FYKN+L  +   W
Sbjct:  858 QAVNASDYAIGQFRFLKRLLLVHGRWNYRRVSKLVVYVFYKNILFFLTQLW 908
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: K3W6Q1_GLOUD (Phospholipid-transporting ATPase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Q1_GLOUD)

HSP 1 Score: 76.3 bits (186), Expect = 6.840e-15
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMAW 156
            QAVN+SD+AIAQFRFL +L+L HGR NYRRMS+LVVY FYKN+L      W
Sbjct:  860 QAVNSSDYAIAQFRFLERLLLVHGRWNYRRMSQLVVYMFYKNILFTAAQYW 910
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A2D4BXB3_PYTIN (Phospholipid-transporting ATPase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXB3_PYTIN)

HSP 1 Score: 75.9 bits (185), Expect = 9.340e-15
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPM 150
            QAVNASD+AIAQFRFL +L+L HGR NYRR+SKL++Y+FYKNVL+ + +
Sbjct:  877 QAVNASDYAIAQFRFLERLLLVHGRFNYRRISKLILYSFYKNVLLVIAL 925
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A7S1C2W0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2W0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 9.620e-15
Identity = 33/49 (67.35%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPM 150
            QAVN+SDFAIAQFRFLR+L+L HGR +YRRMSK+V+Y+FYKN+++ + +
Sbjct:  128 QAVNSSDFAIAQFRFLRRLLLVHGRWSYRRMSKVVLYSFYKNIVITLTL 176
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BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A7S1FZ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZ32_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPMA 153
            QA NASDFAIAQFR+L  L+L HGR N++RMSK+V+YTFYKN+++ V MA
Sbjct:   47 QAANASDFAIAQFRYLETLLLVHGRWNFQRMSKVVLYTFYKNIVLIVLMA 96
[Close]
BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Match: A0A7S2SIW9_9STRA (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIW9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.740e-14
Identity = 33/47 (70.21%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    4 QAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAV 144
            QAVNASDFAIAQFRFL +L+L HGR NYRR SK+++Y+FYKN+++ V
Sbjct:  724 QAVNASDFAIAQFRFLERLLLIHGRWNYRRTSKVIIYSFYKNIVLVV 770
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84433.16616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPG5_9PHAE1.090e-2394.12P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
D7FU18_ECTSI5.170e-2394.00Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A7S4DCU9_HETAK9.700e-1872.55Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
D2W4U9_NAEGR1.640e-1568.63Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
D2W2K7_NAEGR3.660e-1568.63Phospholipid-transporting ATPase n=1 Tax=Naegleria... [more]
K3W6Q1_GLOUD6.840e-1568.63Phospholipid-transporting ATPase n=1 Tax=Globispor... [more]
A0A2D4BXB3_PYTIN9.340e-1569.39Phospholipid-transporting ATPase n=1 Tax=Pythium i... [more]
A0A7S1C2W0_9STRA9.620e-1567.35Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1FZ32_9STRA1.400e-1468.00Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2SIW9_9STRA1.740e-1470.21Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84433contigS-dermatodea_contig84433:176..334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.7476342-CDS-S-dermatodea_contig84433:175..3341622925343.7476342-CDS-S-dermatodea_contig84433:175..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84433 176..334 -
1694079869.5229373-CDS-S-dermatodea_contig84433:175..3341694079869.5229373-CDS-S-dermatodea_contig84433:175..334Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84433 176..334 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84433.16616.1prot_S-dermatodea_contig84433.16616.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84433 176..334 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84433.16616.1

>prot_S-dermatodea_contig84433.16616.1 ID=prot_S-dermatodea_contig84433.16616.1|Name=mRNA_S-dermatodea_contig84433.16616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
SQAVNASDFAIAQFRFLRKLMLFHGRQNYRRMSKLVVYTFYKNVLMAVPM
AW*
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mRNA from alignment at S-dermatodea_contig84433:176..334-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84433.16616.1 ID=mRNA_S-dermatodea_contig84433.16616.1|Name=mRNA_S-dermatodea_contig84433.16616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig84433:176..334- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAGGCGGTGAATGCGAGCGACTTCGCGATCGCGCAGTTCAGATTCCT
CCGCAAGCTGATGCTCTTCCATGGGCGGCAAAACTACAGGCGCATGTCGA
AGCTGGTGGTCTACACCTTCTACAAGAACGTTTTGATGGCGGTGCCGATG
GCGTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig84433:176..334-

>mRNA_S-dermatodea_contig84433.16616.1 ID=mRNA_S-dermatodea_contig84433.16616.1|Name=mRNA_S-dermatodea_contig84433.16616.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig84433:176..334- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCAGGCGGTGAATGCGAGCGACTTCGCGATCGCGCAGTTCAGATTCCT
CCGCAAGCTGATGCTCTTCCATGGGCGGCAAAACTACAGGCGCATGTCGA
AGCTGGTGGTCTACACCTTCTACAAGAACGTTTTGATGGCGGTGCCGATG
GCGTGGTGATCGCAGGCGGTGAATGCGAGCGACTTCGCGATCGCGCAGTT
CAGATTCCTCCGCAAGCTGATGCTCTTCCATGGGCGGCAAAACTACAGGC
GCATGTCGAAGCTGGTGGTCTACACCTTCTACAAGAACGTTTTGATGGCG
GTGCCGATGGCGTGGTGA
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