mRNA_S-dermatodea_contig8441.16613.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8441.16613.1
Unique NamemRNA_S-dermatodea_contig8441.16613.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8441.16613.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.240e-29
Identity = 66/127 (51.97%), Postives = 83/127 (65.35%), Query Frame = 1 
Query:   31 KGVKRKYRFISADGWDMVRKRFPLAAEMEYPAGTPPCSTCQEQDEGETQLKLDRRNAKSAEMLNGPSLKGLWRRGGALPPKLTALHRGGVS--------------RDDGAVSSERFFLVEAWWLSAW 369
            K  +RKYR+IS  GW+MV+  FPLA E+EYPAGT PCS C+EQD+ E +LKLD R AKSAE++ GPSLKGLW+R  ALPP+L A  RGG S              R  G  +  RF LV  +W+ ++
Sbjct: 1558 KSGRRKYRWISPRGWEMVKNLFPLAEEVEYPAGTQPCSQCEEQDKDEMKLKLDLRQAKSAELVTGPSLKGLWKRSDALPPRLLAHSRGGSSSSSNSRQASLKARGRPGGGGTLPRFLLV--FWVRSY 1682
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BLAST of mRNA_S-dermatodea_contig8441.16613.1 vs. uniprot
Match: A0A6H5L6A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.000e-12
Identity = 38/70 (54.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   43 RKYRFISADGWDMVRKRFPLAAEMEYPAGTPPCSTCQEQ---------DEGETQLKLDRRNAKSAEMLNG 225
            RKYR+IS  GW+MV+  FPLA E+EYPAGT PCS C+EQ         D+ E +LK   R AKSAE++ G
Sbjct: 1069 RKYRWISPRGWEMVKSLFPLAQEVEYPAGTQPCSQCEEQVVGATTKEQDKDEMKLKRGLRQAKSAELVTG 1138
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8441.16613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKX6_ECTSI3.240e-2951.97Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A6H5L6A7_9PHAE4.000e-1254.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8441contigS-dermatodea_contig8441:3354..8383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.9
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LKX6
Preferred nameUSP48
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons3
Model size412
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8441.16613.1prot_S-dermatodea_contig8441.16613.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8441 3354..8383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.497691-CDS-S-dermatodea_contig8441:3353..34591622925343.497691-CDS-S-dermatodea_contig8441:3353..3459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 3354..3459 -
1694079869.3512478-CDS-S-dermatodea_contig8441:3353..34591694079869.3512478-CDS-S-dermatodea_contig8441:3353..3459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 3354..3459 -
1622925343.510244-CDS-S-dermatodea_contig8441:5916..60621622925343.510244-CDS-S-dermatodea_contig8441:5916..6062Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 5917..6062 -
1694079869.367171-CDS-S-dermatodea_contig8441:5916..60621694079869.367171-CDS-S-dermatodea_contig8441:5916..6062Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 5917..6062 -
1622925343.5229907-CDS-S-dermatodea_contig8441:8224..83831622925343.5229907-CDS-S-dermatodea_contig8441:8224..8383Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 8225..8383 -
1694079869.3769863-CDS-S-dermatodea_contig8441:8224..83831694079869.3769863-CDS-S-dermatodea_contig8441:8224..8383Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8441 8225..8383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8441.16613.1

>prot_S-dermatodea_contig8441.16613.1 ID=prot_S-dermatodea_contig8441.16613.1|Name=mRNA_S-dermatodea_contig8441.16613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=137bp
MPCRKKTSSRKGVKRKYRFISADGWDMVRKRFPLAAEMEYPAGTPPCSTC
QEQDEGETQLKLDRRNAKSAEMLNGPSLKGLWRRGGALPPKLTALHRGGV
SRDDGAVSSERFFLVEAWWLSAWRSHHDSSGVLSEPP
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mRNA from alignment at S-dermatodea_contig8441:3354..8383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8441.16613.1 ID=mRNA_S-dermatodea_contig8441.16613.1|Name=mRNA_S-dermatodea_contig8441.16613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5030bp|location=Sequence derived from alignment at S-dermatodea_contig8441:3354..8383- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCATGCCGCAAAAAAACTTCCAGCAGGAAAGGAGTAAAGAGGAAATA
CCGCTTCATTTCCGCCGATGGGTGGGATATGGTACGGAAGCGCTTCCCAC
TTGCGGCGGAAATGGAATACCCCGCCGGAACGCCGCCCTGCAGCACCTGT
CAAGAGCAGGTGAGGTGTAGTATTAGTATTGATAGGGAGGGTGTGTTGCT
TTCAAGCGCACCAGTGTTGTGTCGCTGGCCGTGTTCTTATGCCGGATCAC
TGTATTGTAGTGGTACAATACATGTTGTGAGTGACACGTTACTAGACTAT
GACGCATAAGGTCACTAGACTATGATGATACGGCAGATTAGTCTATGACA
TGTCATGTCTCCGGACTATGACACGTCACGACCTTTGGAGACAAGTAGGC
CTGCGTCCAGGGCTAATACACGTCTATATTATGAATAGTTAAAAACCGCT
TTGCACGTTTTTTTAATAGCGATATAGAGTTGAGCGGTGAAGTATTTACA
AGTGAAGCCAAAGGTCATAGTGATTTCAGAGGGGTACATTGTAAACAAGT
GTTGAAAAGAGTAGGATTTTTCACCTCTGTAGCCGTAGGCTAGCTACTAT
TAATAGTAATATTATCGTACAGGGTGAAGACGCCAGTTTGTTTTGTTGCT
GTTGATGTTGCTGTCGGTGTTGTTGTTGGTGACATCGTTTTTTAGTTCCC
TTACGGTATTGGTATTACAGTACTTCGAAGTATAGTTATAGTGCCTCCCT
CATGCAATCCGTGGTCTCACGAGGCAGGGTGTATTGATAGAGGAACTTCA
GCGAACGAAAATGACTCCTCTATAGTGGCGCCCACCACCCGCCAGTACGC
AGTACATCCAATCAAACGATTACATCCGATCAAACAATTACATCCCATCA
AGCAATTACATCCAATCCAATTACACCCCTCAAACAATTGCATCCAATCA
AACGATTACGTGCAATCAAACGATTACATCCAATCAAACGACTACACAAA
ATCAAACGTTTTGTTTTTTGCTTTTGCACACATACTAATATTAGTACTTG
GTATTATTAATATTAATAGTATAATAGACCGCTTCTTCCGAGGTCCGTCT
GTGGTCACAAGGGATCAGATCATCCCATCCCTCTTATCTTATCTTATCTT
ATCCCCGGTATGTTCTCACCTTAGGTTCTTATCGCGCATTGGGTTCGTTC
GGCACCCCACAGGTCGCCGATTTCTCGGTTATGCTTACTCACGCGGTCGC
AATTAATTACAACCAATCAAGCATTACATCAAATCAAACGATTACATCCA
ATCAAACGATTACATCCAATCAAGCAATAACATCCAATCAAACGATGACA
TAAAATCAAACAGTTACATAAAATCAAACAGTTACATAAAATCAAACAAT
TTCATCCTATAAATCAACCCATTACATTCAATCAAACAATTACATCCAAT
CAATCAATTACATCAAAGCACACAATTACATCAAATCAAACAATTACATC
CAATCAAACAAGTACATCCAAACATACAATCAAACAATTACATCCAATCC
TGTTACTGTTAACAGCTATAACAGTTACCGTGTACATCCAATTAGTCCCT
AACTCACACACACATTAGTCCCAGAACGAACCAAAAATTGGTACAACACA
ATACAATACGTCATTTGCTCTTTCAGTAAAGTGTTGAGGGGAGTACTTAT
GGTAAACACCTGTATCCAAACGGACATAGGCCACGCTCCCAACAATGCCG
GGACGGAGTGATATGCCGGGTTTTCGCCGGCCAGGGCTGCGTTGATACGA
TACCAGCTGCTGGCCATTATCCTTGCGTTTGCGACGCGAAACCGATATCT
AGGCCATATGGGTTTATTGAACATACCGGGCACCCAAATGTAGCACATTC
AGTAGGCGTGATTATGACTATACTCCAAGTACCGCAAAGGGACTTTGATC
TCCGTGCGAACGCAGTAGCACCGCACGCACACATAAATAGACGACGGCCA
GTGTGTAACATACTCCAAGAGGATAGATAATCTGCTCGTGAGTTCTCCTG
GCGGGGTACTAATCATAAGCCTATGGTTGCTCCAGAGCGTCCCAACAATC
CATTGTTAGCCAGGTGTCCTATAGGATGTGACGCGTTTCACCTCGTTTGA
GGAGAGACAAGACTCTAAGGTCTCTAAGGTCTCTAAGGTCTCTGAGGTCA
CAGGACACACTGCGTAAACCACCCCATCCCCTATTCCTAGTAGTATATAG
AGTAGACATTATACTAGGTACAATGAATGACATGACAATATCAATAACCT
GACGCCTCTTTTTTCAAACAGGACGAGGGCGAGACTCAGCTGAAGCTCGA
TCGCCGAAACGCCAAGAGCGCGGAGATGTTGAACGGGCCCTCCCTGAAGG
GGCTTTGGCGACGAGGGGGAGCTCTTCCTCCGAAATTGACCGCACTACAC
CGAGGGGGTGTTAGCAGGCAAGCTTCCCACCATGATTAAGTCGGGTTCTA
TGGGCAGGTTGATTGGTTGAGTGATTGGGCAACGTTGGTGGTGATGATGG
TGATGGTGATGATGATGATGATGGTGATGATGGTGATGATGATGATGGAG
GTGATGATGATGGTGATGATGATGATGATGGTGATGGTGACGATGGTGAT
GATGATAGTGATGATGATGATGATGGTGATGATGGTAATGATGATGACGG
TAATAATGATAGTGGTGATGATAGTGATGATGATGGTGGTGATGGGGATG
ATGATGGTGATGATGGTAATAATGATAGTGATGATGATGATGGTAATGAT
GGTGATGGTGATGATGCTGGTGACGATGATGGTGATGATGATGATGATGA
TGGTGATGATGGTGGTGATGATGATGATGATGATGATGATGAAGGTGGTG
ATGATAGTGATGATGAAGGTGGTGATGATACTCGAGTTCGTTTTAGCGTC
AAGTAAATGTCGTAACTACAACAAAGTATGGCGCACAAGTGTAACATGGT
GCATGCATCCTGTATCATCCCTTTCGGCATGGTTCGACGCGAAAACAGGC
TCGGTGCCAAACTAAGTGGTAACATCTGATCTGTCGGTGGACAGATCTGT
CGGTGGACAGATCTGTTGACAGATTCGGCGACAGCTAGTTGCGTAGGATG
GCGTTTGATCAATCAATTTATCGGTAAGGCAGATTTTGTTGGACACGCTC
TTGTTTTCTCGGTAAGGCAGATTTGTTGAGACACGCTCCTCGCGGACACG
CAACGTCAACGTTTTTAAACGCCTCTCCCGTTTCACGATTGGTTTCACCA
TGTGCCGTGTAAAATACCCGCGTGTGTCCCGGTATGAATGAGGCATGTGT
GCCTGTATGAATGAGGCATGTGTCCCGGTATGAGTGAGGCATGTGTCCCG
GTATGAGTGAGGCATGTGCACCGGTATGAATGACACATGTGTCCCGGTGT
AAATGAGGCATGTGTCCCGGTATGAATGAGGCATGTGTCCCGGTATGCGT
GACACATGTGTCCCGGTGTGAATGGGGCATGTGTGCCGGTGGGAATGAGG
CATGTGTGCCGGTATGAATGAGGCATGTGTCCCGGTATTCGTGACACATG
TGCCCCGGTATGAATGAGGCATGTGTCCCGGTATTCGTGACACATGTGTC
CCGGTGTGAATGAGGCATGTGTCCCGGTATGAATAAGGCATGTGTGCCGG
TATGAGTGAGGCATACGTGCCGGTATGCGTGACACATGTGTCCCGGTGTG
AATGAGGCATGTTTGCCGGTTTGAGTCAGGCGTGCGTCCCGGTATGAGTG
AGGCACGTGGGCGGTATGAGTGAGGCACTGATGGTAGCAGGTGCAGTCCC
GACTCTGCTGCGGTGCCGCTAACTCTCCGAACGCTTTTTTTTTGGCGCGT
GTCTGGTCCTCACTTGCCTGTTACATACTGGTACATTTTTCATCCCGACG
CAGACAGTAGTGCGTTCGATGACTTTAACTATTAATATAGTACTTCGAAG
TATAACTATAGTCAAACTATAATATGGCTATGGCTATGGCTGGGTAGCAG
TAACGGGGGTAATAGATAAGTAGGTATGTAGCTGAAGGCGTGGAGGACGT
GATTAGCCATTTGCTGTAGGAGAGGGGGGTCCTTAGCAGACCTAAGTGCT
GTCATACTGCGACGTGCTGTTCCTGCGTCCGAGCGTGGTGTTCATTCTCA
TTGGGTTGATTGATTTTTTATTGATTTTTCTTGCGCTGATTGGTTGCTTG
TTTTCGTGTAGATTGGTTGATATATTTGATTGTTCTTGTGTTGATAGGTT
AAGTGATCGTTTCTTTGTGTTGATTGGCTGATTCATTCGTTGATGGAGTG
ATTCATTAATTGATTGGTTGGTGGATGCATTGATGGATTGTCACGCTTAC
ATCCGACCAGCCCGCCAATGGTTGCCGATCCCGCTCATGGTCAGATGAGA
AATCCAGAAATCGAGGCGTGGTTAAAATCTTCGGTCTTAGCAGGAGAGCT
ATTAATAGACGCGCTGTTTTTTTGTTGGTCTTGTAGTCCGTGGGTGGACC
GAGCCTCAATGCTTCGGTGATGCTCCGTCGGTAGTGGAAACCCCCAGGAT
GGATGCTTCGACCGGGGACAGATATTTGTATGGGTCTAAGAAATGTGCTC
TCCACAAGTTACCTAAACGTGTGTATAATTTGATTATAACACAAGAGAGT
TCCGTTTTTTGTCCATTTTGGGCTTTCGTCTCATGTCACCACGAGAGCGG
AGTCGGCGACCCCTTGCGTGGGCCGATCGCTTGTATCATACCATATGTAA
GTTTCATCAGCTACCGAATCAACCCATCAATCCATCAAAATGCTTGATTC
AACCAATCAGTCCATCCAAATGTTAATGTTTAGCTGTGGCGAACTGTTTG
ATTGCGCTGTTGATCATACTCCAGAGACGACGGGGCGGTGTCGAGCGAGC
GGTTCTTTCTGGTGGAGGCGTGGTGGCTGTCGGCGTGGCGATCACATCAC
GACAGCTCCGGCGTGCTTTCGGAACCTCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8441:3354..8383-

>mRNA_S-dermatodea_contig8441.16613.1 ID=mRNA_S-dermatodea_contig8441.16613.1|Name=mRNA_S-dermatodea_contig8441.16613.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at S-dermatodea_contig8441:3354..8383- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCATGCCGCAAAAAAACTTCCAGCAGGAAAGGAGTAAAGAGGAAATA
CCGCTTCATTTCCGCCGATGGGTGGGATATGGTACGGAAGCGCTTCCCAC
TTGCGGCGGAAATGGAATACCCCGCCGGAACGCCGCCCTGCAGCACCTGT
CAAGAGCAGATGCCATGCCGCAAAAAAACTTCCAGCAGGAAAGGAGTAAA
GAGGAAATACCGCTTCATTTCCGCCGATGGGTGGGATATGGTACGGAAGC
GCTTCCCACTTGCGGCGGAAATGGAATACCCCGCCGGAACGCCGCCCTGC
AGCACCTGTCAAGAGCAGGACGAGGGCGAGACTCAGCTGAAGCTCGATCG
CCGAAACGCCAAGAGCGCGGAGATGTTGAACGGGCCCTCCCTGAAGGGGC
TTTGGCGACGAGGGGGAGCTCTTCCTCCGAAATTGACCGCACTACACCGA
GGGGGTGTTAGCAGGACGAGGGCGAGACTCAGCTGAAGCTCGATCGCCGA
AACGCCAAGAGCGCGGAGATGTTGAACGGGCCCTCCCTGAAGGGGCTTTG
GCGACGAGGGGGAGCTCTTCCTCCGAAATTGACCGCACTACACCGAGGGG
GTGTTAGCAGAGACGACGGGGCGGTGTCGAGCGAGCGGTTCTTTCTGGTG
GAGGCGTGGTGGCTGTCGGCGTGGCGATCACATCACGACAGCTCCGGCGT
GCTTTCGGAACCTCCGAGACGACGGGGCGGTGTCGAGCGAGCGGTTCTTT
CTGGTGGAGGCGTGGTGGCTGTCGGCGTGGCGATCACATCACGACAGCTC
CGGCGTGCTTTCGGAACCTCCG
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