mRNA_S-dermatodea_contig844.16612.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig844.16612.1
Unique NamemRNA_S-dermatodea_contig844.16612.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig844.16612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig844contigS-dermatodea_contig844:9205..13847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig844.16612.1prot_S-dermatodea_contig844.16612.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig844 9205..13847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.4099276-CDS-S-dermatodea_contig844:9204..92781622925343.4099276-CDS-S-dermatodea_contig844:9204..9278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 9205..9278 -
1694079869.285772-CDS-S-dermatodea_contig844:9204..92781694079869.285772-CDS-S-dermatodea_contig844:9204..9278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 9205..9278 -
1622925343.420793-CDS-S-dermatodea_contig844:10053..101441622925343.420793-CDS-S-dermatodea_contig844:10053..10144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 10054..10144 -
1694079869.2941742-CDS-S-dermatodea_contig844:10053..101441694079869.2941742-CDS-S-dermatodea_contig844:10053..10144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 10054..10144 -
1622925343.4314246-CDS-S-dermatodea_contig844:11412..115051622925343.4314246-CDS-S-dermatodea_contig844:11412..11505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 11413..11505 -
1694079869.302352-CDS-S-dermatodea_contig844:11412..115051694079869.302352-CDS-S-dermatodea_contig844:11412..11505Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 11413..11505 -
1622925343.444202-CDS-S-dermatodea_contig844:13067..132071622925343.444202-CDS-S-dermatodea_contig844:13067..13207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 13068..13207 -
1694079869.31687-CDS-S-dermatodea_contig844:13067..132071694079869.31687-CDS-S-dermatodea_contig844:13067..13207Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 13068..13207 -
1622925343.4627047-CDS-S-dermatodea_contig844:13798..138471622925343.4627047-CDS-S-dermatodea_contig844:13798..13847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 13799..13847 -
1694079869.3314543-CDS-S-dermatodea_contig844:13798..138471694079869.3314543-CDS-S-dermatodea_contig844:13798..13847Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig844 13799..13847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig844.16612.1

>prot_S-dermatodea_contig844.16612.1 ID=prot_S-dermatodea_contig844.16612.1|Name=mRNA_S-dermatodea_contig844.16612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=149bp
RRQQFLCARHFTEGHQAGASALQVATSREEATGMGEEYGGKVAFPKTTRQ
AARVERFPQQAQKTFGSLDGGPSERKRMRVVEREKHDPSQEAQQVPALVR
ESSLTLSSTGFMPLASQDSSDQFRVSATQNLAREERATSRAHRRSTSSG
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mRNA from alignment at S-dermatodea_contig844:9205..13847-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig844.16612.1 ID=mRNA_S-dermatodea_contig844.16612.1|Name=mRNA_S-dermatodea_contig844.16612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4643bp|location=Sequence derived from alignment at S-dermatodea_contig844:9205..13847- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGACAACAGTTTCTTTGTGCTCGACACTTCACGGAGGGCCATCAAGG
TAAGCACCTCGACGTACACACATTATCTACTCATGTATGATACAATGTCA
GCTGATGTAGTGGCGTTGTTTCGTGAGCTTCAAGGTTCGGTCCATTTGGC
TTTTCACTATTGATCTGGGTTTTATCGGTCCCTGTGGACGTAGTTTGTTA
TTGTTGCAGTCTCCAGTGCGCGGACCAGTCCTTCGCGGGCCGTGCGTAGG
CGTGGACGGAACATCTCACGTCAGCTGGGCATCACACTGCACGCGCGTAC
CACTATATTCCTATTGTCATGCTTTGTCTCTTGATCCGATAGGCTCGAAT
TGGAGCATCACGATGTACCAGGAGCACAGCTCGCAGATGTCTTCCATTAC
TGTATTGCGATGGTGTGAGAATGCATATCAAGCACCCGCCGTGTGTGCTC
GTTTCGTCATCGAGTTATCTGTGTTGCATCGTTGCCGGAAACGCTCACGA
CCCGCGCATGGCCGCTGGCTGTTGGTGTGTCAGCAAATATATATATTTTT
AGACTCTCGCCATGATCTTCACGTGTTGGCAGCTTCCTGTCTTGAGACGA
ATCTACTCGTTTGTTCCACGGTTGTGAATTTGGTGTGTAGCTGGAGCGTC
AGCCTTGCAGGTAGCAACGTCAAGGGAGGAGGCGACGGGAATGGGAGAGG
AATATGGTGGGAAGGTTGCATTCCCGAAGACAACGAGGCAGGCAGCGAGG
GTCGAGCGCTTTCCTCAGCAAGCGCAGAAGGTGTGTGTGCTGCTTTCCTT
GGAGCAGTACTATGGTGTACCAATTATAGTTTGTAGTGGCGGGGGGATAG
GGAATGGGGAGGGCTACACCTGTTGCCTGGCCCACACTTGTTTGCTTGCG
AAATTGTAGAGATGTGGATTCAACCTGGATCCAACCAACCAGCTGTGGGA
GCGCCCCGCCCGGTGGAAGTATTTTGCAGCAAAGAGAGACCACGCAGAGC
CCCCGAAGCTCGCCCCGATTGTATACATTACCGACCACACCGGCGTTAAG
AGTGCTTGCGGCCGTTTTGTTTCCAAAGAAAAGCTAAGAACATAGAAACA
GCGTGGGTGATTGTGAACTAACGTAATTTGGAATTCGCGGAGAAATCACA
AGGAACCTATGTATTTTCTGTGGAGAACTGAGACTCTGCGTGGCCTTGTC
GCCTTTCGTGCCTCAGAGAGGAACCGTTGCCGAAAGTCGATGTCAATTGG
TACTTCACAGTCCAGGCGCTTTCGGCGTTCGAGCCCGCAATGCCAAGCGC
AGATGAGACCTTGTCCTGATCCCGAGTGCTGATTTCTACTTCCGTTGCTC
TCTCCTGTTGCCGTCGGCAATGATAACACATACGGGTTGGCCTCACTCCC
TGTGGAAGCGAAAGGGGACCTTATGGCGCGCTGTCCGATGTGAATATATC
CTAACAGAACTCCTTGGCGCCTTCGTATTGTTTGCCTTCGCCTGACACAG
TTTCTGAAAAATGGAAAGGGGAATACAAGCAGAGGCCGTGCTGAAAAACG
GAGGGTATCGTTGTTCTGGGGTCCCAACATTTCAACAATCTATAACGTTG
ATATGCGATGCTGCGGTGACCACCATCGCCTCCGCAGAGGCACTTGGTTT
ATCACAGCGAGCGCGTCATGATTTGGTTGGTACCGGCCGAAGGTTGACTT
CCCAACCCATCAAATAAGTTGCGGCCGCCGATTTAGCCATCGAAAACGCC
GATGAAGCAGGTGCCCTCTACAGCCAAAGCGTCGAACTGCCGGGCATTTG
GAGGCTAACTAGACTTGCAGTTTGGACAAACTACTACCCATCAGCGACAG
CAGCAGCCTTTTGCCGCACTGTGACTTGGTAATGCTGCACAAGCTGTCGG
GTGTTCGTTGGAACTTGAAGTCGCCAAAGGTTTTCCGTCCAAAGGACCTG
TATTTTGAGACAGGGTGACGGCGTGCAATGCCTAAGAAAGCGCCCCTGGC
AGATAGCCTTAGTCACCACCGTCCCGTAGAGCCCTACGGCAGGTCTTTGG
GGCTATTTCACACCTTGATGGCCTAACACATAGTATTTCCTTCATCGACC
GCGGCGGCTTTGACACTCCAGCCCTTTGTGCAGGTGGAATCCATGTGGTC
ATCGACTGTCGACCTGCTGTATTGTTGCCCATGAAGGTGTACTGCAACAC
CTGTTGTTGGGAACCCTGATAGCTCCCCTTAACATGCACCGCAAGCCACG
ATACTGTTTATTTTGTGTGTGGAAGTCGAACGTACAGATTCATTTTGGTA
ATTTGTAAAGCATACTGACACACTCTACGAACTTGTCGACAGACATTCGG
AAGCTTGGACGGTGGTCCTTCAGAGAGGAAACGGATGCGAGTTGTTGAAA
GGGAGAAGCACGACCCATCGCAAGAGGCACAGCAGGTATGTATCGATCAC
ACAGGGTACGGTGGGATTATGTTTTGTGATACGCCTTATGTTGTTCCGAG
GGGTCCCGAACACACAGCAGTCGGCCATACGAATTTTGGAAGTTGTGAAA
TCGTTGATGTGCAGGGGGCTGGGAATTGATGCAGTCCATATTACTTTGTT
GGTTCTTGCAGCAGGTGCAGTACATCGAGTACACCACCTGACGGTACACC
CAAGCTGGCTAACTGAATGTAGGTGGTATTTGCGTATGTTCGTTCATGCT
GCAGGCGGTAAACTAACTCGAGTTGAAACTCTTACCGAACGTCAAAATTC
CCAATTCCAATGGCAGTTCTTCTCTTTGTATTTTTTCTCGTATACCTCAT
CGAGGTTGAGGTTGTGTTACTTTTACTCCCACCCCCCGCAAACTCGGCAA
GAAGGCGAAAGGGGGGCAAGCTGTAGGCCTAGGCCGGTACCATGTGACCA
GGCCTCGCCCTGCCCAGCCTCCAACGCCGAGCCGGCCAAAGACTAAGCAC
CCGCCCAGCCCCGCCCCGATCAGTACCGATGTCACATGCGAGACACGGCA
ATCCTGTTCGTCACTAGCTTCCACTCTGTACCTAGTCTCGGTTGATGGGT
TTTCCGGTCGCCGTCACCAGTAACTAGCATATCCGACACCCTCCCAACAG
ATCCTCACGTACACTTGATGAGCGCCATACCTCTATCCGCCTTGTTTCTT
CAAAATGCCCGAGGCTACATCGCCCGCGCAGAGATGCGTCACACCTTCAC
GTGGGGTGGTACACTCGTGATGAATACGCCAGCAAACCTCGCGAAAACGT
TTGATGGACCGCCTCCTCCGCAATGCCCCCCCCGCCCTCGTAGACTCCCA
ATCGGGCAACAAGGGTGCCCTCTACCGCACCTTGTAGGTATCGGTTATCA
CTGCTCCATAGCTGTCTTAGGGGTAACATGGTGGAGGTCTACCTTCAGGA
TTTCTCAGACCACTAGTCTACCCAATGGCATTGCATAGGTGAAACCTTCG
TCACTAATTGGTCCTTTTGTTTGCCCCCGTTTGGTCCTGGTAGAGCTCTT
CCGCTAGATAGTATTAGATGCCTTCTCCACAGCAGGTCTCAGGATGACAC
CAACTCAGCCTCATACGAGATCGACCGATTGCCGGCGTGCCGTCTCCGGT
AGCCAGCACATGTACCGTGATCGTTTCACGCGAAGGTTCAATGGTTTGTC
ATACATGTTGCCCATGTGTAACCCCCGATTTGCGTGCGCGTCTTCCGTTT
CAGGTTCCAGCACTCGTCCGGGAATCGTCTCTAACCCTGTCTTCCACGGG
ATTCATGCCACTCGCATCACAGGACAGCAGCGATCAATTCCGAGGTGCCT
ACCTTTGCGAGGCCATTACAAAGCCTGGTAGACTGCTTGCGTTATGATGC
GTTTCCTGAAGCATAGTAGTATCTCTTTAGTGTTTCCGTACTCCGCCAGT
GTAGTCGCTGAGGTTAGGTTGCCTTGCTACTTGCTTCCCGGATATGTTTA
TGATGTATACAGGCATCGCGGGTTTGAAACTGCTGCTGTGCTATGGCTGC
TGTTGTACAATCGTCTTGCCCACGTTTCCTCTCTGTTCTGTTATTGCTGT
TGTTATCGCCCTCGTGGGTACATCTGCCACTTACTCTATGATCCAGTAGT
TTTGTTTTCAAGTGCTCGCAGGAAGCTCGTCTGGGAGACAAGCAGGCAAC
GGCATTGCCTCGTAAGAGGAACATCCATAAGTTCGAGTATGGTATTTCTT
CCTATGTTTTTGTAGCTACTCTCAGCTCACCACGACTCGACCGAAACCAG
GTCAATTGGTTGTTCGGTAACTTAATTTATCCGAATTGAATCATTGATGT
TGATGGGTTGATGGCTCACAAACGTGTAGTCGTGGAGGTGGCAACACGTG
TTGCCGCGGGCCTACGTTTTGATGATAATTGTGGCTGTGAGTGAGGGAAG
CAGGCGGTACTTGTTGCTCACCAAACAGGGCCTTCGAACACGGGCAGACA
GCTACCTGCGATTTCCTCACTACCCCAAAATTCCCCACTACTGCAAACGT
AACGAAACCCGTCCAGCTGTGATACCCCGGCCGTTTTCCCTGCCCACGTC
TTAAACTGCCGCTCTCAAGTTTCAGCAACGCAGAACCTTGCCCGGGAAGA
AAGGGCCACGTCGCGGGCACACAGACGATCGACGAGTTCTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig844:9205..13847-

>mRNA_S-dermatodea_contig844.16612.1 ID=mRNA_S-dermatodea_contig844.16612.1|Name=mRNA_S-dermatodea_contig844.16612.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig844:9205..13847- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGACAACAGTTTCTTTGTGCTCGACACTTCACGGAGGGCCATCAAGA
GACGACAACAGTTTCTTTGTGCTCGACACTTCACGGAGGGCCATCAAGCT
GGAGCGTCAGCCTTGCAGGTAGCAACGTCAAGGGAGGAGGCGACGGGAAT
GGGAGAGGAATATGGTGGGAAGGTTGCATTCCCGAAGACAACGAGGCAGG
CAGCGAGGGTCGAGCGCTTTCCTCAGCAAGCGCAGAAGCTGGAGCGTCAG
CCTTGCAGGTAGCAACGTCAAGGGAGGAGGCGACGGGAATGGGAGAGGAA
TATGGTGGGAAGGTTGCATTCCCGAAGACAACGAGGCAGGCAGCGAGGGT
CGAGCGCTTTCCTCAGCAAGCGCAGAAGACATTCGGAAGCTTGGACGGTG
GTCCTTCAGAGAGGAAACGGATGCGAGTTGTTGAAAGGGAGAAGCACGAC
CCATCGCAAGAGGCACAGCAGACATTCGGAAGCTTGGACGGTGGTCCTTC
AGAGAGGAAACGGATGCGAGTTGTTGAAAGGGAGAAGCACGACCCATCGC
AAGAGGCACAGCAGGTTCCAGCACTCGTCCGGGAATCGTCTCTAACCCTG
TCTTCCACGGGATTCATGCCACTCGCATCACAGGACAGCAGCGATCAATT
CCGAGGTTCCAGCACTCGTCCGGGAATCGTCTCTAACCCTGTCTTCCACG
GGATTCATGCCACTCGCATCACAGGACAGCAGCGATCAATTCCGAGTTTC
AGCAACGCAGAACCTTGCCCGGGAAGAAAGGGCCACGTCGCGGGCACACA
GACGATCGACGAGTTCTGGGTTTCAGCAACGCAGAACCTTGCCCGGGAAG
AAAGGGCCACGTCGCGGGCACACAGACGATCGACGAGTTCTGGG
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