mRNA_S-dermatodea_contig84382.16608.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84382.16608.1
Unique NamemRNA_S-dermatodea_contig84382.16608.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: D7FHF9_ECTSI (U2 small nuclear ribonucleoprotein auxiliary factor large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.630e-26
Identity = 50/59 (84.75%), Postives = 57/59 (96.61%), Query Frame = 1
Query:    4 QEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            +EECEKFGSVKSVHIPRPST S+ EKPG+G+VFVAFDA+DS++KAAASLRARTFDGRKV
Sbjct:  208 KEECEKFGSVKSVHIPRPSTTSEAEKPGVGYVFVAFDAVDSASKAAASLRARTFDGRKV 266          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: B3MBN0_DROAN (Splicing factor U2AF subunit n=1 Tax=Drosophila ananassae TaxID=7217 RepID=B3MBN0_DROAN)

HSP 1 Score: 58.5 bits (140), Expect = 2.120e-8
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            +Q+EC K+G V+S+ IPRP    D  K G G VFV F+++D   KA  +L  R F GR V
Sbjct:  359 IQQECAKYGDVRSLKIPRPIPKGDSPKRGCGKVFVQFESVDDCQKAMRALSGRKFSGRIV 418          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A2C5XCZ7_9PEZI (Splicing factor U2AF subunit n=2 Tax=Ceratocystis TaxID=5157 RepID=A0A2C5XCZ7_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 2.620e-7
Identity = 23/60 (38.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            + EEC KFG++  + IPRP++ S ++ PG+G ++V F+  +++ KA  +L  R F  R V
Sbjct:  518 VHEECSKFGTISELKIPRPTSGSSKQSPGVGKIYVKFETKEAAGKALRALAGRKFSDRTV 577          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A3P3YJC5_PLABS (RRM domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YJC5_PLABS)

HSP 1 Score: 55.1 bits (131), Expect = 3.450e-7
Identity = 25/61 (40.98%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMS-DQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            ++EEC+KFG V+ V IP+PS    + + PG+G ++V FD++D ++ A   L+ R+F+G+ V
Sbjct:  277 VREECQKFGPVEQVWIPKPSADGPENDPPGVGKIWVQFDSVDHASAARDVLKTRSFNGKLV 337          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A0F4YUB3_TALEM (Splicing factor U2AF subunit n=1 Tax=Rasamsonia emersonii CBS 393.64 TaxID=1408163 RepID=A0A0F4YUB3_TALEM)

HSP 1 Score: 54.7 bits (130), Expect = 4.890e-7
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            +Q+EC K+G V  + IPRP T   ++ PG+G ++V FD+++S+ KA  +L  R F  R V
Sbjct:  476 VQDECNKYGQVLELKIPRP-TGGSRQSPGVGKIYVKFDSVESATKALKALAGRKFSDRTV 534          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A061HM12_BLUGR (Splicing factor U2AF subunit (Fragment) n=1 Tax=Blumeria graminis f. sp. tritici 96224 TaxID=1268274 RepID=A0A061HM12_BLUGR)

HSP 1 Score: 54.3 bits (129), Expect = 6.520e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            ++EECEKFG V  + +PRP+  S Q   G+G +FV FD  +S+AKA  SL  R F  R V
Sbjct:  295 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 353          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A6P4IX60_DROKI (splicing factor U2AF 50 kDa subunit-like n=1 Tax=Drosophila kikkawai TaxID=30033 RepID=A0A6P4IX60_DROKI)

HSP 1 Score: 54.3 bits (129), Expect = 6.570e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            ++EECEKFG V+SV +PRP  +  ++ PG G VFV FD+     KA   L  R F+GR V
Sbjct:  319 IREECEKFGVVRSVEMPRP--IEGEDVPGCGNVFVLFDSALDCQKAKEELCKRNFNGRAV 376          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: F4PE51_BATDJ (Splicing factor U2AF subunit n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4PE51_BATDJ)

HSP 1 Score: 54.3 bits (129), Expect = 6.690e-7
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            +QEECEKFG++  + IPRP  +S Q   G+G +FV FD +  SA A  +L  R F  R V
Sbjct:  479 IQEECEKFGTILDIAIPRP--VSGQSNAGVGKIFVKFDNVKQSASAQHALAGRKFADRVV 536          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: N1J9F2_BLUG1 (Splicing factor U2AF subunit n=2 Tax=Blumeria hordei TaxID=2867405 RepID=N1J9F2_BLUG1)

HSP 1 Score: 54.3 bits (129), Expect = 6.700e-7
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            ++EECEKFG V  + +PRP+  S Q   G+G +FV FD  +S+AKA  SL  R F  R V
Sbjct:  518 VKEECEKFGKVLDMKVPRPTGGSRQSN-GVGKIFVKFDTSESAAKALRSLAGRKFADRTV 576          
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Match: A0A6A6BU92_9PEZI (Splicing factor U2AF subunit n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BU92_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASLRARTFDGRKV 180
            ++EEC+KFG V  + IPRPS    +  PG+G ++V +D  +S+ KA  +L  R FD R V
Sbjct:  466 VREECQKFGQVLDLKIPRPS--GSRTNPGVGKIYVKYDTPESAQKALRALAGRKFDDRTV 523          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84382.16608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHF9_ECTSI3.630e-2684.75U2 small nuclear ribonucleoprotein auxiliary facto... [more]
B3MBN0_DROAN2.120e-846.67Splicing factor U2AF subunit n=1 Tax=Drosophila an... [more]
A0A2C5XCZ7_9PEZI2.620e-738.33Splicing factor U2AF subunit n=2 Tax=Ceratocystis ... [more]
A0A3P3YJC5_PLABS3.450e-740.98RRM domain-containing protein n=2 Tax=Plasmodiopho... [more]
A0A0F4YUB3_TALEM4.890e-741.67Splicing factor U2AF subunit n=1 Tax=Rasamsonia em... [more]
A0A061HM12_BLUGR6.520e-748.33Splicing factor U2AF subunit (Fragment) n=1 Tax=Bl... [more]
A0A6P4IX60_DROKI6.570e-748.33splicing factor U2AF 50 kDa subunit-like n=1 Tax=D... [more]
F4PE51_BATDJ6.690e-746.67Splicing factor U2AF subunit n=2 Tax=Batrachochytr... [more]
N1J9F2_BLUG16.700e-748.33Splicing factor U2AF subunit n=2 Tax=Blumeria hord... [more]
A0A6A6BU92_9PEZI1.250e-643.33Splicing factor U2AF subunit n=1 Tax=Aplosporella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84382contigS-dermatodea_contig84382:480..680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.4e-21
Seed eggNOG ortholog2880.D7FHF9
KEGG koko:K12818,ko:K12837,ko:K16487
KEGG Pathwayko03040,map03040
EggNOG free text desc.pre-mRNA 3'-splice site binding
EggNOG OGsKOG0120@1,KOG0120@2759
EC3.6.4.13
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925343.133409-CDS-S-dermatodea_contig84382:479..6801622925343.133409-CDS-S-dermatodea_contig84382:479..680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84382 480..680 -
1694079869.084317-CDS-S-dermatodea_contig84382:479..6801694079869.084317-CDS-S-dermatodea_contig84382:479..680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84382 480..680 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84382.16608.1prot_S-dermatodea_contig84382.16608.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84382 480..680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84382.16608.1

>prot_S-dermatodea_contig84382.16608.1 ID=prot_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
LQEECEKFGSVKSVHIPRPSTMSDQEKPGIGFVFVAFDAIDSSAKAAASL
RARTFDGRKVARVLAS*
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mRNA from alignment at S-dermatodea_contig84382:480..680-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84382.16608.1 ID=mRNA_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at S-dermatodea_contig84382:480..680- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGGAGGAGTGCGAAAAATTCGGGAGCGTAAAGTCGGTGCACATCCC GCGGCCCAGCACGATGAGCGATCAGGAGAAGCCCGGCATAGGCTTCGTGT TCGTGGCCTTCGACGCTATTGACTCTTCCGCTAAGGCTGCGGCGAGCCTC AGGGCCAGGACGTTTGACGGCCGGAAGGTAGCGCGCGTGCTTGCATCATA A
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Coding sequence (CDS) from alignment at S-dermatodea_contig84382:480..680-

>mRNA_S-dermatodea_contig84382.16608.1 ID=mRNA_S-dermatodea_contig84382.16608.1|Name=mRNA_S-dermatodea_contig84382.16608.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig84382:480..680- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCAGGAGGAGTGCGAAAAATTCGGGAGCGTAAAGTCGGTGCACATCCC
GCGGCCCAGCACGATGAGCGATCAGGAGAAGCCCGGCATAGGCTTCGTGT
TCGTGGCCTTCGACGCTATTGACTCTTCCGCTAAGGCTGCGGCGAGCCTC
AGGGCCAGGACGTTTGACGGCCGGAAGGTAGCGCGCGTGCTTGCATCATA
ACTGCAGGAGGAGTGCGAAAAATTCGGGAGCGTAAAGTCGGTGCACATCC
CGCGGCCCAGCACGATGAGCGATCAGGAGAAGCCCGGCATAGGCTTCGTG
TTCGTGGCCTTCGACGCTATTGACTCTTCCGCTAAGGCTGCGGCGAGCCT
CAGGGCCAGGACGTTTGACGGCCGGAAGGTAGCGCGCGTGCTTGCATCAT
AA
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