prot_S-dermatodea_contig8438.16607.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8438.16607.1
Unique Nameprot_S-dermatodea_contig8438.16607.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length110
Homology
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 9.630e-34
Identity = 66/84 (78.57%), Postives = 75/84 (89.29%), Query Frame = 0
Query:    5 GGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDG 88
            GG +G  SEFGAARGVDFRGVSFVLNVDFPPT SSYTHR+GRTARGGASGTALSL++ KD+ QC+TLQ +Q+SQP+L  PSLDG
Sbjct:  475 GGHRGEDSEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQSSQPSLAAPSLDG 558          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.890e-27
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 0
Query:   12 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQ 75
            SEFGAARGVDFRGVSFVLNVDFPPT SSYTHR+GRTARGGASGTALSL++ KD+ QC+TLQ +Q
Sbjct:  539 SEFGAARGVDFRGVSFVLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQ 602          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A6V2D6B0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D6B0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.290e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   12 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMG 103
            SE+G +RG+DFRGVSFV+NVDFPP   SYTHRIGRTARGGASG ALSL+  + + Q + LQ +Q SQP LP  S+   GG P    L  + G
Sbjct:  118 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGSVGVGGGGPSNGDLRTATG 209          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A7S4VQY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQY4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.050e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   12 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMG 103
            SE+G +RG+DFRGVSFV+NVDFPP   SYTHRIGRTARGGASG ALSL+  + + Q + LQ +Q SQP LP  S+   GG P    L  + G
Sbjct:  388 SEYGVSRGLDFRGVSFVVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQESQPPLPSGSVGVGGGGPSNGDLRTATG 479          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.180e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0
Query:    4 AGGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALP 82
            AGG KG  +E+G ARG+DFRGV FV+NVDFPP+  SYTHR+GRTARGGASGTALSL+  +   +   L  +QASQPALP
Sbjct:  373 AGGPKGD-AEYGVARGIDFRGVKFVMNVDFPPSARSYTHRVGRTARGGASGTALSLLCERAPAEVAALAEVQASQPALP 450          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A7S2VYS2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYS2_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.880e-22
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 0
Query:   12 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGN 92
            SE+G +RG+DFRGVSFV+NVDFPP+  SYTHRIGRTARGGASG ALSL+ + D  Q   L  +Q SQP LP   L G  GN
Sbjct:  370 SEYGVSRGLDFRGVSFVVNVDFPPSCQSYTHRIGRTARGGASGVALSLVNMDDTEQESMLSRVQESQPPLP---LAGTSGN 447          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A4D9D2A0_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2A0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-21
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 0
Query:   13 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLD 87
            E+G  RG+DFR V+FV+NVDFP +  +YTHRIGRTARGGA+GTALSL+  +D  + + L  +QASQPALPP   D
Sbjct:   15 EYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKEDAREQEVLAAVQASQPALPPSEGD 89          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: A0A1Z5KBW1_FISSO (ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW1_FISSO)

HSP 1 Score: 96.7 bits (239), Expect = 4.640e-21
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 0
Query:   12 SEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSL 86
            SE+G ARG+DFR VSFV+NVDFPP+  SY HR+GRTARGGA G ALSL+  K   + QTL  +Q  QPALP   L
Sbjct:  362 SEYGVARGLDFRNVSFVVNVDFPPSAKSYAHRVGRTARGGAKGVALSLVDNKSAEEFQTLLAVQDDQPALPAAEL 436          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-20
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0
Query:   13 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLD 87
            E+G  RG+DFR V+FV+NVDFP +  +YTHRIGRTARGGA+GTALSL+   D  + + L  +QASQPALPP   D
Sbjct:  435 EYGVHRGIDFRAVNFVVNVDFPRSARAYTHRIGRTARGGANGTALSLLNKDDAREQEVLAAVQASQPALPPSEGD 509          
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Match: K0QZR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZR5_THAOC)

HSP 1 Score: 94.7 bits (234), Expect = 2.210e-20
Identity = 52/94 (55.32%), Postives = 63/94 (67.02%), Query Frame = 0
Query:   13 EFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARGGASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVASMGAEG 106
            E+GA+RG+DFRGVSFV+N D PP P SYTHRIGRTARGGASG AL+L+      + +TL  IQ SQP+    S  G+G    RE+     G EG
Sbjct:  384 EYGASRGLDFRGVSFVVNFDMPPNPESYTHRIGRTARGGASGVALTLVDGSVAEEAETLLDIQESQPSR---SAAGSGDGELREAADDGAGMEG 474          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8438.16607.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE7_ECTSI9.630e-3478.57DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KX88_9PHAE1.890e-2784.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6V2D6B0_9STRA1.290e-2558.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4VQY4_9STRA3.050e-2558.70Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A835ZDE1_9STRA8.180e-2365.82DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2VYS2_9STRA3.880e-2264.20Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A4D9D2A0_9STRA1.870e-2161.33Helicase C-terminal domain-containing protein n=1 ... [more]
A0A1Z5KBW1_FISSO4.640e-2162.67ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fist... [more]
W7TVX7_9STRA1.630e-2061.33Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
K0QZR5_THAOC2.210e-2055.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 15..85
e-value: 5.7E-18
score: 67.3
NoneNo IPR availablePANTHERPTHR24031:SF96ATP-DEPENDENT RNA HELICASE DDX56-RELATEDcoord: 17..65
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 17..65
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 16..51
e-value: 1.2E-9
score: 38.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..89
score: 9.374
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 16..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8438contigS-dermatodea_contig8438:3926..5661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8438.16607.1mRNA_S-dermatodea_contig8438.16607.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8438 3926..5663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8438.16607.1 ID=prot_S-dermatodea_contig8438.16607.1|Name=mRNA_S-dermatodea_contig8438.16607.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
SKGAGGSKGGGSEFGAARGVDFRGVSFVLNVDFPPTPSSYTHRIGRTARG
GASGTALSLIVVKDKTQCQTLQTIQASQPALPPPSLDGAGGNPERESLVA
SMGAEGAAER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase