mRNA_S-dermatodea_contig84357.16605.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84357.16605.1
Unique NamemRNA_S-dermatodea_contig84357.16605.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 1.070e-30
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 NKKCVRCEEFAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGHYVTTLPDDMFNLINMQVCV 207
            N K  RCEEFA+AI GLNAAYL+RIKAQI+KWVQNLRAQHLEVQLD +GHYVTTLPDDMFNLINMQ+ V
Sbjct:  353 NTKVERCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQISV 421
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BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.220e-30
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = 1 
Query:    1 NKKCVRCEEFAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGHYVTTLPDDMFNLINMQVCV 207
            N K  RCEEFA+AI GLNAAYL+RIKAQI+KWVQNLRAQHLEVQLD +GHYVTTLPDDMFNLINMQ+ V
Sbjct:  190 NTKVERCEEFAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQISV 258
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BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.260e-16
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   22 EEFAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGHYVTTLPDDMFNLINMQVCV 207
            ++FA+AIV LN+ YL RIKAQIMKWV NL+AQ  E+    DG ++TT PDDMFNL+N+Q+ V
Sbjct:  378 DKFAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQISV 439
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BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Match: A0A8J2SHR9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHR9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.540e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   28 FAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGHYVTTLPDDMFNLINMQVCV 207
            F EA   L A YL+R+  Q+  W  N+RA+    +LD+ G  VTT P+DMF ++ +QV +
Sbjct:  616 FNEAAEKLMAQYLARVGDQVEGWFGNIRAKKAAPRLDEHGRPVTTRPEDMFQIVQLQVSI 675
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BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 48.9 bits (115), Expect = 5.930e-5
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = 1 
Query:   28 FAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGHYVTTLPDDMFNLINMQVCV 207
            FA A   L   YL RI  Q+  W   +RA+  E + D  G  VTT P+DMF +I MQV V
Sbjct:  565 FATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQVGV 624
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84357.16605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G5L8_ECTSI1.070e-3084.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE2.220e-3084.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA1.260e-1661.29Exocyst complex component Sec6-domain-containing p... [more]
A0A8J2SHR9_9STRA3.540e-641.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5W6_AURAN5.930e-545.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84357contigS-dermatodea_contig84357:302..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue7.8e-26
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExocyst complex component Sec6
Ec32 orthologEc-00_008950.1
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.9985883-CDS-S-dermatodea_contig84357:301..5081622925342.9985883-CDS-S-dermatodea_contig84357:301..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84357 302..508 +
1694079869.0154307-CDS-S-dermatodea_contig84357:301..5081694079869.0154307-CDS-S-dermatodea_contig84357:301..508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84357 302..508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84357.16605.1prot_S-dermatodea_contig84357.16605.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84357 302..508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84357.16605.1

>prot_S-dermatodea_contig84357.16605.1 ID=prot_S-dermatodea_contig84357.16605.1|Name=mRNA_S-dermatodea_contig84357.16605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
NKKCVRCEEFAEAIVGLNAAYLSRIKAQIMKWVQNLRAQHLEVQLDQDGH
YVTTLPDDMFNLINMQVCV
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mRNA from alignment at S-dermatodea_contig84357:302..508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84357.16605.1 ID=mRNA_S-dermatodea_contig84357.16605.1|Name=mRNA_S-dermatodea_contig84357.16605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at S-dermatodea_contig84357:302..508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACAAAAAATGTGTCAGGTGCGAGGAATTCGCGGAGGCCATCGTTGGCCT
GAACGCCGCCTACCTGTCGAGAATCAAGGCCCAGATCATGAAGTGGGTGC
AAAATCTCCGCGCGCAGCACCTCGAGGTCCAGCTTGACCAGGACGGGCAC
TACGTCACTACCCTGCCGGACGACATGTTCAACCTGATCAACATGCAGGT
GTGTGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84357:302..508+

>mRNA_S-dermatodea_contig84357.16605.1 ID=mRNA_S-dermatodea_contig84357.16605.1|Name=mRNA_S-dermatodea_contig84357.16605.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig84357:302..508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACAAAAAATGTGTCAGGTGCGAGGAATTCGCGGAGGCCATCGTTGGCCT
GAACGCCGCCTACCTGTCGAGAATCAAGGCCCAGATCATGAAGTGGGTGC
AAAATCTCCGCGCGCAGCACCTCGAGGTCCAGCTTGACCAGGACGGGCAC
TACGTCACTACCCTGCCGGACGACATGTTCAACCTGATCAACATGCAGGT
GTGTGTGAACAAAAAATGTGTCAGGTGCGAGGAATTCGCGGAGGCCATCG
TTGGCCTGAACGCCGCCTACCTGTCGAGAATCAAGGCCCAGATCATGAAG
TGGGTGCAAAATCTCCGCGCGCAGCACCTCGAGGTCCAGCTTGACCAGGA
CGGGCACTACGTCACTACCCTGCCGGACGACATGTTCAACCTGATCAACA
TGCAGGTGTGTGTG
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