mRNA_S-dermatodea_contig8433.16603.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8433.16603.1
Unique NamemRNA_S-dermatodea_contig8433.16603.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Match: A0A6H5KQY7_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY7_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.030e-48
Identity = 102/156 (65.38%), Postives = 113/156 (72.44%), Query Frame = 1 
Query:    1 MDEPTAVVGD--IVLSDWLDE--LPLASLNLPDLGEEGGEGVGIQGQVEVIKGQREHDDDAEVAGDSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGALTVLAAYGALREHPLQAGVNSPQQAFSEMDFNRDGEVSFDEFARWYSMSSALD 456
            ++ PT  V D  +VLSDWLDE   PL    LP LG    E    QG VEV+  Q   DD+  V   SAPFRFQQLIQ MWA LSRG QL YLG +G+A+VK AL+VLAAY ALREHPLQ GV +PQQAFSEMDFNRDGEVSFDEF RWYSMS+ALD
Sbjct:  132 VEVPTGGVKDSVVVLSDWLDESQAPLGLAGLPGLGNR--EEHLNQGLVEVVGSQAGGDDEDGVGDGSAPFRFQQLIQQMWATLSRGHQLEYLGNEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNRDGEVSFDEFVRWYSMSTALD 285
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BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Match: D7G573_ECTSI (GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G573_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 2.690e-48
Identity = 107/176 (60.80%), Postives = 123/176 (69.89%), Query Frame = 1 
Query:    1 MDEPTAVVGD--IVLSDWLDELPLASLNLPDLGEEGGEGVGI-QGQVEVIKGQREHDDDAEVAGDSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGALTVLAAYGALREHPLQAGVNSPQQAFSEMDFNRDGEVSFDEFARWYSMSSALDGQ-QRPXXXXXAGTTTANSGN 516
            ++ PT  V D  +VLSDWLDE   ASL LP L   G     + QG VEV+  Q   DD+  V   SAPFRFQQLIQ MWA LSRG+QL YLG +G+A+VK AL+VLAAY ALREHPLQ GV +PQQAFSEMDFN DGEVSFDEF RWYSMS+ALD + Q+       G  +A SGN
Sbjct:   59 VEGPTDDVEDSVVVLSDWLDESQ-ASLGLPGLPGLGNREEHLNQGLVEVVGSQANGDDEDGVGDGSAPFRFQQLIQQMWATLSRGNQLEYLGKEGKAKVKQALSVLAAYSALREHPLQTGVENPQQAFSEMDFNSDGEVSFDEFVRWYSMSTALDEKPQQLPEQANVGPASARSGN 233
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BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Match: A0A835YJV9_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJV9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.030e-24
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = 1 
Query:  151 REHDDDAEVAG----DSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGALTVLAAYGALREHPLQAGVNSPQQAFSEMDFNRDGEVSFDEFARWYSMSS 447
            RE   DA  AG     SAPFRFQ+LI  MW  L +G  L YLG++GQARVK A+ VLAA  ALREHP + GV SP++ F+EMDF+ +GEV+F+EF RWY  S+
Sbjct:   91 REGGVDARGAGAYDLSSAPFRFQRLISAMWRELRKGGALEYLGSEGQARVKRAMIVLAAMAALREHPRRDGVLSPKKIFAEMDFDSNGEVTFEEFVRWYEGSA 193
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BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Match: A0A7S4DFJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFJ0_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.390e-13
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = 1 
Query:    7 EPTAVVGDIVLSDWLDELPLASLNLPDLGEEGGEGVGIQGQVEVIKGQREHDDDAEVAGDSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGALTVLAAYGALREHPLQAGVNS--PQQAFSEMDFNRDGEVSFDEFARWYSMS 444
            EP  VV   VL+DWLDE    S  LP                    G   + D+ ++A    P +F++++++MW  L+   +L YL    QA +K AL V+ A+ +L EHP      S  P QA+ E D N DG+++F+EF RWY  S
Sbjct:   71 EPEQVV---VLTDWLDEDDADSQELPSSSS--------------ALGFARYQDENDLA--DVPQKFKRMVKDMWEELTSEGELDYLSEAEQALIKKALAVITAFSSLNEHPAYTYGTSRNPFQAYQEADANGDGDLTFEEFDRWYRAS 199
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BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Match: A0A4D9D784_9STRA (EF-hand domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D784_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.930e-12
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  157 HDDDAEVAGDSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGALTVLAAYGALREHPLQA-GVNSPQQAFSEMDFNRDGEVSFDEFARWYSMS 444
            HDD    A    P R Q+ +  +W  + RGD+++YL A+ + RVK  L VLA +  L +HP Q     S +  F + D NRDG++SF+EF RWY+ S
Sbjct:  157 HDDGQ--AAQQLPVRLQREVNLVWYEIQRGDRMAYLRAEERERVKQQLVVLAFFRTLFDHPSQVLNTQSAEACFQQADVNRDGQLSFEEFLRWYTAS 251
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8433.16603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KQY7_9PHAE1.030e-4865.38EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G573_ECTSI2.690e-4860.80GTP diphosphokinase n=1 Tax=Ectocarpus siliculosus... [more]
A0A835YJV9_9STRA5.030e-2457.28EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4DFJ0_HETAK1.390e-1335.14Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D784_9STRA3.930e-1241.24EF-hand domain-containing protein n=2 Tax=Monodops... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8433contigS-dermatodea_contig8433:5649..8176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue1.3e-43
Seed eggNOG ortholog2880.D7G573
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
EggNOG free text desc.HD domain containing 3
EggNOG OGsCOG0317@1,KOG1157@2759
EC2.7.6.5
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons3
Model size536
Cds size534
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8433.16603.1prot_S-dermatodea_contig8433.16603.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8433 5649..8176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.869892-CDS-S-dermatodea_contig8433:5648..58671622925342.869892-CDS-S-dermatodea_contig8433:5648..5867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 5649..5867 +
1694079868.9536726-CDS-S-dermatodea_contig8433:5648..58671694079868.9536726-CDS-S-dermatodea_contig8433:5648..5867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 5649..5867 +
1622925342.8827872-CDS-S-dermatodea_contig8433:6370..65201622925342.8827872-CDS-S-dermatodea_contig8433:6370..6520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 6371..6520 +
1694079868.969054-CDS-S-dermatodea_contig8433:6370..65201694079868.969054-CDS-S-dermatodea_contig8433:6370..6520Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 6371..6520 +
1622925342.8960195-CDS-S-dermatodea_contig8433:8011..81761622925342.8960195-CDS-S-dermatodea_contig8433:8011..8176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 8012..8176 +
1694079868.980018-CDS-S-dermatodea_contig8433:8011..81761694079868.980018-CDS-S-dermatodea_contig8433:8011..8176Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 8012..8176 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8433.16603.1

>prot_S-dermatodea_contig8433.16603.1 ID=prot_S-dermatodea_contig8433.16603.1|Name=mRNA_S-dermatodea_contig8433.16603.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=178bp
MDEPTAVVGDIVLSDWLDELPLASLNLPDLGEEGGEGVGIQGQVEVIKGQ
REHDDDAEVAGDSAPFRFQQLIQNMWAGLSRGDQLSYLGADGQARVKGAL
TVLAAYGALREHPLQAGVNSPQQAFSEMDFNRDGEVSFDEFARWYSMSSA
LDGQQRPPPPQSAGTTTANSGNVTPTSS
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mRNA from alignment at S-dermatodea_contig8433:5649..8176+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8433.16603.1 ID=mRNA_S-dermatodea_contig8433.16603.1|Name=mRNA_S-dermatodea_contig8433.16603.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2528bp|location=Sequence derived from alignment at S-dermatodea_contig8433:5649..8176+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGAGCCAACCGCTGTGGTCGGCGACATAGTGCTCTCCGACTGGCT
GGACGAGCTGCCGCTTGCGTCGCTGAACTTGCCTGATCTCGGCGAGGAAG
GTGGCGAGGGAGTTGGCATCCAGGGTCAGGTGGAAGTGATCAAGGGGCAA
CGCGAGCATGATGATGATGCTGAGGTAGCCGGCGACAGCGCACCATTCCG
CTTCCAGCAGCTCATCCAGGTGACGCCTGGCGCCGGAAGGTTGCGCTTCT
GCGACACGGGAAAGGGGGGTTGGCTGCTTCTGTGTTTTGGTTGACCAGAA
AGCAAAGCATGGAGAGCGGGTTTAGTATTAGCCAGGGACACATGAAAGTT
GGCATCCAGTAAACCCCAAGTACGTGGTGGACGCTTGTAATAATCCTATT
AATAGCCTATTGTAGCATGAGTCGGGAAAAGACTCCGCTCCAACCTGCAA
GTTGCTGTCTCACCCGAACGAATGCTGGGTTGACAACTCCTGTACTCTGT
CTGTACAAGACTGGAAGAAGAGTATACTACAACAGCACACCAAAATGCCA
CACGGTATCCTGCTACCCGTGCTATATCTGCATGCCGCGTCACCGAGCGA
TGCGCCCTTCAAGCCGCTTGCGATGAGGAAGACGGCACAGGGAGTACCCG
CCTTTGCCAGTAAAATCTGCTGCCGTATGCTCTCTACACCTACTTGTACG
CATGGCACTACACGGCACGCAGAACATGTGGGCTGGGCTGAGCAGAGGCG
ACCAGCTCTCCTACCTCGGTGCCGACGGGCAGGCTCGCGTTAAGGGCGCC
CTTACGGTGTTGGCGGCTTACGGCGCGTTGCGGGAGCACCCCCTTCAGGC
TGGCGTCAACAGCCCTCAACAGGTACTGCTTTGATGATCATACTGTAGTG
TTCGTTGTACAGTTCTCAAAAGTCACAGCAGTCCAGTATGCATAGTGAGG
GGGCGCTTTTACAAGCGAGGATACTGCAAAAGCTTTTTCGCCGTATTATA
GATCACATGACGATACGAAAAGTACATACGACACTACTGTAAGTACCTGT
AGAGCAGGAGGACTTGGGATGGTGTCATACTTTGGAAAAAAATTATACTG
TTTGTGTTGATTTGATTTGATTTGATTTGCACACGTATAGCCGATCGGCT
TAATCCGACCCGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAAG
AACTAATCATAACTCAACTTCTACTATACCAGGTACATCGTACCGTCCCT
GGTACTTACTCATAGGTACAAGAAATACGAAATAGCACCCCAGATATAGA
GAAAACGCTAGAAGAGAACTCGGACTCAAAAAATGGAAAATTACTACTGT
TTGTGTACTCTGTAGATATATAACTGGCATTATAATACTCGTACGAAGTA
TAGTATTTTTCCAAAAGTGTCATACTTGTATATATTGGCATTTGCCTGAA
CCGCACCGAACAAGAACACCCTTGACCACAAACGGACATCCTATAGAGAT
TCTACTCGTAGACCTGTACATGCAGTATGCATACCAGCTGTGTTCAACTG
CCGTTGGTTGCATCAAGTATACTACATACATGAGAGACCCGGGCCCCTCG
TGTCGTATGCCATATCATACGAGGCGAGGCTATTCGAGCGCTTGGTTTTG
GCTGTTGCTTCGCGGGATTTGGTGTCTTCGCGGGATTTGACGTCGTGAGA
CTACGGGGTGCTTGGCCTCTGGTCGGTCGTCTGGTGTTGCTTGCTCGTCG
GCGTGGTCCTAAGTCTGAGAATTCATAATGTGTGCTGTGTGTTTGTGTTT
GGTGTCGACATTGTGGACAAGTCGCGACACAACCAGCCTGTTCGCCGATG
CAGAAAACTCAGGCAGTTGCCCCCGTGTGCATGCATTATACCGTACGTGA
TGTCGTATGTACGGTTATACCGATGGAAGGAAGCACGTTCAAATGTTCAA
ATCGTCAACTCTAGTCGTACATACAGATCATCCGCACAGCACGATCATGT
CTCGAGCTCTGGGCGTTTACGGCAACCCGACCGATTCGACGCCGAAGCCT
TGCGCCTCAGACACGACGTGCCACTGGTTGTCGATTTAAACGCGCGGGTT
GTGCTCGTAGAGCAGTCCCTGAGTTTCGACATGCGTAGAGCGGGAGTTCA
ATCCAAACGAGCGTTTATTCGATGCATCCCGCTTCGCAGGGGTAGAGCTA
CATCCCTGTCACGAGCTATGATTCCGCTATGTATCCTTCGACGCTGCCAT
CCAATCACCCACCACATAGACCCACTCGATACTCTCACCCGTCGACCGCC
ACAACGTTTTGAATCATATTGTACCGCCGGCGGGCGAAAATTGCTCGCTC
TGTCGTGCATCAGGCGTTCTCCGAGATGGACTTCAATAGGGATGGCGAGG
TATCCTTTGACGAGTTCGCGCGCTGGTACTCGATGAGCTCCGCCCTCGAT
GGGCAACAGCGGCCTCCGCCCCCGCAGTCGGCGGGCACCACCACCGCCAA
CAGCGGCAACGTAACCCCGACCTCGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8433:5649..8176+

>mRNA_S-dermatodea_contig8433.16603.1 ID=mRNA_S-dermatodea_contig8433.16603.1|Name=mRNA_S-dermatodea_contig8433.16603.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig8433:5649..8176+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGAGCCAACCGCTGTGGTCGGCGACATAGTGCTCTCCGACTGGCT
GGACGAGCTGCCGCTTGCGTCGCTGAACTTGCCTGATCTCGGCGAGGAAG
GTGGCGAGGGAGTTGGCATCCAGGGTCAGGTGGAAGTGATCAAGGGGCAA
CGCGAGCATGATGATGATGCTGAGGTAGCCGGCGACAGCGCACCATTCCG
CTTCCAGCAGCTCATCCAGATGGATGAGCCAACCGCTGTGGTCGGCGACA
TAGTGCTCTCCGACTGGCTGGACGAGCTGCCGCTTGCGTCGCTGAACTTG
CCTGATCTCGGCGAGGAAGGTGGCGAGGGAGTTGGCATCCAGGGTCAGGT
GGAAGTGATCAAGGGGCAACGCGAGCATGATGATGATGCTGAGGTAGCCG
GCGACAGCGCACCATTCCGCTTCCAGCAGCTCATCCAGAACATGTGGGCT
GGGCTGAGCAGAGGCGACCAGCTCTCCTACCTCGGTGCCGACGGGCAGGC
TCGCGTTAAGGGCGCCCTTACGGTGTTGGCGGCTTACGGCGCGTTGCGGG
AGCACCCCCTTCAGGCTGGCGTCAACAGCCCTCAACAGAACATGTGGGCT
GGGCTGAGCAGAGGCGACCAGCTCTCCTACCTCGGTGCCGACGGGCAGGC
TCGCGTTAAGGGCGCCCTTACGGTGTTGGCGGCTTACGGCGCGTTGCGGG
AGCACCCCCTTCAGGCTGGCGTCAACAGCCCTCAACAGGCGTTCTCCGAG
ATGGACTTCAATAGGGATGGCGAGGTATCCTTTGACGAGTTCGCGCGCTG
GTACTCGATGAGCTCCGCCCTCGATGGGCAACAGCGGCCTCCGCCCCCGC
AGTCGGCGGGCACCACCACCGCCAACAGCGGCAACGTAACCCCGACCTCG
TCCGCGTTCTCCGAGATGGACTTCAATAGGGATGGCGAGGTATCCTTTGA
CGAGTTCGCGCGCTGGTACTCGATGAGCTCCGCCCTCGATGGGCAACAGC
GGCCTCCGCCCCCGCAGTCGGCGGGCACCACCACCGCCAACAGCGGCAAC
GTAACCCCGACCTCGTCC
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