mRNA_S-dermatodea_contig8433.16602.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8433.16602.1
Unique NamemRNA_S-dermatodea_contig8433.16602.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8433.16602.1 vs. uniprot
Match: D7G574_ECTSI (RME-8_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G574_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 3.850e-65
Identity = 133/183 (72.68%), Postives = 148/183 (80.87%), Query Frame = 3 
Query:  285 MSYVRSNNPFASSEAPSSRTSARAMHRKSGTPSTSTASHASPTRASSVPSAIGSL-GFGSNEVESDQDTETEGEVNTAEPWKQAIGDLVAPRTFAARFFVTRLGFMRRKCRRMMAFTADRLYIVKVDDGKAKASYPLKSVQLAPSDKVNQGKGIILTSDIGNVRHPYKCRDRTSLLAAFAELQ 830
            MSYVRS NPFA+   P SR S      KS T         SP+RAS+VPSA+ ++ G+G N+ +SDQDTETE  VN AEPWKQ +G LVAPRTFAARFFVTRLGFMRRKCRRMMAFT+DRL+IV+VDDGKAKASYPLKSVQLAPSDK   GKGIILTSDIGNVRH +KCR+RTSLLAAFAELQ
Sbjct:    1 MSYVRSTNPFAN--GPGSRASM-----KSAT--------TSPSRASAVPSAMSTMSGYGGNDGDSDQDTETESYVNNAEPWKQGVGGLVAPRTFAARFFVTRLGFMRRKCRRMMAFTSDRLFIVRVDDGKAKASYPLKSVQLAPSDK---GKGIILTSDIGNVRHSFKCRNRTSLLAAFAELQ 165
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8433.16602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G574_ECTSI3.850e-6572.68RME-8_N domain-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8433contigS-dermatodea_contig8433:420..4962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size831
Cds size546
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.7576222-CDS-S-dermatodea_contig8433:419..5181622925342.7576222-CDS-S-dermatodea_contig8433:419..518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 420..518 -
1694079868.881307-CDS-S-dermatodea_contig8433:419..5181694079868.881307-CDS-S-dermatodea_contig8433:419..518Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 420..518 -
1622925342.7683797-CDS-S-dermatodea_contig8433:871..10161622925342.7683797-CDS-S-dermatodea_contig8433:871..1016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 872..1016 -
1694079868.89516-CDS-S-dermatodea_contig8433:871..10161694079868.89516-CDS-S-dermatodea_contig8433:871..1016Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 872..1016 -
1622925342.7778902-CDS-S-dermatodea_contig8433:2096..22001622925342.7778902-CDS-S-dermatodea_contig8433:2096..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 2097..2200 -
1694079868.9068987-CDS-S-dermatodea_contig8433:2096..22001694079868.9068987-CDS-S-dermatodea_contig8433:2096..2200Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 2097..2200 -
1622925342.7912621-CDS-S-dermatodea_contig8433:2927..30371622925342.7912621-CDS-S-dermatodea_contig8433:2927..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 2928..3037 -
1694079868.9193137-CDS-S-dermatodea_contig8433:2927..30371694079868.9193137-CDS-S-dermatodea_contig8433:2927..3037Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 2928..3037 -
1622925342.8090186-CDS-S-dermatodea_contig8433:4180..42541622925342.8090186-CDS-S-dermatodea_contig8433:4180..4254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 4181..4254 -
1694079868.9278507-CDS-S-dermatodea_contig8433:4180..42541694079868.9278507-CDS-S-dermatodea_contig8433:4180..4254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 4181..4254 -
1622925342.821898-CDS-S-dermatodea_contig8433:4664..46781622925342.821898-CDS-S-dermatodea_contig8433:4664..4678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 4665..4678 -
1694079868.9358077-CDS-S-dermatodea_contig8433:4664..46781694079868.9358077-CDS-S-dermatodea_contig8433:4664..4678Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8433 4665..4678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.8371544-UTR-S-dermatodea_contig8433:4678..49621622925342.8371544-UTR-S-dermatodea_contig8433:4678..4962Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8433 4679..4962 -
1694079868.9435565-UTR-S-dermatodea_contig8433:4678..49621694079868.9435565-UTR-S-dermatodea_contig8433:4678..4962Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8433 4679..4962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8433.16602.1prot_S-dermatodea_contig8433.16602.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8433 420..4678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8433.16602.1

>prot_S-dermatodea_contig8433.16602.1 ID=prot_S-dermatodea_contig8433.16602.1|Name=mRNA_S-dermatodea_contig8433.16602.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=182bp
MSYVRSNNPFASSEAPSSRTSARAMHRKSGTPSTSTASHASPTRASSVPS
AIGSLGFGSNEVESDQDTETEGEVNTAEPWKQAIGDLVAPRTFAARFFVT
RLGFMRRKCRRMMAFTADRLYIVKVDDGKAKASYPLKSVQLAPSDKVNQG
KGIILTSDIGNVRHPYKCRDRTSLLAAFAELQ
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mRNA from alignment at S-dermatodea_contig8433:420..4962-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8433.16602.1 ID=mRNA_S-dermatodea_contig8433.16602.1|Name=mRNA_S-dermatodea_contig8433.16602.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4543bp|location=Sequence derived from alignment at S-dermatodea_contig8433:420..4962- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCAAACCAGCGGCCGTTGGGCTTGACAACAAGGCATACACCGCCTCGG
CAGCGCACCGCCCACTCTCTGATTCTCCCTGTGGGATACACAGCACACGA
CGAGTGGTCGTCGCGGCGACTGCAAGAGGCAATTTCCGATTTCCCCAACA
GGAAAAACCGTTTGTTTTTAATTCATCACCGGCCAAGGAAGGGCCCGAAC
CCTTTCTCCATCACCGAAGGAGCTCATTCTTCCATCTAAGCGTACCGCCT
GCTACACCAAGCAGGGACGACGAAGCTCCCACCGATGAGCTATGTAAGGT
GAGCTATATACACCCCCCAAGGATCAGGCGTCTCTCCCTGTAGCATCCCG
CGTACGCGATCACCAGCGGCCGTATCTGCTGCTGCCTGCCCTCCTCCTAT
GACACAGCTTAGTCGCTATCTATTTATAAGGAAACAAGTAGAGCCGCAGT
CTTGGGGTCGTATGCAGGGCCCGAAATCACACGAGAATCGTTGAGGGTCT
ACGACTGCGTGCATGTGGCTCGGGCGGGTTGGTTCCGCGTCCGCCTCTTT
AGCCCAACACGTTCGTGGGAGTATGCGCAAACGGCAGACGGTGCAGCGCC
ACTAGGGGCACGAACGCCAGACGTAGAACGTCAGTTCGTCCGTTCATTGA
GCACCGGCTTGCCGTCCATTGCCTTCCTCCCCTCTATCCTCATCTACCCT
GCGTTTAGGTCCAACAATCCTTTTGCATCAAGCGAGGCACCCAGCTCCCG
TACCTCAGCGCGCGCCATGCACCGAAAGTCAGGTGAGTCGCGCATCGCCG
CCAAAGCCTGCCACCCCCCGCCTCCGTCGCTCGTAGTGCGAGGACTCCTG
TCGCCTCTAAGGGTTGTTGCCTCAGGACCCGCTGTAGTATAATAGTCGGC
GGAGAGAGTCGCTTGCGCTGTCAAGTGGAGGTGTGGATTGGGGAATGTCA
TCATACCAACAAATGAAAGCGTTGAACGTTGGTGTGTCGGCGTCGAGAAA
CGGGGAGTTTCTGAGCCAGAGGCGAGCGACCACGGTCGTTCCAGTTTTTG
TGTTCGCGCTTCTCTCGGCCACCAAGAGAGGACAGCACGGCGTGCATGGC
CCCGCCCATCGGGTGGGTGCCTCGGAAAAAAATAGGTCGCCTGTGCCAGA
GCAGCTATGATATTCATGCTGTGTTCGGCACGTGCCAACAAATTATACTA
TACGAAGAACAAGTTGTTATAGATACATCTCTACAGCAGTAACAAGAATC
CATGACACTTTTGTCAAGGTTTCGGGCAATCTCACAACCGTCGTTTTGGT
TTGGGGCCCTGCCGCTGCTGGCCGGTGGTCGCTGCTGATCTCTTCGGCTC
TCTTGAGCGCTCTCTCTGCTAATATAATAGCGAGGCAGTGAAGCTGCGCG
ACGCGTCGTGTTCTCCGTTAGGCTCAAAACAGAGAGCAGGTTATGTTCCA
TACTACAGTATGCTGCGCAGCAGTATGATAGCAGCGTACGACAAACATAC
TGACTTCGCCGTGTCTCCGAGGATCATGTGCAAGAAAAAGGCGAAAAATA
ATGTCCCTATGATACGCACATCAGCTCAACCCGCATCTGAACATCTGAAC
TGGTGAAATGTATTTTTTTGTGGCCGGCATTATTTTTTAAAATGTACATT
CGTTCGACCCGCCCGCCCGCCCGCAAACGCCGGATTTGCGCGCGCTTTTG
GAGGCCGAGCTGCTTGCTGGCTTCCTTGACGTGCGCCGGCCGCGGCATTC
GCCTGGGAAGCGAGGGCAGCGAGCGATCACATCCCAGCTTTTTGTTGTCT
GCCTGCGCATATGCATTTATTATTGGTGTGAGTGTGTGGGTTACTTGCTC
GTGGCCCGAATTTCTGCGAAATCTGAAAATTTATTTGATTCGTTTTTGTG
GGGGCCGACAAAATTGATGTCACAGGAACGCCCAGCACTTCGACAGCGTC
GCACGCATCACCGACCCGCGCCTCGTCCGTGCCGTCGGCAATCGGGAGCT
TGGGCTTTGGGAGCAATGAAGTTGAATCTGATCAGGTACGTGTGATAGTA
GCGACACACGCGCTCTCGGTGGGTTCACCGGGGGGGGTATTTTTTTTTGT
TGGCGAGGGGAGGTGCACGTCAATTTTACTTTTAGTAGCGAGGCTTTGCG
CGTTTGGAAGCAAGGTCAATTTTTTTAATTTGATTTGATTTGATTTGCAC
ACGTATAGCCGATCGGCTTAATCCGACCCGACTTGTGGTCAGACACGCAA
AGAGTCAAATACAGTATGTTAAAGAAGTACTTACTTGCATAACCAGACAG
TTTAGTATTAGTAAATACGTATAATATGACAGAAGTTTACTGTTCGTGTC
TATGAACCACATGTTTTATATAAAATAAAGAGATATAAGGCGTCACAATG
TTCTGATTCCTCACCGCTTCATTTAATTTAATTCGTTATATCCTCTGGTA
CGTGGGTGTCATGCATGTTTCCCGCCCTTTTTTTTCTGCCACTGCTCTGC
CGTGCCTCACGCTACACTTCCTATATGCCAGCAGGGCGGTCAGTCGGTGC
ATGCATAACTATTAGCCCTAAAGTGTTGTCAGCCTACCTCTCAGAACCAG
CGATGTATCGCGTATCATACATATTTATTGCCACAAACAGAGCTACCAAG
GGCGAACATTGTACATAAAAAACAAAAACAAAATTGTACTTGCGACCTGT
GACCTGTGTGCACTAATTATAACTTCGGTGCATGTACACGTGATATGCAT
GTGACCACGCAGGACACGGAGACGGAGGGGGAGGTCAACACGGCTGAGCC
TTGGAAACAGGCGATTGGCGACCTGGTGGCGCCCCGCACTTTCGCTGCAC
GTTTCTTCGTTACCAGGTGGGTGAAAATCGATCAGTCTGTTGATAGCAAA
GTTTGTGTTTCGCGCGGATGAAAGCATCGGAAAAGTAGTTTGGATGTCGG
CTGCCGTGCGTATGATACGGTGCACCTTTGAGGATGGACCTTGAAGGACG
GGGGGCTGTTCGTGTTTCCGACTTGGATGTGTTCGGTGATTAATGCCGTT
CGGTACCCTGCAGGGCACACCAACGGAAATATCCTTCTAGAAGTGTAAGT
AGGCGTTTGAAGTTGTTGGCGTACATCTGTCATGTAATGTGTGATTTAGA
GTAGAAGCCCTCGCGACGAGTACAGTACTGCTATTAGGTGGACTGTTCAT
TTTTGAGAAGCACCTCGCAGTCGTGGGTGTCGCAATGGGTGACATGTTTT
TGGCTACGCACAGCCCAATCGCGAACTTTCTACAAATTGTTTTTTTAACA
AAGCCTGCCACTGATGGAGACCCATATAATGCATGCGTAAGAAAGTGGCA
AGGGAAGGATTGTTGCATCCCGCTGCTGTTTTACAGATGCAAGTATTGCA
TGTAGAAATGTACCGTAATCCTACTGGCAATGTCGAACGTGGAGAAGGAG
AACGCCAGCCGGTTTTTCACCTTACAATTACTGCTATACCTATCTCCCAT
TTCAAAGCGCATCGCATGAGGGCAGCGACTATAATATTGAAAGTACACTC
GCGGAAAGTATTGTTGCCTCGCCCGCCAATTTTGCTACAGACGGTCGGCA
ACCTAGTCCTCTTCCGTCCACCAATCATACCCCACAGCTCTTGTTTGGGC
ATGTAGTCTACTACGTACACAGGCGACCGCAGTACCAGCAGCAACGGCGA
TCAAATGGTTTATGACGAAACAAGCACTCTCTCAATATCCTCTTGTGGTT
GGTTAGAGCTAAGGTATAGGCAATGCCACCCCCCCCCCCCCCCCTGGCCT
GTTGCGCCCGATTTTCACACACCTGTGTAAAACGCGTGTGCGTCCCAATC
TCCTTCATCTTACGCGCGCGGCAATGACTCGCCAAAATATATGCTGTACT
TGTATCCTAAAAAAAAAGTATCGATCGGCCTTGCTCTCTGCTCCAGGCTC
GGCTTTATGCGTCGCAAGTGTCGGCGAATGATGGCTTTTACCGCGGACCG
TCTATACATCGTTAAGGTAGACGATGGCAAGGCGAAGGCCAGCTACCCCC
TTAAGAGCGTGCAGCTTGCTCCCTCGGACAAGGTCAACCAGGCGAGTGTT
GCATGTATATATTTAAATAAAACTATACCGATAAGGACTTTTGATGGACA
GTGTCTGGCCGCATTGCATGTATGCCCGAGAGATCGCTATATTTGGGAGC
GTTGCTTTTTGGGACGAGTGGAGCCATGAAAGGTTGGAAGCAAACAGGTC
GGATGCTGTGATGGTGTGCCGTTACGATTCTGTAGGTTGTTTAGTGTCCA
GGGGAGGGGGGGGGGGGAGGGGTTGTGGCATCAATCAAACGGGGGAAATG
TTCTGTGATACCTATAATAGTACGTTCCTATTAGTAGTACACGTCCATCT
GAACCGGCCGCCCATCTGTGTCCTGCAAACGTGTGGACGCGCAGGGAAAG
GGCATAATCTTGACAAGCGACATCGGCAACGTGCGTCACCCGTACAAGTG
CCGTGACCGCACCAGCCTCTTGGCGGCGTTCGCCGAGCTCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8433:420..4962-

>mRNA_S-dermatodea_contig8433.16602.1 ID=mRNA_S-dermatodea_contig8433.16602.1|Name=mRNA_S-dermatodea_contig8433.16602.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at S-dermatodea_contig8433:420..4962- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCTATGTAAGATGAGCTATGTAAGGTCCAACAATCCTTTTGCATCA
AGCGAGGCACCCAGCTCCCGTACCTCAGCGCGCGCCATGCACCGAAAGTC
AGGTCCAACAATCCTTTTGCATCAAGCGAGGCACCCAGCTCCCGTACCTC
AGCGCGCGCCATGCACCGAAAGTCAGGAACGCCCAGCACTTCGACAGCGT
CGCACGCATCACCGACCCGCGCCTCGTCCGTGCCGTCGGCAATCGGGAGC
TTGGGCTTTGGGAGCAATGAAGTTGAATCTGATCAGGAACGCCCAGCACT
TCGACAGCGTCGCACGCATCACCGACCCGCGCCTCGTCCGTGCCGTCGGC
AATCGGGAGCTTGGGCTTTGGGAGCAATGAAGTTGAATCTGATCAGGACA
CGGAGACGGAGGGGGAGGTCAACACGGCTGAGCCTTGGAAACAGGCGATT
GGCGACCTGGTGGCGCCCCGCACTTTCGCTGCACGTTTCTTCGTTACCAG
GACACGGAGACGGAGGGGGAGGTCAACACGGCTGAGCCTTGGAAACAGGC
GATTGGCGACCTGGTGGCGCCCCGCACTTTCGCTGCACGTTTCTTCGTTA
CCAGGCTCGGCTTTATGCGTCGCAAGTGTCGGCGAATGATGGCTTTTACC
GCGGACCGTCTATACATCGTTAAGGTAGACGATGGCAAGGCGAAGGCCAG
CTACCCCCTTAAGAGCGTGCAGCTTGCTCCCTCGGACAAGGTCAACCAGG
CTCGGCTTTATGCGTCGCAAGTGTCGGCGAATGATGGCTTTTACCGCGGA
CCGTCTATACATCGTTAAGGTAGACGATGGCAAGGCGAAGGCCAGCTACC
CCCTTAAGAGCGTGCAGCTTGCTCCCTCGGACAAGGTCAACCAGGGAAAG
GGCATAATCTTGACAAGCGACATCGGCAACGTGCGTCACCCGTACAAGTG
CCGTGACCGCACCAGCCTCTTGGCGGCGTTCGCCGAGCTCCAGGGAAAGG
GCATAATCTTGACAAGCGACATCGGCAACGTGCGTCACCCGTACAAGTGC
CGTGACCGCACCAGCCTCTTGGCGGCGTTCGCCGAGCTCCAG
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