mRNA_S-dermatodea_contig8432.16601.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8432.16601.1
Unique NamemRNA_S-dermatodea_contig8432.16601.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8432.16601.1 vs. uniprot
Match: D8LBK3_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBK3_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 6.030e-41
Identity = 70/99 (70.71%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:   73 APV--RKVLERPAVRENVQFPNVVAYYEGAEDVPGDREKSILRVKNGQMVVVYKTDDPLWWLAKVGDEIGWIASHTLQEIDPQAPGRLQHQPAEDVNPR 363
            APV  RKVLERPA  +NV FPN V+Y+EGAED+PGD+EK +LR+K+GQMVVVYKTDDP WWL KVGD++GW+ SH LQE+DP+APGR QH P  D+NPR
Sbjct:  105 APVVPRKVLERPANGQNVAFPNKVSYFEGAEDLPGDKEKGMLRLKDGQMVVVYKTDDPHWWLGKVGDDVGWVPSHLLQEVDPKAPGRQQHVPPRDINPR 203
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8432.16601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK3_ECTSI6.030e-4170.71SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8432contigS-dermatodea_contig8432:3365..8793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-27_003640.1
Exons3
Model size365
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8432.16601.1prot_S-dermatodea_contig8432.16601.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8432 3365..8793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.700199-CDS-S-dermatodea_contig8432:3364..34741622925342.700199-CDS-S-dermatodea_contig8432:3364..3474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 3365..3474 +
1694079868.8487873-CDS-S-dermatodea_contig8432:3364..34741694079868.8487873-CDS-S-dermatodea_contig8432:3364..3474Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 3365..3474 +
1622925342.7141902-CDS-S-dermatodea_contig8432:6727..68751622925342.7141902-CDS-S-dermatodea_contig8432:6727..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 6728..6875 +
1694079868.8596492-CDS-S-dermatodea_contig8432:6727..68751694079868.8596492-CDS-S-dermatodea_contig8432:6727..6875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 6728..6875 +
1622925342.7245772-CDS-S-dermatodea_contig8432:8688..87931622925342.7245772-CDS-S-dermatodea_contig8432:8688..8793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 8689..8793 +
1694079868.8701744-CDS-S-dermatodea_contig8432:8688..87931694079868.8701744-CDS-S-dermatodea_contig8432:8688..8793Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8432 8689..8793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8432.16601.1

>prot_S-dermatodea_contig8432.16601.1 ID=prot_S-dermatodea_contig8432.16601.1|Name=mRNA_S-dermatodea_contig8432.16601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MSQLVGLPQAPGVVSSVGVAAQPPAPVRKVLERPAVRENVQFPNVVAYYE
GAEDVPGDREKSILRVKNGQMVVVYKTDDPLWWLAKVGDEIGWIASHTLQ
EIDPQAPGRLQHQPAEDVNPR
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mRNA from alignment at S-dermatodea_contig8432:3365..8793+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8432.16601.1 ID=mRNA_S-dermatodea_contig8432.16601.1|Name=mRNA_S-dermatodea_contig8432.16601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5429bp|location=Sequence derived from alignment at S-dermatodea_contig8432:3365..8793+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCAGCTGGTTGGGCTGCCGCAGGCTCCGGGAGTGGTTTCATCGGT
CGGCGTGGCTGCTCAGCCGCCGGCTCCCGTGCGGAAAGTGCTGGAAAGGC
CAGCTGTTCGGTGAGAATACGGGGGGAGGGGTGCAGGGTATATTGTTTGT
GCGTGCGTTGTGCGCGCGTCTTATGATAGAAGCAGCGGTCCTCCCAAGAT
GGAACATTGAATGACTGCTGTCCCCTGCCTGCTGGTGCGAAGAGGATGCC
GGGTAGAGACAAGAGAAAGAAGCTTGTTGCGTCGAGAGAACCGACGCGGT
CGAATGGGCCTGCGCGTTGTGCGTTGCGTCGTGGTGGGGGAATAGCGGAA
TATACGCAGGGTCTGGTGTGTTTAAACGCTTTGGCCTACTTTGCTGTGCC
ACAGTAGCCTACATGCGTATGATACCCCTCTCATGACCGGCGCCTGTGCG
TGATGCCAGAAACGCCCAAGCCTGGATGGAAGCCAGAAAAGCCGCACGTA
ATGTTTTATCTGTACGTATCATACGAGTAGAGCGCCTGGACACTGCCCGG
GTGCTCGGCCTGATTTCGGCTTGGAGAGCAGAGAGGGGTCGAGTTTGTTT
TTATCTCTGCACGGCCTGGCCTTCGCCCCGTCTATTTTGGTGTACTGCTG
TATTTCTTTTATACTACAGTACCCTGCTGTAATATACACATGATAGACTT
GCTTTTCCGAGGTCCGTCTGTGGTCACAAGGGATCATCCCATCTCTCTTT
TCCCCCGTGCTCCCCTTCGATTTTTATCGCGAATGCGAATGCATTGGGTT
CGGCACTCCCACAGCTCGCCGACTTCTCGGATTTTGCTTGCTCACGCTCT
CGCGCTTTCCGCGGCGGAGGTAGAGAAAATGTATAAATAATATCGACTCT
GCCGGGATTTGAACCCGGGTCCTCCGCCTACTGGGCTGTTGGTCAACCAG
TTTAACCACGGGGCGCGCGGTTAGTGTACCGCACTACAGTATACTATCAT
ACTGCTGTAGTATAATATAGAAGGGACATGATCGTTGGCGAAAAATGCTT
GGCGGCATGATTATAACATTATAACTGAATACGCGCTATTGTGCAATCGC
ATTGAAACGGGCAACAAACTCCAGAACCACCGACCGGGAAATTATTTACC
ACGCAATGTATCAACAACGAACTGTCCGTGCTTCCTCGCTCGTCGTGGCT
CGTGGCGGCCTGGCCTGGGAGACGGGACTGGTCGCTTGGACGCAGAAGCG
CTTGTGGTGCTGCCGCGCTTCTGCGCTCAGCACATCCGCAGCACCACGGT
TCGCATGATAAATCCATTACAGCTAACGGTATGATACAGACAGAGTAATA
CCTGACGAGGGAACAAAGAATGCTCGCCACTACTGCTGTCGCTCTTTTAG
TTAGGTCTTCCCCGTGCTCCAATGCACGCGGTCTTTCGCGATATATCAAC
ACGCAGTTGTTGTAGTGTGGGAGGCATGACATTATTGTGGTATTAATAGC
AATCTGTCTTGATTGTGGCTGGGGCACAATGTGATTCTGCCCAGATGCCT
AACCGGCCAATGGAATGGATGCGTGTGCATAGAAGCAGCAGACCGGCTGG
TTCGAGGAGCGGAGGGGACTGGCCTTGCTCTTTGGAAAAATACCCTTATA
CTTGTACTGTAGAGGGTCTTTTTCCAAAGGGCTGGCTCCTGGAGCAGCAG
ATGGTCTGGCTCCAAAGAACCCCCCTTTCCCCTTCCATGCTTCCCCCGTA
AGGGGGTAGGATCAAGAAAACTCGAAAGTAAAGGACAGCAGTATAAAACC
AGACAACTGGCTATTAACAGTAAAAAGCAGCAGACTGGCTGGTTCCAGGA
GTAGCAGATGGGCTGGCTACAATGAGTCCCCTTTTCCCTTCCCCCGTATG
GGTAGCAGGATCAGTAAGACTCGAAAGTGTATAGAGGACAGACAGTAGTA
TATTTACGCATGGTATTGTACAAGACAACTATTATAGTCTATATTAATCC
GGGGCGAGAAAAAAAGTGACACCTTGTACGACCATCTTGTTGGTACAGTA
TAGTATAATATACTGTACTTGCATACGCGTATCATATGAAAAAATCCCGA
GGGTGAAATAACTGGGTCGTCCCTCTGGCCATCCCTCCGTGCGAGATTTA
CTTTTTTCCCCCTCACGGCCGAACAGGTCATCGCTCGCGATTCGCTGACG
CCCCAATTTGTTGTCTTATGTTCTCTACCTGAGCGTATGTACTTGTAGCA
AAATGCAAAATCTGAGTGGTATGAGCTGCTGGAGTGCTGATCGACCCCAG
TGCAAAACAGATTATCCCTTGGGGTGTATCACTTGTACCAGTACACAGAG
TACCATATACGTACGTAGTTAACGTAAATGACAAATCTCGATCCGTTTCC
CGGATCATCTGCCCGCACCTTATTTAGAGTATGTCACATAAAAAAATACT
CCTATTAATACTACAGCAGTACCACAGAGCTCTATAAAAATAACTCACCT
GGGACCTGGGACACGTAATTACTGCCGGCGGAAGAGTGATAATACCCTGC
TGTCTGTCGCGGTTAGCTTGGAATCACGTTGCATCTCTTCGTGCACCCGT
CGCCATTGTCATTCTCGGCTCTCGGCGCTAAAACAGACCCAGGTCCAAAA
GGATCCTTGTTGATTCAAGGAATAGCGCTTTGACCTATTTTTAATATTAA
TATCATATCGATTTTAGACAACGATATTTTGTCACCGGGATCCTACAGGA
AAAAGTGATGCCAAACAACTTGATGTTTGTGTTGAGCGCCAAGTGTTGAA
AATAGTACCTAGGTTTTTCACCTCACGGGCGTAGCCGTGGCCACCCACCA
GTTAAAACCTATACAAGTAGCGTCTTCCTATGCTACCGGGGAGAAACACG
TTGACTCCTCGTTACCGTTTTCACGATGTTCGGATAAGGCCCATAATATC
ATAACGATATCTGTCGTACTCTGTCTACCATACAATTCATCAGTCATGCA
TGTATAGATACTAGATATCACGTCATCCTTTGAAAATTATTTCTGGCGCT
CTCATCTACAAGTACTCTGTATCAACCTTGGCCTACGTATACAGAGTACT
CTGTATATCTCCCGCGACGCTACTGTTCTCAAGCGGTTGGAGCCGTGCGC
TGGTGTTTTGTTTTGTTTTTTAGCTTTTATTTTGTTGCCTTGTCTTGTGT
GTTGTATGATGTCATATCATACGCAACTTCTTATTCTGTTGTACCTGTAT
CATACATACCATGCCCTTTACATCTCTTAACTCACTTGTAATATAATGAT
GATATCATATGGTATGAAAGCTAAATGTTGTGTATCCCCCCGAATCCTCG
GCGATGTCGACAGGGAGAACGTGCAGTTTCCCAACGTCGTGGCGTACTAC
GAAGGCGCCGAGGACGTGCCCGGGGACCGAGAGAAGAGCATACTCAGGGT
CAAGAACGGTCAGATGGTGGTGGTCTATAAGACCGACGACCCGCTCTGGT
GGCTCGCGAAGGTGCGTCCGCCGTGCTTCTGTGGGGACCATTAATATTCA
GCACCTCCATGGTACGTATATAGGATATTGCTCTAGAGATATACTTTTTG
CTACAAGTACAGCAGTCTAGTAGTGGGTAGCCACGGCTACGCCCGTGAGG
TGTGCGTCGGCAGGCGGTATATATGTGGGTTTGGAAAATCAGGCCACTAC
TCCTGAAAAGGACTACTCTAAAACCCTATTATCAAGAGTGTATAGGTATT
AGAGACTAAACTATTCTCCATATATCGGGCGTTAAATTTTGGCATCAAGG
CTCCACTCTAAATTCTAAACAAACAAACTTGCAGAGCGCTATTCATGAAT
CAAGATAGTACAAGCAGTAGCAAGTGTTGCTGCTTTCATGGTACACCTCT
GCTGTGACGAGCGTTGCTCGTATATTTTATGGATGTAGGTGCTGAAGCCA
TAGAGCTAGAGTTAGAAGTAGTGCATCATGGCAGCAACATATGTTTGCAT
CTGCACTCAGGTGTAGCTCTAGAGCCTTTGTATGTAGGGTGTGCAGTGTG
AGCCGTTCTCAGTATATACTGTATCTTATTCATGAATACCGCTTTGATCG
TTTTTCCTAAACTATGTCCAAGTACGATTTTTAGGCCGATTTTCCATACC
ATTTCCTATACTTCGAAGTACGATTTTTAGGCCAAGTGTTGAAAAGAGTG
GTAGGAGTTTTCACCTCAGCGGCGTAGCCGTGGCTACCTACGTACTAGTT
ATACTGTACCAGTGGTACATAATATCCTTCTTTCTGCGCATGCATTCTGC
CGCCACCACGGTGTTAAGGGTGTAGGGAGGAGAACAATTTCGCACATTTA
ACCGATAACGTCAATTTGTACAAGTAGCTATAACAGCTGTGTGTACGAGT
ATCATACTTCGAAGTATGATATGATGATATGATGATATGATTATAGTACT
GCTGTACCAGTACATGTATGATAAATTATAGATTATTCGTTTCACCCGGC
GGAATGGGGAGGTCGTATATTACTGCAGGGCTGCAGCCACGCATGGGCTT
CATTCAGTCTGCTGTCGGTTGGTCTGGCGTGATACGCAGGTTGTCAACCC
CTTTCCGGATACTGCTGCTGTACTGCTGTAGATCTAATTTTATATTGTAG
TATTATACAATGTGGCAGCCACGGCTACGCCCGTGCAGCGTGTGAGGTGT
GCGTTGGCAGCTTTGGAAAAATACCCTATTAACATCTGTGTATGTCTTTC
AAAACTGGCGCACTAAAATAAGCATACAAAATCGTATAGGAGTTTAGTAT
ACGAAATCGGCCTCATCGCGCCCTAAAAAAATCGTGCTACAGAATCGTTC
TTTAAATCGCTATTGAAAATGGTTCCTTGTTGTAAAATTAATAGTTGTAT
AAACTAATAGGTAGCCACGGCTACGCCCGTGAGGTGTGCATCGGCAGGAC
GATACTTACAGCTCTGCAGCAAAGGTGAGTGGGTGCAGAGGAGTGAGTGT
GCGTGCGAATATAAATATATCTACACTGCTGTACACACTCCGTACGTGTT
CTTATAACCTATCAAGTCAAGTATGAACTCATATACTTTCGACATTATTT
ATATACGTGTCACGTTTTCCACCGCCATATTTTATATTTGAATGATTCCT
TTTGGAAGGAAGCATATTCTCGCGCCTTGGATACCGAACCTCGACGTCGA
ACAGGTTACCCCCGATTGCCTTGAGCCGAGTCGAGCGGCGAAGCCCTTGT
ATATATATATATATACATACCCTGGCTTGACACAAACGCCGCAATACACA
ACGGTGGCTAAAACCGCCGCACAGGTCGGCGACGAGATCGGCTGGATCGC
GTCTCACACCCTGCAGGAGATCGACCCCCAAGCGCCGGGCAGGCTGCAGC
ACCAGCCGGCCGAGGATGTAAACCCGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8432:3365..8793+

>mRNA_S-dermatodea_contig8432.16601.1 ID=mRNA_S-dermatodea_contig8432.16601.1|Name=mRNA_S-dermatodea_contig8432.16601.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig8432:3365..8793+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCTCAGCTGGTTGGGCTGCCGCAGGCTCCGGGAGTGGTTTCATCGGT
CGGCGTGGCTGCTCAGCCGCCGGCTCCCGTGCGGAAAGTGCTGGAAAGGC
CAGCTGTTCGATGTCTCAGCTGGTTGGGCTGCCGCAGGCTCCGGGAGTGG
TTTCATCGGTCGGCGTGGCTGCTCAGCCGCCGGCTCCCGTGCGGAAAGTG
CTGGAAAGGCCAGCTGTTCGGGAGAACGTGCAGTTTCCCAACGTCGTGGC
GTACTACGAAGGCGCCGAGGACGTGCCCGGGGACCGAGAGAAGAGCATAC
TCAGGGTCAAGAACGGTCAGATGGTGGTGGTCTATAAGACCGACGACCCG
CTCTGGTGGCTCGCGAAGGGAGAACGTGCAGTTTCCCAACGTCGTGGCGT
ACTACGAAGGCGCCGAGGACGTGCCCGGGGACCGAGAGAAGAGCATACTC
AGGGTCAAGAACGGTCAGATGGTGGTGGTCTATAAGACCGACGACCCGCT
CTGGTGGCTCGCGAAGGTCGGCGACGAGATCGGCTGGATCGCGTCTCACA
CCCTGCAGGAGATCGACCCCCAAGCGCCGGGCAGGCTGCAGCACCAGCCG
GCCGAGGATGTAAACCCGCGGGTCGGCGACGAGATCGGCTGGATCGCGTC
TCACACCCTGCAGGAGATCGACCCCCAAGCGCCGGGCAGGCTGCAGCACC
AGCCGGCCGAGGATGTAAACCCGCGG
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