mRNA_S-dermatodea_contig84316.16600.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84316.16600.1
Unique NamemRNA_S-dermatodea_contig84316.16600.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84316.16600.1 vs. uniprot
Match: D8LC50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC50_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 2.240e-11
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DELSALQTTLIIPRARRSAAIASQRRTASEIGKLVGKAFDDEDD--SDEDADLGGSFATPAAGLAEGESDEEAELDF 225
            DELSAL+  +I PRARR AAIASQRRTASEIGK VG A D++D   SDED +L                 EEAEL+F
Sbjct:   73 DELSALKGNIIYPRARRKAAIASQRRTASEIGKFVGGAADEDDXXXSDEDGELXXXXXXXXXXXXXXXXXEEAELEF 149
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BLAST of mRNA_S-dermatodea_contig84316.16600.1 vs. uniprot
Match: A0A6H5J8X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8X7_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.480e-11
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 DELSALQTTLIIPRARRSAAIASQRRTASEIGKLVGKAFDDEDD--SDEDADLGGSFATPAAGLAEGESDEEAELDF 225
            DELSAL+  +I PRARR AAIASQRRTASEIGK VG A DD+    SDED +LGG                EAEL+F
Sbjct:  165 DELSALKGNVIYPRARRKAAIASQRRTASEIGKFVGGAADDDXXXXSDEDGELGGXXXXXXXXXXXXXXXXEAELEF 241
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84316.16600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC50_ECTSI2.240e-1155.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8X7_9PHAE2.480e-1157.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84316contigS-dermatodea_contig84316:362..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004470.1
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.666091-CDS-S-dermatodea_contig84316:361..5891622925342.666091-CDS-S-dermatodea_contig84316:361..589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84316 362..589 -
1694079868.8374135-CDS-S-dermatodea_contig84316:361..5891694079868.8374135-CDS-S-dermatodea_contig84316:361..589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84316 362..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84316.16600.1prot_S-dermatodea_contig84316.16600.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84316 362..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84316.16600.1

>prot_S-dermatodea_contig84316.16600.1 ID=prot_S-dermatodea_contig84316.16600.1|Name=mRNA_S-dermatodea_contig84316.16600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=76bp
DELSALQTTLIIPRARRSAAIASQRRTASEIGKLVGKAFDDEDDSDEDAD
LGGSFATPAAGLAEGESDEEAELDF*
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mRNA from alignment at S-dermatodea_contig84316:362..589-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84316.16600.1 ID=mRNA_S-dermatodea_contig84316.16600.1|Name=mRNA_S-dermatodea_contig84316.16600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig84316:362..589- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGAGCTGTCTGCACTACAAACGACCCTCATCATCCCGCGCGCTCGGCG
CAGCGCGGCGATCGCCTCCCAGCGCCGCACGGCCTCCGAGATCGGCAAGC
TCGTGGGCAAGGCATTCGATGATGAGGACGACTCCGACGAGGACGCGGAT
CTGGGCGGAAGCTTCGCCACCCCGGCTGCTGGGCTAGCCGAAGGAGAGAG
CGACGAGGAAGCAGAGCTGGATTTCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig84316:362..589-

>mRNA_S-dermatodea_contig84316.16600.1 ID=mRNA_S-dermatodea_contig84316.16600.1|Name=mRNA_S-dermatodea_contig84316.16600.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig84316:362..589- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGAGCTGTCTGCACTACAAACGACCCTCATCATCCCGCGCGCTCGGCG
CAGCGCGGCGATCGCCTCCCAGCGCCGCACGGCCTCCGAGATCGGCAAGC
TCGTGGGCAAGGCATTCGATGATGAGGACGACTCCGACGAGGACGCGGAT
CTGGGCGGAAGCTTCGCCACCCCGGCTGCTGGGCTAGCCGAAGGAGAGAG
CGACGAGGAAGCAGAGCTGGATTTCTAAGACGAGCTGTCTGCACTACAAA
CGACCCTCATCATCCCGCGCGCTCGGCGCAGCGCGGCGATCGCCTCCCAG
CGCCGCACGGCCTCCGAGATCGGCAAGCTCGTGGGCAAGGCATTCGATGA
TGAGGACGACTCCGACGAGGACGCGGATCTGGGCGGAAGCTTCGCCACCC
CGGCTGCTGGGCTAGCCGAAGGAGAGAGCGACGAGGAAGCAGAGCTGGAT
TTCTAA
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