mRNA_S-dermatodea_contig84302.16599.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84302.16599.1
Unique NamemRNA_S-dermatodea_contig84302.16599.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84302.16599.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.100e-11
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:   31 ERRKIRNRMSAQQHRERQRQRVDTLEDCLRQREGEIANLKEQ 156
            ERRKIRNRMSAQQHRERQRQRVDTLEDCLR R+ EIA L++Q
Sbjct:  232 ERRKIRNRMSAQQHRERQRQRVDTLEDCLRLRDNEIAKLEKQ 273
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BLAST of mRNA_S-dermatodea_contig84302.16599.1 vs. uniprot
Match: D7FWU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU5_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-7
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   55 MSAQQHRERQRQRVDTLEDCLRQREGEIANLKEQ 156
            MSAQQHRERQRQRVDTLEDCLR R+ EIA L++Q
Sbjct:    1 MSAQQHRERQRQRVDTLEDCLRLRDNEIARLEKQ 34
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84302.16599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBR4_9PHAE4.100e-1185.71Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU5_ECTSI4.860e-782.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84302contigS-dermatodea_contig84302:37..192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.6340828-CDS-S-dermatodea_contig84302:36..1921622925342.6340828-CDS-S-dermatodea_contig84302:36..192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84302 37..192 -
1694079868.826731-CDS-S-dermatodea_contig84302:36..1921694079868.826731-CDS-S-dermatodea_contig84302:36..192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84302 37..192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84302.16599.1prot_S-dermatodea_contig84302.16599.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84302 37..192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84302.16599.1

>prot_S-dermatodea_contig84302.16599.1 ID=prot_S-dermatodea_contig84302.16599.1|Name=mRNA_S-dermatodea_contig84302.16599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
MNQPIKSTKQERRKIRNRMSAQQHRERQRQRVDTLEDCLRQREGEIANLK
EQ
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mRNA from alignment at S-dermatodea_contig84302:37..192-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84302.16599.1 ID=mRNA_S-dermatodea_contig84302.16599.1|Name=mRNA_S-dermatodea_contig84302.16599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig84302:37..192- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATCAACCAATCAAATCAACGAAACAGGAGCGAAGAAAAATCCGGAA
CCGGATGAGCGCCCAGCAGCACCGCGAGAGGCAGCGGCAGCGCGTGGACA
CGCTGGAGGACTGCTTGCGGCAACGAGAAGGAGAAATCGCGAATCTCAAG
GAACAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84302:37..192-

>mRNA_S-dermatodea_contig84302.16599.1 ID=mRNA_S-dermatodea_contig84302.16599.1|Name=mRNA_S-dermatodea_contig84302.16599.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig84302:37..192- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATCAACCAATCAAATCAACGAAACAGGAGCGAAGAAAAATCCGGAA
CCGGATGAGCGCCCAGCAGCACCGCGAGAGGCAGCGGCAGCGCGTGGACA
CGCTGGAGGACTGCTTGCGGCAACGAGAAGGAGAAATCGCGAATCTCAAG
GAACAGATGAATCAACCAATCAAATCAACGAAACAGGAGCGAAGAAAAAT
CCGGAACCGGATGAGCGCCCAGCAGCACCGCGAGAGGCAGCGGCAGCGCG
TGGACACGCTGGAGGACTGCTTGCGGCAACGAGAAGGAGAAATCGCGAAT
CTCAAGGAACAG
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