mRNA_S-dermatodea_contig843.16598.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig843.16598.1
Unique NamemRNA_S-dermatodea_contig843.16598.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: D7FUV7_ECTSI (Mevalonate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV7_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 8.700e-53
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            S S+LE INAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGA N TEPIPGFPPLPI+LTNTLVPK+T ALVAGVRRLLEAH   TTATFDAIGAIA EF
Sbjct:  276 SGSELERINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAANTTEPIPGFPPLPILLTNTLVPKNTGALVAGVRRLLEAHRPATTATFDAIGAIAAEF 379
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A7S4B5A5_CHRCT (Mevalonate kinase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5A5_CHRCT)

HSP 1 Score: 108 bits (271), Expect = 9.020e-26
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            SP+  ++INAWA++ E +LHGTPSGLDN+VSCYG A+K ++       + EP+  FP L ++LTNT VP+ TR  V+GVRRL E+ P+ T   F+AI ++A  F
Sbjct:  222 SPTAKQLINAWAYSSECILHGTPSGLDNSVSCYGEAVKLMRAAPAEALLFEPVKRFPKLQVLLTNTKVPRKTREQVSGVRRLHESLPSVTIPVFEAISSVADAF 325
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A1V9ZWT1_9STRA (Mevalonate kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWT1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 9.500e-23
Identity = 52/104 (50.00%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            S  DLEV+N +AFA E +LHG PSG+DN+V+ +GGAI F +G++    + + +   PPL I+LTNT VP++T+ LVAGVR+L +A+P+   A FD I  +AG F
Sbjct:  173 STVDLEVVNNYAFAAEVLLHGNPSGVDNSVATFGGAIVFKRGLE---TIMKKLV-IPPLRILLTNTHVPRETKVLVAGVRQLYDANPSAIQALFDTIEGLAGSF 272
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A120K0R0_9SACH (Mevalonate kinase n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A120K0R0_9SACH)

HSP 1 Score: 99.0 bits (245), Expect = 2.970e-22
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIA 303
            S SDLE +N W+F  E   HGTPSG+DN V+ YG A+ F +  DG+    EPI  FP +P++LTNT +PK T+ LVA VR+L E  P  T+   +A+ A+A
Sbjct:  176 SSSDLEFVNKWSFIAEKCNHGTPSGIDNAVATYGNAVVFRRQEDGS-TTFEPIKEFPQVPMVLTNTKIPKSTKVLVANVRKLFEREPVITSTILEAMSAVA 275
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A7S2NSF0_9STRA (Mevalonate kinase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSF0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.400e-22
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    7 SDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVT---EPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            + L++INAWAFA E V+HG PSGLDNTVSCYGGA+ + K  +  GN+    E +   PPL +ILTNT +P+ T+ALVAGV ++ E     T   F AIG I+ +F
Sbjct:   70 ASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQKDAE-TGNLRAFHELV--VPPLDMILTNTFIPRSTKALVAGVHKVKEDFEF-TVDVFAAIGRISDQF 170
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A7S3WRS7_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WRS7_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 7.620e-22
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKG--MDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            S +  E+IN WA+  E +LHGTPSGLDN VSC GG ++  +     GA    EPI    P+ +++TNT VP+ TR LVA VR L +A PA T A F A+ ++A  F
Sbjct:   17 SSAARELINGWAYCAECILHGTPSGLDNAVSCEGGGMRLQRAGRESGAALRFEPIASLRPMTVLVTNTNVPRSTRRLVAKVRALRDAQPALTEALFGAVASVAEAF 122
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A7S2NTU7_9STRA (Mevalonate kinase n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTU7_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.880e-21
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1 
Query:    7 SDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVT---EPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            + L++INAWAFA E V+HG PSGLDNTVSCYGGA+ + K  +  GN+    E +   PPL +ILTNT +P+ T+ALVAGV ++ E     T   F AIG I+ +F
Sbjct:   70 ASLDIINAWAFASEGVIHGNPSGLDNTVSCYGGAVYYQKDAE-TGNLRAFHELV--VPPLDMILTNTFIPRSTKALVAGVHKVKEDFEF-TVDVFAAIGRISDQF 170
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A1E4TM26_9ASCO (Mevalonate kinase n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TM26_9ASCO)

HSP 1 Score: 95.9 bits (237), Expect = 3.870e-21
Identity = 48/99 (48.48%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:   13 LEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGE 309
            L++IN +AF GE  +HG+PSG+DNTV+ YGGA+KF +   G  +  E IP FPPL +ILT+T +PK T  LVAGV  L+   P    +  +AIG ++ E
Sbjct:  175 LKLINKYAFLGEIAIHGSPSGIDNTVATYGGAVKFQRVKSGTSSY-EQIPNFPPLRLILTDTRIPKSTATLVAGVHTLIRDMPVMGNSLIEAIGRVSSE 272
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: J3PIT2_GAET3 (Mevalonate kinase n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3PIT2_GAET3)

HSP 1 Score: 94.7 bits (234), Expect = 1.390e-20
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 1 
Query:   13 LEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGE 309
            +E IN+WA+AGE  +HG PSG+DNTVSC G A+ F+K  DG  +   P+ GFP L ++L +T  P+ T A V  VR L  +HPA      DAIGA+  E
Sbjct:  209 IERINSWAYAGELCIHGDPSGVDNTVSCRGKAVLFLKSPDGGPSSVTPLVGFPRLRLLLVDTKQPRTTAAQVEKVRALRASHPATVGLILDAIGALTEE 307
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BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Match: A0A7S1XV97_9STRA (Mevalonate kinase (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XV97_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.620e-20
Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVTEPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAIAGEF 312
            +P+    IN WAFA ETV+HGTPSGLDN+VSCYGGA+++VK          PI   P L I++ NTLVP+ TRALVA V   L+         F +IG IA  F
Sbjct:  200 APAQQREINGWAFAAETVIHGTPSGLDNSVSCYGGAMRYVK----TPFSMTPINPVPTLRILVVNTLVPRSTRALVAHVGDTLKRMEGAVRPIFHSIGYIADAF 299
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig843.16598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV7_ECTSI8.700e-5388.46Mevalonate kinase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S4B5A5_CHRCT9.020e-2650.00Mevalonate kinase n=1 Tax=Chrysotila carterae TaxI... [more]
A0A1V9ZWT1_9STRA9.500e-2350.00Mevalonate kinase n=1 Tax=Thraustotheca clavata Ta... [more]
A0A120K0R0_9SACH2.970e-2248.51Mevalonate kinase n=1 Tax=Eremothecium sinecaudum ... [more]
A0A7S2NSF0_9STRA3.400e-2251.43Mevalonate kinase (Fragment) n=1 Tax=Leptocylindru... [more]
A0A7S3WRS7_EMIHU7.620e-2247.17Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2NTU7_9STRA2.880e-2151.43Mevalonate kinase n=2 Tax=Leptocylindrus danicus T... [more]
A0A1E4TM26_9ASCO3.870e-2148.48Mevalonate kinase n=1 Tax=Tortispora caseinolytica... [more]
J3PIT2_GAET31.390e-2048.48Mevalonate kinase n=1 Tax=Gaeumannomyces tritici (... [more]
A0A7S1XV97_9STRA1.620e-2050.00Mevalonate kinase (Fragment) n=2 Tax=Phaeomonas pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig843contigS-dermatodea_contig843:22911..23874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.3
Seed ortholog evalue5.6e-44
Seed eggNOG ortholog2880.D7FUV7
Preferred nameMK
KEGG rclassRC00002,RC00017
KEGG koko:K00869
KEGG ReactionR02245
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146
KEGG ModuleM00095
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004496,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0016125,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019287,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0046872,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901615
EggNOG free text desc.mevalonate kinase activity
EggNOG OGsCOG1577@1,KOG1511@2759
EC2.7.1.36
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMevalonate kinase
Ec32 orthologEc-26_004370.1
Exons2
Model size315
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.5794976-CDS-S-dermatodea_contig843:22911..230701622925342.5794976-CDS-S-dermatodea_contig843:22911..23070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 22912..23070 -
1694079868.796405-CDS-S-dermatodea_contig843:22911..230701694079868.796405-CDS-S-dermatodea_contig843:22911..23070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 22912..23070 -
1622925342.5913184-CDS-S-dermatodea_contig843:23721..238741622925342.5913184-CDS-S-dermatodea_contig843:23721..23874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 23722..23874 -
1694079868.8154624-CDS-S-dermatodea_contig843:23721..238741694079868.8154624-CDS-S-dermatodea_contig843:23721..23874Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 23722..23874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig843.16598.1prot_S-dermatodea_contig843.16598.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig843 22912..23874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig843.16598.1

>prot_S-dermatodea_contig843.16598.1 ID=prot_S-dermatodea_contig843.16598.1|Name=mRNA_S-dermatodea_contig843.16598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
SPSDLEVINAWAFAGETVLHGTPSGLDNTVSCYGGAIKFVKGMDGAGNVT
EPIPGFPPLPIILTNTLVPKDTRALVAGVRRLLEAHPAPTTATFDAIGAI
AGEF
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mRNA from alignment at S-dermatodea_contig843:22911..23874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig843.16598.1 ID=mRNA_S-dermatodea_contig843.16598.1|Name=mRNA_S-dermatodea_contig843.16598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=964bp|location=Sequence derived from alignment at S-dermatodea_contig843:22911..23874- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCCGTCGGATCTGGAGGTGATCAACGCGTGGGCGTTCGCCGGGGAGAC
GGTGCTGCACGGAACGCCATCGGGGCTAGACAACACGGTTAGCTGTTACG
GGGGAGCGATCAAGTTTGTGAAGGGGATGGACGGCGCTGGGAATGTCACG
GAGGTGGGGACGGAGAGGTCGAGGGGGGCGGGGGGGGGCGGGGTACTCAT
GTTTTGCATGCCTTAGGTGTTAGACCATTGACCACGCGTCCTCGAGAGGG
CGAAGCAATGTCCCCACAGCATCGATCGCCGATGGCCAATCGTTCGTTCC
TACTCTGCCAAAGGTGGCGCAAAAATGGTTTTACTATCCGGTCTGCATCA
CTTCTCGCCTTGTCAGGGGCCACTTCTTATCCCCCAGTATAGCTACCGCC
TGGGGGTGCAAATTTCTTGCCCAGAAAGGAAGGGTGGCTGTGTGATACCG
CGGGTCACTTTTTTAAGTATGACAATTTTTTGTTTTTTTGGGAGGGTCAC
AACAGGTTTTGTACAGTGCTGGTTTTTGCGTAATTTAAGAGTTATCTCAT
TCGGCGTATACTGTACATACTAACACATTTGTTTGTTTCGTTTAGGGTGA
ACATGACTGACTTTTTCTTGAACTTGTGTGGCCGCCCAAAAAAACGCACC
AGTTTTTTTTAGTATTGTACATAGCATTAAGGGATCCCATCCCGGCGTGC
AATACCATGGCGACACTTATCATATGCCCCCGCCCCCTCTCCTCCCACCC
CCCGCCCCACCCTCCCCACCCATCCGCCGCGCGCGCTCCATCCTTTCCTC
CCAGCCTATCCCCGGGTTCCCACCTCTGCCGATTATCTTAACCAACACGC
TAGTACCCAAGGATACCCGAGCCCTAGTCGCCGGCGTGCGTCGCTTGCTC
GAGGCCCATCCAGCGCCGACGACGGCCACCTTCGATGCCATCGGGGCCAT
CGCCGGCGAGTTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig843:22911..23874-

>mRNA_S-dermatodea_contig843.16598.1 ID=mRNA_S-dermatodea_contig843.16598.1|Name=mRNA_S-dermatodea_contig843.16598.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig843:22911..23874- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGCCGTCGGATCTGGAGGTGATCAACGCGTGGGCGTTCGCCGGGGAGAC
GGTGCTGCACGGAACGCCATCGGGGCTAGACAACACGGTTAGCTGTTACG
GGGGAGCGATCAAGTTTGTGAAGGGGATGGACGGCGCTGGGAATGTCACG
GAGTCGCCGTCGGATCTGGAGGTGATCAACGCGTGGGCGTTCGCCGGGGA
GACGGTGCTGCACGGAACGCCATCGGGGCTAGACAACACGGTTAGCTGTT
ACGGGGGAGCGATCAAGTTTGTGAAGGGGATGGACGGCGCTGGGAATGTC
ACGGAGCCTATCCCCGGGTTCCCACCTCTGCCGATTATCTTAACCAACAC
GCTAGTACCCAAGGATACCCGAGCCCTAGTCGCCGGCGTGCGTCGCTTGC
TCGAGGCCCATCCAGCGCCGACGACGGCCACCTTCGATGCCATCGGGGCC
ATCGCCGGCGAGTTCCCTATCCCCGGGTTCCCACCTCTGCCGATTATCTT
AACCAACACGCTAGTACCCAAGGATACCCGAGCCCTAGTCGCCGGCGTGC
GTCGCTTGCTCGAGGCCCATCCAGCGCCGACGACGGCCACCTTCGATGCC
ATCGGGGCCATCGCCGGCGAGTTC
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