mRNA_S-dermatodea_contig843.16597.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig843.16597.1
Unique NamemRNA_S-dermatodea_contig843.16597.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: D7FUV7_ECTSI (Mevalonate kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUV7_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.030e-24
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKSLSKESLVRDMASEGFRCYESSLGGDGVLWHENGVPP 219
            PALERVCEVA  HGC+SKLTGAGGGGCA+TIL S + L K SLV  M  EGF+CYE+S+GGDGVL+H + VPP
Sbjct:  436 PALERVCEVASAHGCRSKLTGAGGGGCAVTIL-SGEDLCKASLVEAMLGEGFKCYETSIGGDGVLFHGDAVPP 507
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7K9D870_9AVES (Mevalonate kinase (Fragment) n=1 Tax=Hemiprocne comata TaxID=243314 RepID=A0A7K9D870_9AVES)

HSP 1 Score: 77.0 bits (188), Expect = 1.830e-14
Identity = 41/79 (51.90%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHENGVPPELASA 234
            P+L+R+C+V   HG  SKLTGAGGGGC +T+L  D S L+ E+  RD+++ GF C+E+SLGG GV  H    P  LA+A
Sbjct:  197 PSLDRLCQVTMSHGLHSKLTGAGGGGCGITLLRPDTSPLAVEAAKRDLSACGFECWETSLGGPGVTLHS---PCSLAAA 272
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7S4B5A5_CHRCT (Mevalonate kinase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B5A5_CHRCT)

HSP 1 Score: 78.2 bits (191), Expect = 1.930e-14
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKSL--SKESLV----RDMASEGFRCYESSLGGDGVLWHE 204
            PAL+ VC+VAG HG  +KLTGAGGGGCA +IL  ++ L  S E+ V    R + S  F CY +++GG+GVLWHE
Sbjct:  361 PALQLVCDVAGKHGLPTKLTGAGGGGCAFSILGGEEELDSSMETRVQRCSRTLRSHRFDCYRTTVGGEGVLWHE 434
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A8C0FIZ2_BUBBB (GHMP_kinases_C domain-containing protein n=2 Tax=Strigidae TaxID=30459 RepID=A0A8C0FIZ2_BUBBB)

HSP 1 Score: 72.8 bits (177), Expect = 3.670e-14
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHEN 207
            P+L+R+C V   HG  SKLTGAGGGGC +T+L  D S L+ E+  RD+ + GF C+E+++G  GV  H +
Sbjct:   33 PSLDRLCRVTASHGLHSKLTGAGGGGCGITLLRPDTSPLAVEAAKRDLCACGFECWETNIGAPGVTLHSS 102
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7L4HAH5_PODST (Mevalonate kinase (Fragment) n=1 Tax=Podargus strigoides TaxID=8905 RepID=A0A7L4HAH5_PODST)

HSP 1 Score: 75.9 bits (185), Expect = 4.710e-14
Identity = 35/70 (50.00%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHEN 207
            P+L+R+C+V   HG  SKLTGAGGGGC +T+L  D S L+ E+  RD+ + GF+C+E+++GG GV  H +
Sbjct:  193 PSLDRLCQVTASHGLHSKLTGAGGGGCGVTLLRPDTSPLAVEAAKRDLCACGFQCWETNIGGPGVALHSS 262
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A835Z5H2_9STRA (Mevalonate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.240e-14
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:    4 ALERVCEVAGGHGCKSKLTGAGGGGCALTILASDK-SLSKESLVRDMASEGFRCYESSLGGDGVLWH 201
            +L+ VC  A   GC SKLTGAGGGGCALT+L +D  S ++  L+ ++ + GFRCY S LGG GVL H
Sbjct:  349 SLDAVCAAAARRGCWSKLTGAGGGGCALTLLRADLVSAARADLIEELQARGFRCYASDLGGQGVLLH 415
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7S2DBR4_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DBR4_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.350e-13
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTIL--ASDKSLSKESLVRDMASEGFRCYESSLGGDGVLWHE-NGVP 216
            PALERVCE+A   G  +KLTGAGGGGCA +++  +S+   + + +   + +EGF CY +++GG G LWH  N +P
Sbjct:  111 PALERVCELADSEGLPTKLTGAGGGGCAFSLIGSSSEGEAAAQRVQAKLEAEGFTCYVTTVGGHGALWHSANAIP 185
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7K4S624_COLPI (KIME kinase (Fragment) n=1 Tax=Columbina picui TaxID=115618 RepID=A0A7K4S624_COLPI)

HSP 1 Score: 75.1 bits (183), Expect = 1.750e-13
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHEN 207
            P+L+R+C V   HG  SKLTGAGGGGC +T+L  D S LS E+  RD+ + GF C+E+S+G  GV  H +
Sbjct:  274 PSLDRLCRVTASHGLHSKLTGAGGGGCGITLLRPDTSTLSVEAAKRDLCACGFECWETSIGAPGVTLHSS 343
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7L3X1U8_9GRUI (KIME kinase (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7L3X1U8_9GRUI)

HSP 1 Score: 72.4 bits (176), Expect = 1.820e-13
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHEN 207
            P+L+R+C V   HG  SKLTGAGGGGC +T+L  D S L+ E+  +D+ + GF C+E+S+G  GV  H +
Sbjct:   88 PSLDRLCRVTASHGLHSKLTGAGGGGCGITLLRPDTSPLAVEAAKQDLCACGFECWETSMGAPGVTLHSS 157
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BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Match: A0A7K6SR13_CALNI (Mevalonate kinase (Fragment) n=6 Tax=Neognathae TaxID=8825 RepID=A0A7K6SR13_CALNI)

HSP 1 Score: 74.3 bits (181), Expect = 1.880e-13
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKS-LSKESLVRDMASEGFRCYESSLGGDGVLWHEN 207
            P+L+R+C V   HG  SKLTGAGGGGC +T+L  D S L+ E+  RD+ + GF C+E+S+G  GV  H +
Sbjct:  199 PSLDRLCRVTASHGLHSKLTGAGGGGCGITLLRPDTSALAMEAAKRDLCACGFECWETSIGAPGVTLHSS 268
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig843.16597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUV7_ECTSI1.030e-2471.23Mevalonate kinase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7K9D870_9AVES1.830e-1451.90Mevalonate kinase (Fragment) n=1 Tax=Hemiprocne co... [more]
A0A7S4B5A5_CHRCT1.930e-1454.05Mevalonate kinase n=1 Tax=Chrysotila carterae TaxI... [more]
A0A8C0FIZ2_BUBBB3.670e-1448.57GHMP_kinases_C domain-containing protein n=2 Tax=S... [more]
A0A7L4HAH5_PODST4.710e-1450.00Mevalonate kinase (Fragment) n=1 Tax=Podargus stri... [more]
A0A835Z5H2_9STRA9.240e-1455.22Mevalonate kinase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S2DBR4_9EUKA1.350e-1346.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7K4S624_COLPI1.750e-1351.43KIME kinase (Fragment) n=1 Tax=Columbina picui Tax... [more]
A0A7L3X1U8_9GRUI1.820e-1348.57KIME kinase (Fragment) n=2 Tax=Neognathae TaxID=88... [more]
A0A7K6SR13_CALNI1.880e-1350.00Mevalonate kinase (Fragment) n=6 Tax=Neognathae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig843contigS-dermatodea_contig843:21069..22728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D7FUV7
Preferred nameMK
KEGG rclassRC00002,RC00017
KEGG koko:K00869
KEGG ReactionR02245
KEGG Pathwayko00900,ko01100,ko01110,ko01130,ko04146,map00900,map01100,map01110,map01130,map04146
KEGG ModuleM00095
GOsGO:0000166,GO:0000287,GO:0003674,GO:0003824,GO:0004496,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006084,GO:0006139,GO:0006163,GO:0006629,GO:0006637,GO:0006644,GO:0006720,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009117,GO:0009150,GO:0009240,GO:0009259,GO:0009987,GO:0016125,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019287,GO:0019637,GO:0019693,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046490,GO:0046872,GO:0051186,GO:0055086,GO:0071704,GO:0072521,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901615
EggNOG free text desc.mevalonate kinase activity
EggNOG OGsCOG1577@1,KOG1511@2759
EC2.7.1.36
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.5408523-CDS-S-dermatodea_contig843:21070..213661622925342.5408523-CDS-S-dermatodea_contig843:21070..21366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 21071..21366 -
1694079868.769388-CDS-S-dermatodea_contig843:21070..213661694079868.769388-CDS-S-dermatodea_contig843:21070..21366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 21071..21366 -
1622925342.5512862-CDS-S-dermatodea_contig843:22661..227281622925342.5512862-CDS-S-dermatodea_contig843:22661..22728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 22662..22728 -
1694079868.7832663-CDS-S-dermatodea_contig843:22661..227281694079868.7832663-CDS-S-dermatodea_contig843:22661..22728Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig843 22662..22728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig843.16597.1prot_S-dermatodea_contig843.16597.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig843 21071..22728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig843.16597.1

>prot_S-dermatodea_contig843.16597.1 ID=prot_S-dermatodea_contig843.16597.1|Name=mRNA_S-dermatodea_contig843.16597.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
PALERVCEVAGGHGCKSKLTGAGGGGCALTILASDKSLSKESLVRDMASE
GFRCYESSLGGDGVLWHENGVPPELASAASTAAAGRGAGTAVAVARAGDA
AVERPRGFAGLLGGGLAGKRL
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mRNA from alignment at S-dermatodea_contig843:21069..22728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig843.16597.1 ID=mRNA_S-dermatodea_contig843.16597.1|Name=mRNA_S-dermatodea_contig843.16597.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1660bp|location=Sequence derived from alignment at S-dermatodea_contig843:21069..22728- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCCCTCGAGCGGGTGTGTGAAGTGGCGGGAGGTCATGGGTGCAAGAG
CAAGCTGACGGGAGCGGGTGAGCTCTTGATTTATTTTTGTGGAGGGGGGG
GGGGGGGGGTTGGGGTATGCGTTACTGACAAAGTAGTATAGGTGTGTAGC
CCACTGTAATATAATAGCAAGGGCGAGCAGAAGGGTTCATCAAAAGCAAC
AAAGAAAAGTCAATACGACAAAAGTATGCGGTCGAGACAAATCTCCTTGG
CTCACAAAGTACATCAAAAGTTACACTGCCATACACTACCAGGATATCGC
CCAGGACAGAGACACTTGTACCATGATCCTATAGCATCATACATGACATA
AAACCATAGCATCGTCCGTATCGTAAGCTTGAGCCTCCATAGATGTAGCT
TGGACTACATTTCCTTCTTTAAAAGGTGGGACCCGAACGCTCGGTCTATG
TTTCACACACACTCACACCCCTCCCCTAAGAAAATGAAACGACTTTTAAT
ACCTAGAGCGAGCGTTGGGGTCCCACCTTCTTTAAGGAAGGAAATATGGT
CAAATCTGTTATACACACCTATGGAGGCTTACGTTACGTTACGTGTGATG
CCTGCCATGGTTTTGTGTCCTGTGTATTTCTATAGGATCATTGTGCAAAC
ATCTGTTGTCTGGGAGGTATCTTGGTTGTATACCTTCGCCACTCCGGCCT
CCCCCCCCCCCCCCCCCCGTTGAACTGAGACCTACAACCCCCCTGCCTTT
GAGGCTCGAGGTGGGTTGGTCGAGGTAGGGTTGCTCTTGTGGCGTGGAGC
TGTCAAACTGCTCATTATAGGGCATGAGGGAGAGTTTATGTGCGTTTTAC
GAGCTCAAGAGACCTCGGTCGAAGACTCTTTTTTCTCCCCAAAGGGGGCG
AAACGCATCACATCCCATAGGGCCGCTGCTGAAGTCTGGATTTGGAACGC
CCTAGAGCAACCATTGACTTATGATTGGTACTCCGCCAGGAGTGCCCATG
AGCAGACTACAGTCTGACTTTGTTACATTTATAGCGTCGTGTATGCTGTG
TGCGTGCTGCGCTTCTACGTTCGCACGGAGATCAAAGTCCCTTTGCGGTA
CTTGGGAGTATAGTCACGCCTAAATACCGAATATTTGGCGTCGCAAACGC
AGGGATGATGGCTACAAGTAGGAGCTGGTATAATCCTTGTATAGCGCAGC
CTGGCCGGCAACAACCCGGCATATCGCTCCGTCCCGGCAGTGTTGGGACG
CGAGGTCTATGTCCGTCCGGATGCGACATGCGCTTACCATAACTACACCC
CCCCCCCTGATGTCCTCCGCTTTCCACACCCCTCGTATCCACTCCGCCCC
CGGGGTGGCCAGGTGGAGGAGGCTGCGCCCTGACAATCCTAGCGAGCGAC
AAAAGCCTGTCGAAGGAGTCGCTCGTGAGGGACATGGCCTCGGAAGGCTT
CCGCTGCTACGAGAGCTCTCTGGGGGGGGACGGGGTGCTGTGGCATGAAA
ACGGAGTTCCACCAGAACTGGCGTCGGCTGCTTCGACGGCAGCAGCGGGG
AGAGGGGCTGGAACTGCTGTGGCTGTTGCTCGGGCTGGGGATGCGGCTGT
GGAGAGACCTAGGGGGTTTGCTGGGCTGCTAGGAGGCGGTTTGGCTGGGA
AGCGGTTGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig843:21069..22728-

>mRNA_S-dermatodea_contig843.16597.1 ID=mRNA_S-dermatodea_contig843.16597.1|Name=mRNA_S-dermatodea_contig843.16597.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig843:21069..22728- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCCCTCGAGCGGGTGTGTGAAGTGGCGGGAGGTCATGGGTGCAAGAG
CAAGCTGACGGGAGCGGCCTGCCCTCGAGCGGGTGTGTGAAGTGGCGGGA
GGTCATGGGTGCAAGAGCAAGCTGACGGGAGCGGGTGGAGGAGGCTGCGC
CCTGACAATCCTAGCGAGCGACAAAAGCCTGTCGAAGGAGTCGCTCGTGA
GGGACATGGCCTCGGAAGGCTTCCGCTGCTACGAGAGCTCTCTGGGGGGG
GACGGGGTGCTGTGGCATGAAAACGGAGTTCCACCAGAACTGGCGTCGGC
TGCTTCGACGGCAGCAGCGGGGAGAGGGGCTGGAACTGCTGTGGCTGTTG
CTCGGGCTGGGGATGCGGCTGTGGAGAGACCTAGGGGGTTTGCTGGGCTG
CTAGGAGGCGGTTTGGCTGGGAAGCGGTTGGTGGAGGAGGCTGCGCCCTG
ACAATCCTAGCGAGCGACAAAAGCCTGTCGAAGGAGTCGCTCGTGAGGGA
CATGGCCTCGGAAGGCTTCCGCTGCTACGAGAGCTCTCTGGGGGGGGACG
GGGTGCTGTGGCATGAAAACGGAGTTCCACCAGAACTGGCGTCGGCTGCT
TCGACGGCAGCAGCGGGGAGAGGGGCTGGAACTGCTGTGGCTGTTGCTCG
GGCTGGGGATGCGGCTGTGGAGAGACCTAGGGGGTTTGCTGGGCTGCTAG
GAGGCGGTTTGGCTGGGAAGCGGTTG
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