prot_S-dermatodea_contig8426.16595.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8426.16595.1
Unique Nameprot_S-dermatodea_contig8426.16595.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length399
Homology
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BLAST of mRNA_S-dermatodea_contig8426.16595.1 vs. uniprot
Match: D7FJA1_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.380e-46
Identity = 194/228 (85.09%), Postives = 207/228 (90.79%), Query Frame = 0 
Query:  171 MCHFPGAILRSGLVFERVAALSLSGQGIGDGDIPASVARLAGGSLRSVDVSKNRLTVVPPGLLELGGVLEELNLGDNEIAEMPPEIANLTGLRSFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELCRIAVNPGLTVVPEGLAFAERLAWVSLAGTGWCARATEKRRR 398
            MC  PG +LRSGLVF+RV ALS+ GQGIGDGD+PASV RLAG  LR VD+S NRLT VPPGLL LG  LE+LNLG+N+IAEMPPEIA L GL  FNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LCR+AVNPGLTVVPEGL +AE+LAWVSLAG+ WCARA+EKRRR
Sbjct:    1 MCLLPGIVLRSGLVFQRVTALSMPGQGIGDGDVPASVVRLAG-VLRKVDLSGNRLTAVPPGLLGLGAGLEDLNLGNNDIAEMPPEIAKLGGLLFFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCRLAVNPGLTVVPEGLTYAEKLAWVSLAGSAWCARASEKRRR 227
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8426.16595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJA1_ECTSI2.380e-4685.09Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 259..281
e-value: 13.0
score: 12.2
coord: 305..327
e-value: 50.0
score: 7.5
coord: 328..351
e-value: 0.01
score: 25.0
coord: 237..258
e-value: 140.0
score: 3.8
coord: 282..304
e-value: 26.0
score: 9.9
coord: 213..235
e-value: 18.0
score: 11.1
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 261..316
e-value: 4.7E-8
score: 32.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 180..294
e-value: 7.0E-22
score: 79.5
coord: 295..389
e-value: 8.2E-17
score: 63.0
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 214..355
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 191..389

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8426contigS-dermatodea_contig8426:4254..9051 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8426.16595.1mRNA_S-dermatodea_contig8426.16595.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8426 4254..9051 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8426.16595.1 ID=prot_S-dermatodea_contig8426.16595.1|Name=mRNA_S-dermatodea_contig8426.16595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=399bp
SAGGGGGGGAGEGGETKSSNTNTNGNGRFENIPTCSCNSPSTATSAATAA
AASAAAVAATALVRRAAHGGTAKAAAAGTPRRGRHDRRSELNGNRRRRSR
TREGSGGSVAAGAAASLAGGASVGLASVGLGRKASAGGGSAVNAAAVEAA
AAAEVAARGATVVSVTSLRRMCHFPGAILRSGLVFERVAALSLSGQGIGD
GDIPASVARLAGGSLRSVDVSKNRLTVVPPGLLELGGVLEELNLGDNEIA
EMPPEIANLTGLRSFNMAGNRLTRVPPEVGKLSALRRLGLKGNALVRLPS
TIGDLSHLVELYLTGNILEALPNEIVKLRRLKKLQLSFNNLRSLPPGMEG
LRGLELCRIAVNPGLTVVPEGLAFAERLAWVSLAGTGWCARATEKRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf