mRNA_S-dermatodea_contig84246.16594.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: D8LKD0_ECTSI (SsrA-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD0_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 2.360e-16 Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query: 10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
RKARRNYE++EKF AGIEL+GSEVKSCRMSKINMDEGFAQ
Sbjct: 4 RKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQ 43
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7C4XE48_9BACT (SsrA-binding protein n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A7C4XE48_9BACT) HSP 1 Score: 59.3 bits (142), Expect = 7.470e-10 Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
A+ RKARR+YE+IE FE GIEL GSEVKS R S++N+D+ FA+
Sbjct: 5 ATNRKARRDYEIIEAFECGIELKGSEVKSLRQSRMNIDDSFAR 47
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7S4FCI8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FCI8_CHRCT) HSP 1 Score: 58.5 bits (140), Expect = 2.290e-9 Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
R+AR+NYEL+E++EAGI L+G+EVKSCR KIN+ +G+ Q
Sbjct: 40 RQARQNYELLEEYEAGISLVGTEVKSCRAGKINLRDGYCQ 79
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A235BUE1_9BACT (SsrA-binding protein n=1 Tax=candidate division WOR-3 bacterium JGI_Cruoil_03_51_56 TaxID=1973747 RepID=A0A235BUE1_9BACT) HSP 1 Score: 57.4 bits (137), Expect = 3.930e-9 Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1
Query: 1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
A+ RKA NY ++EKFEAGIEL G+EVKS R +KI++DEG+A+
Sbjct: 6 ATNRKALHNYIILEKFEAGIELAGTEVKSLRAAKISLDEGYAK 48
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7T5E3S4_9CYAN (SsrA-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5E3S4_9CYAN) HSP 1 Score: 57.4 bits (137), Expect = 4.530e-9 Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query: 10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
R+AR YE++E +EAGIELLGSEVKS R K+N+ +GFAQ
Sbjct: 15 RQARHEYEILETYEAGIELLGSEVKSIRQGKVNLRDGFAQ 54
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: D6GTG8_FILAD (SsrA-binding protein n=1 Tax=Filifactor alocis (strain ATCC 35896 / D40 B5) TaxID=546269 RepID=D6GTG8_FILAD) HSP 1 Score: 57.0 bits (136), Expect = 5.950e-9 Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGF 123
A RKAR NYE++E +EAGIEL G+EVKS R SK+N+ EGF
Sbjct: 10 AKNRKARFNYEILETYEAGIELKGTEVKSVRASKVNLTEGF 50
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: UPI00048D9160 (SsrA-binding protein SmpB n=1 Tax=Proteocatella sphenisci TaxID=181070 RepID=UPI00048D9160) HSP 1 Score: 56.6 bits (135), Expect = 8.100e-9 Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGF 123
A +KAR NYE+IE +EAGIEL G+EVKS RMSK+N+ +G+
Sbjct: 8 AKNKKARFNYEIIETYEAGIELKGTEVKSIRMSKVNISDGY 48
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A6H2NLS0_9CYAN (SsrA-binding protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NLS0_9CYAN) HSP 1 Score: 56.2 bits (134), Expect = 1.260e-8 Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query: 10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
R+AR YE++E +EAGIELLGSEVKS R K+N+ +G+AQ
Sbjct: 15 RQARHQYEILETYEAGIELLGSEVKSIRQGKVNLRDGYAQ 54
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: UPI0019EE95A5 (SsrA-binding protein SmpB n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019EE95A5) HSP 1 Score: 57.4 bits (137), Expect = 1.350e-8 Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query: 10 RKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
R+AR YE++E FEAGIELLGSEVKS R K+N+ +G+AQ
Sbjct: 107 RQARHQYEILETFEAGIELLGSEVKSIRQGKVNLRDGYAQ 146
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Match: A0A7C5UCM0_9BACT (SsrA-binding protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C5UCM0_9BACT) HSP 1 Score: 55.8 bits (133), Expect = 1.580e-8 Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 1 ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQ 129
A R+A+R+YE++E +EAGI LLGSEVKS R ++N+ EGFA+
Sbjct: 5 AVNRRAKRDYEILETYEAGIALLGSEVKSVRAGRVNLSEGFAK 47 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84246.16594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig84246.16594.1 >prot_S-dermatodea_contig84246.16594.1 ID=prot_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp ASRRKARRNYELIEKFEAGIELLGSEVKSCRMSKINMDEGFAQback to top mRNA from alignment at S-dermatodea_contig84246:117..245+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig84246.16594.1 ID=mRNA_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig84246:117..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig84246:117..245+ >mRNA_S-dermatodea_contig84246.16594.1 ID=mRNA_S-dermatodea_contig84246.16594.1|Name=mRNA_S-dermatodea_contig84246.16594.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig84246:117..245+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |