mRNA_S-dermatodea_contig8424.16593.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8424.16593.1
Unique NamemRNA_S-dermatodea_contig8424.16593.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: D7FIS3_ECTSI (Similar to retinally abundant regulator of G-protein signaling hRGS-r n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.210e-12
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPCTPPTP 132
            +TNFQ +FV TEGFRRIADASE E RE+RLLRAGGMLP   P+P
Sbjct:  220 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASPSP 263
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BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: A0A6H5KDM3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-12
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPCTPPTP 132
            +TNFQ +FV TEGFRRIADASE E RE+RLLRAGGMLP   P+P
Sbjct:  251 ETNFQREFVTTEGFRRIADASEVEHREIRLLRAGGMLPSASPSP 294
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BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: D7FIR7_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR7_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.000e-12
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPCTPPTP 132
            +TNF+ DFV TEGFRRI +AS+QEQRELRLLRAGGMLP   P+P
Sbjct:  128 ETNFRRDFVTTEGFRRILNASKQEQRELRLLRAGGMLPLGTPSP 171
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BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: A0A6H5K499_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K499_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.620e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPC-TPPTP 132
            +TNFQ +FV TEGFRRI DA+EQEQRE RLL+AGG LP  +PP+P
Sbjct:   54 ETNFQREFVETEGFRRIVDAAEQEQRENRLLQAGGFLPPDSPPSP 98
[Close]
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: A0A6H5KAT5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT5_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.550e-10
Identity = 33/45 (73.33%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGML-PCTPPTP 132
            +TNF+ DFV TEGFRRI +AS+QEQRELRLLRAGGML P   P+P
Sbjct:  373 ETNFRRDFVTTEGFRRILNASKQEQRELRLLRAGGMLLPLGTPSP 417
[Close]
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: D7FU02_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU02_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.960e-10
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPC-TPPTP 132
            +TNFQ +FV TEGFRRI DA+E EQRE RLLRAGG LP   PP+P
Sbjct:  128 ETNFQREFVETEGFRRIVDAAELEQRENRLLRAGGFLPPDAPPSP 172
[Close]
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: D7FIR9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.220e-9
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGML 111
            +TNFQ+DFV TEGFRRI DASE+EQ+EL LLR+GGML
Sbjct:  221 ETNFQSDFVTTEGFRRIMDASEKEQQELSLLRSGGML 257
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BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: A0A6H5JJQ0_9PHAE (RGS domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ0_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.280e-9
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPC-TPPT 129
            +TNFQ +FV TEGFRRI +ASE EQRE RLLRAGG LP  TPP+
Sbjct:  411 ETNFQREFVETEGFRRIVEASELEQRENRLLRAGGFLPPDTPPS 454
[Close]
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: D7FTZ9_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ9_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.110e-9
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLP-CTPPTP 132
            +  F+A+FV TEGFRRIA+ASE EQRE RLLRAGG LP  TPP P
Sbjct:  384 EAEFKAEFVETEGFRRIANASELEQREKRLLRAGGFLPPSTPPGP 428
[Close]
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Match: A0A6H5K0N5_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0N5_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 5.800e-9
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGML-PCTPPTP 132
            +TNFQ DFV TEGFRRI DASE EQRE+RLLRA G+L P    TP
Sbjct:  292 ETNFQRDFVETEGFRRIVDASELEQREMRLLRAEGVLVPSASTTP 336
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8424.16593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FIS3_ECTSI3.210e-1275.00Similar to retinally abundant regulator of G-prote... [more]
A0A6H5KDM3_9PHAE3.220e-1275.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FIR7_ECTSI6.000e-1275.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K499_9PHAE1.620e-1171.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAT5_9PHAE2.550e-1073.33RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FU02_ECTSI2.960e-1071.11Signal transducer, putative n=1 Tax=Ectocarpus sil... [more]
D7FIR9_ECTSI1.220e-978.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJQ0_9PHAE2.280e-972.73RGS domain-containing protein n=3 Tax=Ectocarpus T... [more]
D7FTZ9_ECTSI3.110e-971.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K0N5_9PHAE5.800e-971.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8424contigS-dermatodea_contig8424:6710..6841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog2880.D7FU04
Preferred nameRGS1
KEGG koko:K16449
GOsGO:0001101,GO:0003674,GO:0004888,GO:0004930,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005886,GO:0006950,GO:0007154,GO:0007165,GO:0007186,GO:0008047,GO:0008150,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009743,GO:0009746,GO:0009749,GO:0009756,GO:0009987,GO:0010008,GO:0010033,GO:0010035,GO:0010182,GO:0012505,GO:0016020,GO:0023052,GO:0030234,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0033993,GO:0034284,GO:0038023,GO:0042127,GO:0042221,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051336,GO:0051345,GO:0051716,GO:0060089,GO:0060589,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071322,GO:0071944,GO:0097305,GO:0097708,GO:0098588,GO:0098772,GO:0098805,GO:1901700,GO:1901701
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2CNEE@1,2QVMV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003150.1
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.2484999-CDS-S-dermatodea_contig8424:6709..68411622925342.2484999-CDS-S-dermatodea_contig8424:6709..6841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8424 6710..6841 +
1694079868.5521276-CDS-S-dermatodea_contig8424:6709..68411694079868.5521276-CDS-S-dermatodea_contig8424:6709..6841Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8424 6710..6841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8424.16593.1prot_S-dermatodea_contig8424.16593.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8424 6710..6841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8424.16593.1

>prot_S-dermatodea_contig8424.16593.1 ID=prot_S-dermatodea_contig8424.16593.1|Name=mRNA_S-dermatodea_contig8424.16593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=44bp
QTNFQADFVATEGFRRIADASEQEQRELRLLRAGGMLPCTPPTP
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mRNA from alignment at S-dermatodea_contig8424:6710..6841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8424.16593.1 ID=mRNA_S-dermatodea_contig8424.16593.1|Name=mRNA_S-dermatodea_contig8424.16593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at S-dermatodea_contig8424:6710..6841+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACGAACTTTCAGGCCGACTTCGTGGCCACCGAAGGCTTTCGCCGTAT
CGCGGATGCCTCCGAGCAGGAGCAGCGAGAGCTGCGGCTTCTACGCGCCG
GTGGCATGCTGCCCTGCACCCCCCCTACCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8424:6710..6841+

>mRNA_S-dermatodea_contig8424.16593.1 ID=mRNA_S-dermatodea_contig8424.16593.1|Name=mRNA_S-dermatodea_contig8424.16593.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at S-dermatodea_contig8424:6710..6841+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACGAACTTTCAGGCCGACTTCGTGGCCACCGAAGGCTTTCGCCGTAT
CGCGGATGCCTCCGAGCAGGAGCAGCGAGAGCTGCGGCTTCTACGCGCCG
GTGGCATGCTGCCCTGCACCCCCCCTACCCCGCAGACGAACTTTCAGGCC
GACTTCGTGGCCACCGAAGGCTTTCGCCGTATCGCGGATGCCTCCGAGCA
GGAGCAGCGAGAGCTGCGGCTTCTACGCGCCGGTGGCATGCTGCCCTGCA
CCCCCCCTACCCCG
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