mRNA_S-dermatodea_contig8423.16592.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8423.16592.1
Unique NamemRNA_S-dermatodea_contig8423.16592.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: D7FTB4_ECTSI (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB4_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 1.620e-150
Identity = 232/259 (89.58%), Postives = 242/259 (93.44%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKDEFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVMLSADCFNGSENNFVSVGADELPVAAAAQD-AEVSA 774
            GIEYLKEVVINDKLGIA+KLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQ RPMDWPKDEFIPDLHEEGSKP Q+L+G SSWV+VGSVSDFP +GGAAVLYGKSQLAVYNV RRNEWYATQNVCPHKRALVLSEGIVGSR+GILKVACPLHKNNFDLKSGECLDHMED+NM+LLTFPVKVEDG VFLDLPP +ELDQLLATEKVMLSADCF GSENNFV V  + LP A   QD AEVSA
Sbjct:  779 GIEYLKEVVINDKLGIAEKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQSRPMDWPKDEFIPDLHEEGSKPDQVLTGASSWVRVGSVSDFPTNGGAAVLYGKSQLAVYNVARRNEWYATQNVCPHKRALVLSEGIVGSREGILKVACPLHKNNFDLKSGECLDHMEDDNMRLLTFPVKVEDGGVFLDLPPTAELDQLLATEKVMLSADCFQGSENNFVPVQTNALPTAP--QDTAEVSA 1035
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A835YW55_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW55_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.630e-81
Identity = 143/233 (61.37%), Postives = 175/233 (75.11%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKDEFIPDLHEEGSKPHQILSGE----SSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVMLSADC 687
            GI+YLKEVVI+DKLGI  +L+ QMQ +VDTYQDEWA+VV D E+RK+FRQFVN+D  ERGI  I  R Q RP+DWP+D          SKP    +G     ++WV++G V DFP DGGA V YG+SQLAVY    RNEWYATQNVCPHKRALVLS+GI+GS++GI KVACPLHK NF L++G CLD   D+ M ++TFPVKVE+G+V+L LPP SELD +L T+ V+  ADC
Sbjct:  776 GIDYLKEVVISDKLGINAELENQMQFIVDTYQDEWASVVKDPEQRKSFRQFVNTDEVERGIGMIPDREQFRPIDWPRD----------SKPLDFGAGAVPAGTTWVKMGVVDDFPVDGGATVKYGESQLAVYRFESRNEWYATQNVCPHKRALVLSQGIIGSKNGIPKVACPLHKKNFSLQTGACLD---DDEMSVMTFPVKVEEGAVYLQLPPTSELDSVLGTKSVIFGADC 995
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A5C5X7K4_9PLAN (Nitrite reductase [NAD(P)H] n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X7K4_9PLAN)

HSP 1 Score: 240 bits (613), Expect = 1.530e-70
Identity = 122/232 (52.59%), Postives = 156/232 (67.24%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKD-----------EFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATE 663
            GI++L+EV+I+DKLG+ D+ +  ++H++ TYQ EW TVV D E+RK FRQFVN+D  E  I  ++ RGQ RP DWP +           E    L E  +KP      E+ W QVG+V DFP DGGA + YGKSQ+AV+    R EWYA+QN+CPHK+A VLS GIVG   G  KVACPLHK  F L+SGE L   + E+  + TFPVKVEDG+V+L+LPP   LD+LLATE
Sbjct:  156 GIDHLREVIIDDKLGLCDEFEELIEHLIATYQCEWTTVVKDPEKRKRFRQFVNTDEEESCIEIVSERGQTRPADWPGELVSLEQFQTLEEHQHHLEESATKP------ETRWTQVGTVDDFPVDGGATIKYGKSQIAVFRFESRGEWYASQNMCPHKKAFVLSRGIVGDEAGTPKVACPLHKKTFSLESGESL---QGEDYHITTFPVKVEDGNVYLNLPPTEVLDELLATE 378
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A2H5ZGD8_9BACT (Nitrite reductase [NAD(P)H] n=1 Tax=bacterium HR30 TaxID=2035425 RepID=A0A2H5ZGD8_9BACT)

HSP 1 Score: 239 bits (610), Expect = 2.120e-69
Identity = 118/230 (51.30%), Postives = 160/230 (69.57%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKDEFIP---DLHEEGSKP--HQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVML 675
            GIE +++VV++D+LGIA  L+AQMQ +V++Y+ EW  VV + ERR+ FRQFVN+   + GI  I  RGQ+RP+DWP D  +P   ++H    +   H + +G   WV+VG V DFPADG   VLYG++Q+AVY    R+EWYATQN+CPHKRALVL+ G++G  DG+  +ACPLHK  F L +G CL     E + L TFPV+V DG+V+L LPP   LD+ LAT++V L
Sbjct:  231 GIEQVRDVVVHDRLGIAADLEAQMQRLVESYRCEWTEVVRNPERRRWFRQFVNTQKVQPGIGLIQERGQRRPVDWPADASLPPPEEMHLSNGETLAHALRNGSRRWVRVGRVEDFPADGAGVVLYGRTQIAVYRFASRDEWYATQNICPHKRALVLARGLLGDHDGVPTIACPLHKKLFALTTGRCLSG---EPLTLATFPVEVRDGAVWLHLPPEELLDEALATDRVAL 457
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A6N9CBF1_9BACT (Nitrite reductase small subunit NirD n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6N9CBF1_9BACT)

HSP 1 Score: 246 bits (627), Expect = 1.080e-67
Identity = 129/250 (51.60%), Postives = 169/250 (67.60%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKDEF-IPDLHEEGSKPHQIL--SGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVMLSADCFNGSENNFVSVGADELPV 741
            GI+YL++V+++DKLGI D+L+ +M+H+VDTY+ EW  VV + E RK FRQF+N+D TE GI F++ RGQQRP  W KD   I D+    S   + L  S +  WV+VGSVSDFP DGGAA+ YGK+Q+AV+N   R EWYATQN+CPHK+A VLS GI+G   G  K+ACPLHK  F L+SG CL     E+ ++LTFPVKV+D  V+L+LP   ELD  L+TE    +     G E      GA + P+
Sbjct:  768 GIDYLRDVIVHDKLGICDELEKRMEHLVDTYKCEWREVVMNPEIRKKFRQFINTDATETGIEFVSERGQQRPKYWEKDLIPIEDVTLPSSAKLKALRESPDKQWVKVGSVSDFPYDGGAAIKYGKTQIAVFNFFSRGEWYATQNMCPHKKAFVLSRGIIGDAQGAPKIACPLHKKTFCLESGACLSG---EDYEVLTFPVKVKDNDVYLELPAQDELDATLSTENFCNTGTLPRGPEK-----GASKDPI 1009
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A6U3NRT0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NRT0_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.530e-67
Identity = 120/234 (51.28%), Postives = 155/234 (66.24%), Query Frame = 1 
Query:    4 IEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHT---ERGIPFIAMRGQQRPMDWPKDEFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVMLS-ADCFN 693
            IE+LKEV+I D LGI D+LD +MQH+VDTY DEWA VV D  RR  F+QFVNSD     E+ I FI  RGQ RP DWP D   P  + +          E SWV+VG+ SDF  + G+ +LYG SQLAV+N   R EWY TQN+CPHK+A VLS+GI+GS +G  KVACPLHK  F L+ G    H  D ++KL+TFPVK+E   V ++LP + E+D +L T  + ++ +DC +
Sbjct:  164 IEHLKEVIIEDSLGICDELDRRMQHLVDTYHDEWAEVVKDPVRRAKFKQFVNSDENIPREKMIEFIDQRGQLRPTDWPADGQ-PQTNWQAPSDDVFARSEKSWVKVGTTSDFDPNVGSPILYGDSQLAVFNNAHRGEWYCTQNMCPHKQAFVLSQGIIGSFEGAPKVACPLHKKQFSLEDG----HQFDGDLKLITFPVKIEGDDVMVELPAVEEVDAILGTNGLRVTKSDCID 392
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BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A7C7S2M9_9BACT (Nitrite reductase small subunit NirD n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A7C7S2M9_9BACT)

HSP 1 Score: 241 bits (614), Expect = 5.030e-66
Identity = 125/225 (55.56%), Postives = 153/225 (68.00%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKD----EFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATE 663
            GIE+LKEV+I DKLGI  +LD +MQ++VDTY+ EW  VVND ERRKAFRQFVN+D TE  +  I+ RGQQRP DWP +    E    L +   +   +   +S+WV+VG VSDFP +GGA +  GK Q+AV+N   R +WYA Q +CPHK+A VLS GI+G   G  KVACPLHK NF L SGE L+    E   +  F VKVE   VFLDLPPI  LDQ+LATE
Sbjct:  766 GIEHLKEVIIEDKLGICAELDERMQYLVDTYKCEWTEVVNDPERRKAFRQFVNTDETESSLEIISERGQQRPADWPSESVSLEQFKLLQQRLPEADLVQENQSAWVKVGIVSDFPTNGGATIKVGKVQIAVFNFESRGKWYACQQMCPHKKAFVLSRGIIGDVQGTPKVACPLHKKNFSLASGESLNG---EAYAIRVFQVKVEGEEVFLDLPPIEVLDQILATE 987
[Close]
BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A7C7X031_9PLAN (Nitrite reductase small subunit NirD n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X031_9PLAN)

HSP 1 Score: 240 bits (613), Expect = 7.310e-66
Identity = 127/241 (52.70%), Postives = 158/241 (65.56%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKD------------EFIPDLHEEGSKPHQILSGESS--WVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKVMLSA 681
            GI YLKEVVINDKLGI D+L+ +MQ +VDTY+ EW  VVND E+RK FRQFVN+D TE  I F+  RGQ+RP DWP+D            E      E   K H++ + + S  WV VG+VSDFP DGGA + YG  Q+AVYN   R EWYA QN+CPHK + VLS GI+G+  G  KVACPLHK  F LK+G CL     E++ +  FPV+V D  VFL+LPP  +L  LL+TE   ++A
Sbjct:  762 GIHYLKEVVINDKLGICDELERRMQDLVDTYKCEWKEVVNDPEKRKLFRQFVNTDETEPTIEFVDERGQKRPADWPRDGVPLVQIKMPGYESTNGNGESDGKSHRLPAKDLSRKWVPVGTVSDFPKDGGATIKYGDVQIAVYNFSSRGEWYACQNMCPHKNSFVLSRGIIGTAGGEPKVACPLHKKPFSLKTGACLSG---EDLSVKVFPVRVTDDQVFLELPPKEQLSALLSTELHCITA 999
[Close]
BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A7R9W3I0_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3I0_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.420e-65
Identity = 123/232 (53.02%), Postives = 157/232 (67.67%), Query Frame = 1 
Query:    4 IEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHT---ERGIPFIAMRGQQRPMDWPKDEFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKV-MLSADC 687
            IE+LKEV+I D LGI D+LD +MQH+VDTY DEWA VV D ERRK F+QFVN+D     E  + FI  RGQ RP DW  D   P  + +          E SWV+VGSVSDF  D G+ +L G +QLAV+N   R EW+ TQN+CPHK+A VLS+GI+GS DG+ KVACPLHK  F L++GE LD  +   +++LTFP+KVED  V ++LP   ELD +L T  + +L +DC
Sbjct:  577 IEHLKEVIIEDSLGICDELDRRMQHLVDTYHDEWAEVVKDPERRKKFKQFVNTDKNIPREDMVEFIDQRGQNRPADWAADGQ-PQTNWQAPDDDVFARSEKSWVEVGSVSDFAPDVGSPILIGDTQLAVFNFASRGEWHCTQNMCPHKQAFVLSQGIMGSLDGVAKVACPLHKKQFGLETGEQLDGGD---LRILTFPIKVEDDKVLVELPKQDELDAILGTNGLRVLKSDC 804
[Close]
BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Match: A0A354GZY4_9BACT (Nitrite reductase (NAD(P)H) small subunit (Fragment) n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GZY4_9BACT)

HSP 1 Score: 236 bits (602), Expect = 5.270e-65
Identity = 121/225 (53.78%), Postives = 155/225 (68.89%), Query Frame = 1 
Query:    1 GIEYLKEVVINDKLGIADKLDAQMQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPMDWPKDEFIP--DLHEEGSKPH-QILSGESSWVQVGSVSDFPADGGAAVLYGKSQLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNNFDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEK 666
            GI+ L+EV+I+D LG+ D+L+ QMQ++VDTY+ EW  VVND ERRK F+QFVN+D TE  I F+  R QQRP DW    FIP  +L   G     + +  +  WV VG V +FP DGGA + YG++Q+AV+N   R EWYATQN+CPH+R  VLS G++G  +G  KVACP+HK NF L+SG+C   M  E+  L  FPVKVE   V+L LPP+ ELD LLATEK
Sbjct:  603 GIQALREVIIHDSLGVCDELEKQMQYLVDTYKCEWKEVVNDPERRKFFKQFVNTDETEPTIEFVKQREQQRPADW-TTHFIPVSELTVRGDMAAPEPVEPDLRWVPVGKVWNFPHDGGATIKYGRTQIAVFNFASRGEWYATQNMCPHRREFVLSRGMIGDVNGKPKVACPVHKKNFSLESGKC---MSGEDYSLQVFPVKVEGDDVYLQLPPVEELDALLATEK 823
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8423.16592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTB4_ECTSI1.620e-15089.58Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A835YW55_9STRA2.630e-8161.37Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A5C5X7K4_9PLAN1.530e-7052.59Nitrite reductase [NAD(P)H] n=1 Tax=Thalassoglobus... [more]
A0A2H5ZGD8_9BACT2.120e-6951.30Nitrite reductase [NAD(P)H] n=1 Tax=bacterium HR30... [more]
A0A6N9CBF1_9BACT1.080e-6751.60Nitrite reductase small subunit NirD n=1 Tax=Candi... [more]
A0A6U3NRT0_9STRA1.530e-6751.28Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7C7S2M9_9BACT5.030e-6655.56Nitrite reductase small subunit NirD n=1 Tax=Nitro... [more]
A0A7C7X031_9PLAN7.310e-6652.70Nitrite reductase small subunit NirD n=1 Tax=Planc... [more]
A0A7R9W3I0_9STRA3.420e-6553.02Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A354GZY4_9BACT5.270e-6553.78Nitrite reductase (NAD(P)H) small subunit (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8423contigS-dermatodea_contig8423:2426..8435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.7
Seed ortholog evalue1.7e-117
Seed eggNOG ortholog2880.D7FTB4
KEGG rclassRC00176
KEGG koko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
GOsGO:0006807,GO:0008150,GO:0008152
EggNOG free text desc.monodehydroascorbate reductase (NADH) activity
EggNOG OGsCOG0446@1,KOG1336@2759
Ec32 ortholog descriptionBFD-like [2Fe-2S]-binding domain
Ec32 orthologEc-05_000240.1
EC1.7.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons6
Model size1598
Cds size708
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8423.16592.1prot_S-dermatodea_contig8423.16592.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8423 3247..8366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.1392379-UTR-S-dermatodea_contig8423:2425..32461622925342.1392379-UTR-S-dermatodea_contig8423:2425..3246Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8423 2426..3246 -
1694079868.449745-UTR-S-dermatodea_contig8423:2425..32461694079868.449745-UTR-S-dermatodea_contig8423:2425..3246Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8423 2426..3246 -
1622925342.2124054-UTR-S-dermatodea_contig8423:8366..84351622925342.2124054-UTR-S-dermatodea_contig8423:8366..8435Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8423 8367..8435 -
1694079868.5410764-UTR-S-dermatodea_contig8423:8366..84351694079868.5410764-UTR-S-dermatodea_contig8423:8366..8435Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8423 8367..8435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.1509757-CDS-S-dermatodea_contig8423:3246..33751622925342.1509757-CDS-S-dermatodea_contig8423:3246..3375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 3247..3375 -
1694079868.4690952-CDS-S-dermatodea_contig8423:3246..33751694079868.4690952-CDS-S-dermatodea_contig8423:3246..3375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 3247..3375 -
1622925342.1610796-CDS-S-dermatodea_contig8423:3832..39471622925342.1610796-CDS-S-dermatodea_contig8423:3832..3947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 3833..3947 -
1694079868.4804106-CDS-S-dermatodea_contig8423:3832..39471694079868.4804106-CDS-S-dermatodea_contig8423:3832..3947Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 3833..3947 -
1622925342.1725338-CDS-S-dermatodea_contig8423:4510..46411622925342.1725338-CDS-S-dermatodea_contig8423:4510..4641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 4511..4641 -
1694079868.4972708-CDS-S-dermatodea_contig8423:4510..46411694079868.4972708-CDS-S-dermatodea_contig8423:4510..4641Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 4511..4641 -
1622925342.1830685-CDS-S-dermatodea_contig8423:6436..65681622925342.1830685-CDS-S-dermatodea_contig8423:6436..6568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 6437..6568 -
1694079868.5099604-CDS-S-dermatodea_contig8423:6436..65681694079868.5099604-CDS-S-dermatodea_contig8423:6436..6568Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 6437..6568 -
1622925342.1927245-CDS-S-dermatodea_contig8423:6744..68941622925342.1927245-CDS-S-dermatodea_contig8423:6744..6894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 6745..6894 -
1694079868.5206718-CDS-S-dermatodea_contig8423:6744..68941694079868.5206718-CDS-S-dermatodea_contig8423:6744..6894Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 6745..6894 -
1622925342.2014208-CDS-S-dermatodea_contig8423:8315..83661622925342.2014208-CDS-S-dermatodea_contig8423:8315..8366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 8316..8366 -
1694079868.5307221-CDS-S-dermatodea_contig8423:8315..83661694079868.5307221-CDS-S-dermatodea_contig8423:8315..8366Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8423 8316..8366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8423.16592.1

>prot_S-dermatodea_contig8423.16592.1 ID=prot_S-dermatodea_contig8423.16592.1|Name=mRNA_S-dermatodea_contig8423.16592.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=236bp
MQHVVDTYQDEWATVVNDEERRKAFRQFVNSDHTERGIPFIAMRGQQRPM
DWPKDEFIPDLHEEGSKPHQILSGESSWVQVGSVSDFPADGGAAVLYGKS
QLAVYNVVRRNEWYATQNVCPHKRALVLSEGIVGSRDGILKVACPLHKNN
FDLKSGECLDHMEDENMKLLTFPVKVEDGSVFLDLPPISELDQLLATEKV
MLSADCFNGSENNFVSVGADELPVAAAAQDAEVSA*
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mRNA from alignment at S-dermatodea_contig8423:2426..8435-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8423.16592.1 ID=mRNA_S-dermatodea_contig8423.16592.1|Name=mRNA_S-dermatodea_contig8423.16592.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6010bp|location=Sequence derived from alignment at S-dermatodea_contig8423:2426..8435- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCATCGAGTACCTCAAGGAAGTCGTGATCAACGACAAGCTGGGCATCGC
GGACAAGCTCGACGCGCAGATGCAGCACGTGGTCGACACCTACCAGGACG
AGTGGGCTACCGTCGTTAACGTAAGAGCGACGACTGTTTCCACTGGCGAC
CGGCACTTCTGTCTGTTGCGGCATGCATATACTTCGTATGTATGTATACA
GTATATATACAAGACACCCTTCAGACGTAACCCTATCTCAAGGCTTGCTA
AAGGTTTCGCGGGGTGACGCAAGCGGGATGGCATGCCCTCAATCGAGTAG
GCGAAGACGCCACGTGCGCGCAACGCACACAACGACCCCACAAAAACACC
AACCAAAGTACATACAGTACAGGCAGTGTGGACCAACAAGAGGAAGAAGC
TCATAAAAACTCTCAAAAATATGCTATTAATAGTACGGGAGACAAGACCA
TAGTTAACAGGTCCAAATTTGCCACAAGTGTCAACCTAGAAAAATCAAAA
TAGGCTGGAGTTATCGAGGTTCAGTGCGACAAAAATCAAAGGTGAGAACC
GGGGATAAGATAGATGGGATGATCCCTTGTGACCACAGATGGACCTACCT
CGGAAAATAAAGTCTGTCATAATGTGTGCCAAAAAAATAAATAAAAAAAA
GTCGTTGTTCTTGTGTATGGCCATACCTCGTGTCTTGATTTGTTTTTCGT
GAGATTTTTGTTGTTTTAGGTATTCATGTTCGGAATTGTTGGGTACTCAC
GGTCATGAGATTTGGTTCTGATTACTGTGCACCTCCCTAAATAGTACGTT
CTTTATATATATATATATATGTATATACACACAGTTTTTGTTCTTGTTTT
TGGTCGTGCCATTGCAGGTTCTCGCCACCGTGTCTTTTGCGTTTTGCTGA
GTTTACCTGCGCCGAGTTTATGTTGTATTTATTGGGCATGCATACTTGTA
TAACCCACCCGAGCCATATGAAACTCCCGCGGTCGTACCAGATCATCCTG
TCTCTATCCGGTGCCAATCTCAATTTTTATCGCGCACCGGGGTCGGGCCA
GGCTGGCCAAAACCCTCAGCCCTCTCGCCGATTTTCAACTCGAGCTGCCT
TCTTAATTCTTATGCTCTCGAGCTTTAGTGGTAAAAAACGGAGCGAGGTT
GCCTCTAAACTAGGGTTAGTATAATATTACACCTGCGCCGATAAACACGG
AAAGAGCCTGGCTATCGAATTCCCCTCCGTCTGGATCATACTCCAAGCCG
CCTCGTCTAGAGCGGAAGACTACCCGCGGTTAACCGCCGTTGTTGGCGCA
TCCGACTGGAACGCTCCTCAGATTTCGCCATCCCCTTATATCCGACCGCG
AATGAGTCCCTCGGGGGTGTGGTGGAAGCAGCCAGTGCCAGCCCACCACT
AACGCCAGGAGACAGTTATATTGCTACAGTAGTATTGGCTTGTTGTGCAG
AAGACTTATTTCGCCGAGTGCAGCCTAAACGTAACCCTGGACCTCCTAAT
TGCGCGCATACCCAAATATTTTATCGGAAAAATATTTTCAGGACGAGGAG
CGACGCAAGGCGTTCCGCCAGTTTGTCAACTCCGACCACACGGAGCGCGG
AATTCCCTTCATCGCCATGCGAGGCCAGCAGCGACCTATGGACTGGCCCA
AGGACGAGTTCATCCCTGACCTTCACGAGGAGGGCAGCAAGGTGCGACCC
CTTAACAACCTATAGCCCCCACCCGTCGTTTTGAGGGTTGGGACTGGTTG
ATTCTTACGCTGATACCCGGTTGGCCAATTTCCAATCGCGTTGATGGTGG
CGCATCGTATCGCTTACACGACCTCCTCCGTCGCCGCCCTCGCTGGCCTT
GTCCACGTGTCTCGCAGCCTCACCAGATCCTCAGTGGAGAGTCATCGTGG
GTGCAAGTGGGCTCCGTGAGCGACTTCCCCGCCGATGGTGGTGCCGCCGT
CCTGTACGGCAAGAGCCAGCTGGCCGTCTACAACGTCGTTAGAAGAAACG
TGAGGGGAACTGTTGGCCGTGTAATTGCGTCGCGGGCCTGTGTGGCTCGA
GACCAGCTGAGCTACAAGAGTATAGCCCTTTTGCTAGGGTTATGAGTCGG
CTGGCGTAGCCAGCTTAGACTAATCGGCTGGCGAAGGCAGGCGACTATCC
GACTATTGCCAACAAATCGGCGTCGCCGATTAGTTGGCCATGGTCGGGCG
AGCGCAGCGAGCCGGCGCCGCCGGCTATACGCTGCCGCGTGAAAAACGCC
ATACCAGGACCTATGAAACCCAAAGGCCAACTACTCGGGATACCCCGCAG
CCGACTGACTGACTATACCATAATTTAGTCAGTCGGACTAGAGTCAGAGC
CGGCTCACAACTCTACCTTTCCCCCCTTGTCGTTGGCCCAGTCCCAGCGG
TCGACCCTTTGCGGCCTTCATCGCGACCACCAGGGTAAATGGTATCGCTG
CAGGCAAGCGGTGGCAGTATGTACGACCAGCAGAGACGCTAATGTCCGCG
TTAGAAGGAACCACGGGGCAAATAATCTTCGCGTTGTCGTCGTGTGTCTC
GTTATGAAACCACGGTGTTAGTGCGCGTGATTGCCCCGGTGTTACCAATA
CAGAGGGAGTGGAGTAGATGGCAAATAGAGGCATGTCTAGGAAACTTGTG
TGCTCCTCGATAAACTAGGAAACTCCGAAAACGACAGTCTGCCCTGACGA
CGTCTAAATCCAACCCTTATTCCGGCCAAACATTATTGGCTTAGGTGAGA
ACCGGGGAGAGATGGGATGATCCCTTGTGACCACAGATGGACCTCGGAAA
AGAAAGTCTATCATATGTGTGCCAAAAAAACAAAACAAAAAAGTGATACG
CCATTTGGTGGTCGGTCAACTACTCAATATTTGGGTATAGTAACTATTGA
TTTATTGGTATATTCATTATCACTCATACAACCGACCGGCCCACCAGTTT
CCCAATTGCACAAGTGGATGCCGATCCCGCTCGTGGTCCTCACATGAAGG
CACAAGATCAAGTGAAATCCAGCACCCCTACACCGAACAAAAACCTGATG
TTCAGACGTGACGAAGATATAAACCCGAACGCCGCCCGGATCGCCTGGCC
CTCTGATTTACAGGAAAACTACCATAATAATGCATGGTCCACGGTGATGT
GATGCATACCGGGCGCTCTTCCGCGAGGCTTTGGCTTAGGACCCGAGTCC
GTTTTTTTGCCGAATGGTGTGACTATTATACTGAATACTGACTGCGAGCG
CACCGTGCATGCGAGCTAAGCGGTGTACGGGGCCGATTTAGTACCGCCTC
TACACAGACGAGTATATATAGTACAAAACACACGCGCCCCGTGGTTGAAC
TGGTTTACCAGCAGCCCAGTAGGCGGAGGACCCGGGTTCAAATCCCGGCA
GAGTCGATATTTATATATTTTCTCCACTTCCGCCGCGGAAAGCGCGAGAG
CGTGAGTGAGAACAAATACGAGAAATCGGCTGTAGAGCTTTGGGAGTGCC
GAACCCGATGCATTTGCGATAAAAATCAAAGGTGAGAACCAGGGATATGA
GATGGGATGATCCCTTGTGACCACAGACGGACCTACCTCGGAAAAGCAAG
TCTACCATATTAATATGTGTGCCAACAATAACAACAACAGCACAACTACT
GTAGCTGTTCGACGCGAAACAAAACGAATGGTGTATAGTATAGACTCAGC
ACGTATCGTGCGAGCATCTCATCCGGCGCCCCGTTCGTCCCCGCCAACTT
CTTCATCGTCCCGACGCGTCTTGTCTCTCTTTTTCCCTCGTCAGGAATGG
TATGCCACCCAGAACGTCTGTCCCCACAAGCGGGCGCTCGTGCTGTCCGA
GGGAATCGTGGGCAGCAGGGACGGCATCCTCAAGGTCGCCTGCCCTCTTC
ACAAGAACAACTTCGACCTCAAGAGGTGCGCTGCGGGGAGTCGTTGGCCT
ATTGGTGTTACTTTGGCTTCGCAGGGTCGCTGCCATTTTGTGGGGACCGT
TGGTTTTTTTAATGGCGAAACGCGGACGTGGAGGGCTTTCTGGTACCCAA
GGGTATGTCTGATTTGCGGGGGGGTTACTCATAGCGTTGGTTGTGTTTCT
GCGCTTTATATCTAGACGATCGGTGCTGCTTTTTGATGGGTTCGCTGTAA
CGGAAAGAGGCCCTCAGTGCCGGTACAGTCACGGCGTACAGCGGGGAGCG
CTTTTGAATTTGTCGAGACGGTGAACTGGTGTGAAGGTCGATGAGCGATT
GCGTGCTACCCTCGGTGAACATTCTACTTCTCCGTCTGCTCCTACCTTGC
TTTGCGGGGCTCAGAAATACATTCACGCCGGCAACAATCTTCTAAGACAT
GACAGTACGAGAGGCACGTGATGCGGATGGGTGCAAACGATTGGGACGCA
TTCCGTTGCTGACTGACCGCCGCACTTTTCCCCGACCGCGACGCGTTTCG
TGTTTCTGCCTTGTTTTTTTTTCTCGTATTGTTTTCAGCGGCGAATGCCT
TGACCACATGGAAGACGAGAACATGAAGCTGCTCACGTTCCCGGTCAAGG
TGGAGGACGGAAGCGTCTTCCTCGACCTACCGCCGATCTCCGAGCTCGAC
CAGGTGGGCTATCGTTTGGACGAATTTTAAGAGTGTTGAGTAGACCGAAC
GGGACTCGCTATGGCGCTGTTGGTTATATTTTTTGTTTTTTTGTTTTTTT
GTTTTTTATCATCACACATATAACCGAACCGTCAGCCACTTTTGAAGTAG
CAAACGTTGATGCTGATCCCGCTCGTGGTCACATGAAGGCACAAGAGCAA
GTTAAATCCAGCACTTGTTCACCGAACAAACAAAACTGATGTCCAGGCAT
GACAGATATACCTAAACCCGCACGCCGCCCGGAGCGCCTGACGCCCTGTT
GTACGTCGGTGTCGTGGCTGTGAGACCAATCGTCACATCTTTGTAGAGAA
CCGGCGCTTGCTAATTGTGTCTCAGGGGTGCGTGTGCGTGTCGCCATGTT
GTCCTTGCTGCTGACTTCCTCCCTGCGGTCCTTTTGTTTTTTTACACCTT
TTGCGATCAGCTCCTGGCGACTGAGAAGGTGATGCTCAGCGCCGATTGCT
TCAACGGCTCGGAGAACAACTTCGTTTCCGTGGGGGCCGACGAGTTGCCA
GTCGCCGCCGCCGCGCAAGACGCCGAAGTCTCTGCCTGAACAATTTAAGA
GATCATCCCGCGGGCTAGGCATGTCGTTGGACTCATAAGACTAATAGTTC
GCTGTTCATTTTATTGAAACATCCGTGGATTCGTGGGCGACCCGTGGCAG
CGTTTTTGCAAACTCTTCTATCTTATTAATAATGGATTGTTTTTCGCCAC
TCTGGGATGTGTTCTAACGACCTTTTCCGGGCCGATCTGCTGGCCAGTCA
CACTTGCCCGGCCCGAAGAAAAGTATTTCGTTTCGCTCCTGGGTGGCATA
CCTAGGGAATGGCTGTACAGTGACGTTCGACGATGGCCGCGCACGAAACT
GAAGACGCCAAAAAGTAGATGGGTGAGGAGGGGGGAGGCGCCAAATGCGT
CCGTTCATGTACCAAGGTGCGGCTAATTGAGGGAGCCGTGAAGTGTCCGA
GTTCGCCCACCGGACGCCCTTTCTGGCCTTAACCCCCCCGCGGTGCTGCA
CCCCCCAGCACCGCTGCTTGCCCTCGCTGTACGTATTATACATTTTTGTT
TTCCGGTATCACGCCTGTGGTTTTGGCCGAATACTAATTAGGTTTGCTGG
TGGCACGCTGTGCGTGCGTGGGTGCGTAGACGACTCGATTTTGACGGATC
CCCTGAGCGTGGCACTGTTTTAGCTTATAATAGGTTTTTGATGTGATTTT
TCGATACTGCCTCTTTTGAGCATGATCGAGCATGATCCAGGCCCCCGGAT
ATGACACAGTGGCGTTCTTGGCCAGCAACTTAAGCTGATAATTATCAGTG
TAGTTGAGAGGTCTTAGCCGGCGCCGCCCCCGGTGAGGGCGGGCGAAGGG
GGGAGGGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8423:2426..8435-

>mRNA_S-dermatodea_contig8423.16592.1 ID=mRNA_S-dermatodea_contig8423.16592.1|Name=mRNA_S-dermatodea_contig8423.16592.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at S-dermatodea_contig8423:2426..8435- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGCACGTGGTCGACACCTACCAGGACGAGTGGGCTACCGTCGTTAA
CATGCAGCACGTGGTCGACACCTACCAGGACGAGTGGGCTACCGTCGTTA
ACGACGAGGAGCGACGCAAGGCGTTCCGCCAGTTTGTCAACTCCGACCAC
ACGGAGCGCGGAATTCCCTTCATCGCCATGCGAGGCCAGCAGCGACCTAT
GGACTGGCCCAAGGACGAGTTCATCCCTGACCTTCACGAGGAGGGCAGCA
AGGACGAGGAGCGACGCAAGGCGTTCCGCCAGTTTGTCAACTCCGACCAC
ACGGAGCGCGGAATTCCCTTCATCGCCATGCGAGGCCAGCAGCGACCTAT
GGACTGGCCCAAGGACGAGTTCATCCCTGACCTTCACGAGGAGGGCAGCA
AGCCTCACCAGATCCTCAGTGGAGAGTCATCGTGGGTGCAAGTGGGCTCC
GTGAGCGACTTCCCCGCCGATGGTGGTGCCGCCGTCCTGTACGGCAAGAG
CCAGCTGGCCGTCTACAACGTCGTTAGAAGAAACCCTCACCAGATCCTCA
GTGGAGAGTCATCGTGGGTGCAAGTGGGCTCCGTGAGCGACTTCCCCGCC
GATGGTGGTGCCGCCGTCCTGTACGGCAAGAGCCAGCTGGCCGTCTACAA
CGTCGTTAGAAGAAACGAATGGTATGCCACCCAGAACGTCTGTCCCCACA
AGCGGGCGCTCGTGCTGTCCGAGGGAATCGTGGGCAGCAGGGACGGCATC
CTCAAGGTCGCCTGCCCTCTTCACAAGAACAACTTCGACCTCAAGAGGAA
TGGTATGCCACCCAGAACGTCTGTCCCCACAAGCGGGCGCTCGTGCTGTC
CGAGGGAATCGTGGGCAGCAGGGACGGCATCCTCAAGGTCGCCTGCCCTC
TTCACAAGAACAACTTCGACCTCAAGAGCGGCGAATGCCTTGACCACATG
GAAGACGAGAACATGAAGCTGCTCACGTTCCCGGTCAAGGTGGAGGACGG
AAGCGTCTTCCTCGACCTACCGCCGATCTCCGAGCTCGACCAGCGGCGAA
TGCCTTGACCACATGGAAGACGAGAACATGAAGCTGCTCACGTTCCCGGT
CAAGGTGGAGGACGGAAGCGTCTTCCTCGACCTACCGCCGATCTCCGAGC
TCGACCAGCTCCTGGCGACTGAGAAGGTGATGCTCAGCGCCGATTGCTTC
AACGGCTCGGAGAACAACTTCGTTTCCGTGGGGGCCGACGAGTTGCCAGT
CGCCGCCGCCGCGCAAGACGCCGAAGTCTCTGCCTGACTCCTGGCGACTG
AGAAGGTGATGCTCAGCGCCGATTGCTTCAACGGCTCGGAGAACAACTTC
GTTTCCGTGGGGGCCGACGAGTTGCCAGTCGCCGCCGCCGCGCAAGACGC
CGAAGTCTCTGCCTGA
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