mRNA_S-dermatodea_contig8422.16589.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI) HSP 1 Score: 230 bits (586), Expect = 7.420e-67 Identity = 114/167 (68.26%), Postives = 137/167 (82.04%), Query Frame = 1
Query: 1 GAVAVTVSSGELGQARVIGQAGRKFILLRAGTGGILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSRGG---APSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILNYK 492
GAVAVTV+ EL +A +IGQAGRKFILLRA TG +LC+DQHAADER+KLEELERQVFG R+RRN++RL+L PPE L IT SD ELLE+HR+VLSSW+F+ + +GG P TL +VP+VCGVR+SVQD + FL++LRESVEPG SAR +RPPQVQHILNYK
Sbjct: 1389 GAVAVTVTPEELSEALLIGQAGRKFILLRAKTGAVLCLDQHAADERVKLEELERQVFGEGRERRNVERLLLDPPEKLSITRSDAELLEEHREVLSSWQFEVRVDQAQQGGDGLTPVVTLTAVPMVCGVRLSVQDFVGFLHFLRESVEPGQSARRLRPPQVQHILNYK 1555
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A6H5JXH6_9PHAE (MutL_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXH6_9PHAE) HSP 1 Score: 154 bits (389), Expect = 1.530e-44 Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 163 QVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSRGG---APSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILNYK 492
+VFG R+RRN++RL+L PPE L IT SD ELLE+HR+VLSSWRF+ + G +GG P TL +VP+VCGVR+SVQD + FL++LRESVEPG SAR +RPPQVQHILNYK
Sbjct: 15 KVFGETRERRNVERLLLDPPEKLSITRSDAELLEEHREVLSSWRFEVRVDQGQQGGDGLTPVVTLTAVPMVCGVRLSVQDFVGFLHFLRESVEPGQSARRLRPPQVQHILNYK 127
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A7S3YN81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YN81_HETAK) HSP 1 Score: 91.3 bits (225), Expect = 2.560e-19 Identity = 55/174 (31.61%), Postives = 90/174 (51.72%), Query Frame = 1
Query: 7 VAVTVSSGELGQARVIGQAGRKFILLRA------------GTGG-----------------ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSR-----GGAPSATLLSVPIVCGVRMSVQDLMSFLNYLRES 426
+ +S+ +L A +IGQ RKFIL R GTGG +L VDQHAADER++LE LE Q++G R +++ ++ ++P + + ++ ++ ++ + +++ L+SW F F H S GG TL ++P V GVR++ DL L L E+
Sbjct: 85 IPTNLSAKDLSNAAIIGQLDRKFILCRVSSADGGDERLPTGTGGQSGSGSGGRGKVSRGGLLLAVDQHAADERVRLEALEAQIYGASRTEKHVRKVKISPTKKIRVSCNEADVADSYKEELASWGFCFNRCHESSEATTMGGHEWLTLTALPEVLGVRLAPADLQDLLARLVEA 258
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A833WJM2_PHYIN (MutL C terminal dimerization domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WJM2_PHYIN) HSP 1 Score: 87.8 bits (216), Expect = 4.000e-17 Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 1
Query: 13 VTVSSGELGQARVIGQAGRKFILLRAGTGG---ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSRGGA------------PSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILN 486
+ +S L + +VI Q RKF+L++A T +LC+DQHAADER++LE+LE ++FG + R +D PP L + + E+L Q+ ++ SW FDFELT L + P V + D F+ L + E ++ +RPP + +L+
Sbjct: 691 IKISKSTLAKLQVIRQVDRKFVLVQADTPQGKLVLCIDQHAADERVRLEQLEEEMFGHDGSLRRVDIQEHEPPIVLRVNFKEREVLSQYDDLIRSWGFDFELTVSEPESVFCVRTEHEPDDRNRVLLYATPKVEKRAANADDFREFIQVLANAGETYQHSQ-IRPPVITRLLH 862
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: W2G1M6_PHYPR (MutL_C domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G1M6_PHYPR) HSP 1 Score: 87.0 bits (214), Expect = 4.550e-17 Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 13 VTVSSGELGQARVIGQAGRKFILLRAGTGG---ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFE---------LTHGSRGGAPSAT---LLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILN 486
+ VS L + +V+ Q RKFIL++A T +LC+DQHAADERI+LE+LE ++FG + R ++ PP L + + E+L+Q+ ++ SW FDFE ++ + T L + P V + D F+ L + E S ++ +RPP + +L+
Sbjct: 180 IKVSKSTLAKLQVVRQVDRKFILVQADTSRGKLVLCIDQHAADERIRLEQLEEEMFGRDGSLRRVEIQKHGPPLVLRVNFKEREVLKQYEGLIKSWGFDFESVTSEPELFISMHRKSELDDKTRVLLYATPKVEKRAANADDFREFIQLLASAGETYSHSQ-IRPPVITRLLH 351
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: W2R2C9_PHYPN (MutL_C domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2R2C9_PHYPN) HSP 1 Score: 87.0 bits (214), Expect = 7.410e-17 Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 1
Query: 13 VTVSSGELGQARVIGQAGRKFILLRAGTGG---ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFE---------LTHGSRGGAPSAT---LLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILN 486
+ VS L + +V+ Q RKFIL++A T +LC+DQHAADERI+LE+LE ++FG + R ++ PP L + + E+L+Q+ ++ SW FDFE ++ + T L + P V + D F+ L + E S ++ +RPP + +L+
Sbjct: 669 IKVSKSTLAKLQVVRQVDRKFILVQADTSRGKLVLCIDQHAADERIRLEQLEEEMFGRDGSLRRVEIQKHGPPLVLRVNFKEREVLKQYEGLIKSWGFDFESVTSEPELFISMHRKSELDDKTRVLLYATPKVEKRAANADDFREFIQLLASAGETYSHSQ-IRPPVITRLLH 840
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A7S4ULW0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4ULW0_9EUKA) HSP 1 Score: 82.4 bits (202), Expect = 7.550e-16 Identity = 55/159 (34.59%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 16 TVSSGELGQARVIGQAGRKFILLRAGTGGILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSRGGAPSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILNYK 492
T++ L VI Q +KF+L + G +L VDQHAADER++ E+LE Q+FG +RN+ L+ SL + + LLE+ R L SW + F + +L SVP V V + QD FL +E +R++RP ++ IL K
Sbjct: 82 TLTKEMLKSVEVINQMDQKFLLCKIGDI-LLAVDQHAADERVRYEKLEDQIFGECGQKRNLQVEFLSHSISLDMNEHERYLLERFRACLESWGWSFSDLQSN------VSLFSVPKVMNVVLDHQD---FLKQFLSELEQSGGSRYLRPQKITKILQSK 230
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A662XGW8_9STRA (MutL_C domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XGW8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.030e-16 Identity = 61/176 (34.66%), Postives = 84/176 (47.73%), Query Frame = 1
Query: 13 VTVSSGELGQARVIGQAGRKFILLRAGTGG---ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELT--HG-----SRGGAPSAT------LLSVPIVCGVRMSVQDLMSFLNYLRESVEPG--SSARWVRPPQVQHILN 486
V +S L +VI Q RKFIL +A T +LC+DQHAADER++LE LE VFG + +RN+D PP L + A + E L + ++ SW FDFE H S P L S P V + + F +LR G S ++RPP + +L+
Sbjct: 19 VKISKSVLATLQVIRQVDRKFILAKASTPRGSLLLCIDQHAADERVRLESLEAAVFGPDGSQRNVDFHEHEPPLILLMNAKERETLWGNEDLVRSWGFDFECVSCHSESSFLSDPNTPEQNREGHVLLHSTP---KVEKRIANADDFREFLRHIACTGGYSGYSYIRPPVITRLLH 191
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A662X288_9STRA (MutL_C domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X288_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 1.380e-15 Identity = 58/176 (32.95%), Postives = 82/176 (46.59%), Query Frame = 1
Query: 13 VTVSSGELGQARVIGQAGRKFILLRAGTGG---ILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGS-------------RGGAPSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPG--SSARWVRPPQVQHILN 486
V +S L +VI Q RKFIL++A T +LC+DQHAADER++LE LE VFG + +RN+D P L + A + E L + ++ SW FDFE + G L S P V + + F +LR G S +RPP + +L+
Sbjct: 253 VKISKSVLATLQVIRQVDRKFILVKASTPRGSLLLCIDQHAADERVRLESLEAAVFGPDGSQRNVDFHEHQPALILLMNAKERETLWGNEDLVRSWGFDFECVSSQSENSFLSDRKTPEKNGEGHVLLHSTP---KVEKRIANADDFREFLRHIAGTGGYSGCSHIRPPVITRLLH 425
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Match: A0A8K1CMV7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMV7_PYTOL) HSP 1 Score: 83.2 bits (204), Expect = 1.630e-15 Identity = 55/162 (33.95%), Postives = 77/162 (47.53%), Query Frame = 1
Query: 34 LGQARVIGQAGRKFILLRAGT-----------GGILCVDQHAADERIKLEELERQVFGTERDRRNIDRLVLTPPESLPITASDGELLEQHRKVLSSWRFDFELTHGSRGGAPSATLLSVPIVCGVRMSVQDLMSFLNYLRESVEPGSSARWVRPPQVQHILN 486
L + VI Q RKFIL + G ILC+DQHAADERI+LE LE VFG+ D RN+D + P L + A + + L Q+ + + SW F+F++ G L P + DL +L L S+ S +RPP + L+
Sbjct: 739 LSRLEVIKQVDRKFILAKVFNSDGHDDQSDEKGLILCIDQHAADERIRLEALEASVFGSLGDERNVDVMEHPEPLCLNVNAQEHDTLVQYEEEIRSWGFEFDIN-----GHEQIWLSHTPKIDSRIAQPDDLREYLQLL-SSLRGASVGNTLRPPVITRFLH 894 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8422.16589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8422.16589.1 >prot_S-dermatodea_contig8422.16589.1 ID=prot_S-dermatodea_contig8422.16589.1|Name=mRNA_S-dermatodea_contig8422.16589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp GAVAVTVSSGELGQARVIGQAGRKFILLRAGTGGILCVDQHAADERIKLEback to top mRNA from alignment at S-dermatodea_contig8422:2866..5603- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8422.16589.1 ID=mRNA_S-dermatodea_contig8422.16589.1|Name=mRNA_S-dermatodea_contig8422.16589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2738bp|location=Sequence derived from alignment at S-dermatodea_contig8422:2866..5603- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8422:2866..5603- >mRNA_S-dermatodea_contig8422.16589.1 ID=mRNA_S-dermatodea_contig8422.16589.1|Name=mRNA_S-dermatodea_contig8422.16589.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig8422:2866..5603- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |