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Homology
BLAST of mRNA_S-dermatodea_contig8421.16588.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE) HSP 1 Score: 159 bits (402), Expect = 2.680e-41 Identity = 97/181 (53.59%), Postives = 116/181 (64.09%), Query Frame = 1
Query: 178 LEAQRMRTSRIYCEACPGDGIVEFTANRDMRGGGDSWNGLVTAVAAEYVQELPLGNVIGIEAVVVSDLPGNTGDWQLG----VKASTGGSH---------EGGGYGW--------GNAARCALLMAAATFLEEVLGMRNQFPRMKAMRCYSASLRC---RPTAADKAKRKADNARNNTLQS 648
+EA+R+RTSR+YCEACP DG+ EF A+ +MRGGG SW GLVTAV AEYV ELP G ++G+EAVVVSD+PGNTG A++GG +GG G AARCAL MA+ATFLEEV+GM FPRMKAMRC+SASLRC R A D AR+N+ S
Sbjct: 463 MEAERLRTSRVYCEACPDDGVTEFLADGEMRGGGPSWKGLVTAVVAEYVHELPEGALVGMEAVVVSDVPGNTGRRHSAPTDEALATSGGDEKEKAVAAVDDGGDXXXXXXXXXXXGGAARCALAMASATFLEEVMGMGG-FPRMKAMRCFSASLRCGRPRDAAGDYLAPSIVCARSNSSSS 642
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Thioredoxin-like fold |
| Ec32 ortholog | Ec-02_004220.1 |
| Exons | 4 |
| Model size | 716 |
| Cds size | 714 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8421.16588.1 >prot_S-dermatodea_contig8421.16588.1 ID=prot_S-dermatodea_contig8421.16588.1|Name=mRNA_S-dermatodea_contig8421.16588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
MPEGSEGRTPRDGAGGTGRVGGGAGRGLGDSQDMDPDEARALAETAQAEA
EILAAAAADLEAQRMRTSRIYCEACPGDGIVEFTANRDMRGGGDSWNGLV
TAVAAEYVQELPLGNVIGIEAVVVSDLPGNTGDWQLGVKASTGGSHEGGG
YGWGNAARCALLMAAATFLEEVLGMRNQFPRMKAMRCYSASLRCRPTAAD
KAKRKADNARNNTLQSGIGGVGAAERAACFIPQEPFRL back to topmRNA from alignment at S-dermatodea_contig8421:4390..7809- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8421.16588.1 ID=mRNA_S-dermatodea_contig8421.16588.1|Name=mRNA_S-dermatodea_contig8421.16588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3420bp|location=Sequence derived from alignment at S-dermatodea_contig8421:4390..7809- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCGAGGGCTCGGAAGGGAGGACCCCTCGAGATGGGGCGGGCGGCAC
CGGTCGTGTTGGCGGTGGTGCGGGGAGGGGGTTGGGAGACTCCCAAGATA
TGGACCCTGATGAGGCTCGCGCCTTGGCGGAGACGGCTCAGGCGGAGGCG
GAGATTTTGGCGGCCGCAGCAGCTGATTTGGAGGCCCAGCGAATGAGGGT
GAGGGAGGGCGTGATGTGGGTTGCCTGGGCGGCGGGGGGCATATATGTTG
AACGCATGTCGTATCCAGACGGACATGGATCAGGTGTCCCAACGACGCCG
GGACGGAGCGATACGCCGGGTTTTCGCCGGACAGGCCGCGTTTCACAAGG
ATGAAACCAGCTGCTATATTAGCCATCATCCGTGCGTTTGTGACACCAAC
CGATACGCCTTGGGTGCGGCTTCTTGCCACAAGACGGTGTGGATACCAGT
GTCCCATTCAATCATGTCAACATTGTTTTTTTTGGGGTGGGGGGGGGGGG
GGGCGTTCCTCCATACAAAAAGAGTGTAAAACACCAGAGTCTAAAACCCC
AGTTGATGGTATTTATGTTGCTTCCTTTGATGAGGATGTAGGAACTCGGC
AATCATGAGTGCAGGCTGCTACAAGTATACATAGGTCGCTTTGTAGGTCG
GTGAGGAATAGCTGTTGTGCTACTGGTATTAGTGTACGCTCGGTGCCGCT
CTTTTTGGCGAATCAGAGGCACCATGCACACAAAATCGGCGATACGATGT
TTCCCAGCTAAACCCCATTGCTATCCCACAAAAGGGCAGCTCTCGTGTCA
GATAAAACCCAAGAAAGACGGGTCTATAAAACTCGAAGCGCTACAAGAGC
ATACACAGCACACGACCCTTCTCGCAAACTCCCTAACCACACCTCGTAGT
CTCGCTTCAACATCACCCCCGCCGCCGGTCATTGTCCAGACCTCCCGGAT
ATACTGCGAGGCGTGCCCAGGCGACGGGATTGTGGAGTTCACGGCCAATC
GAGATATGCGAGGGGGAGGAGACTCGTGGAACGGGTTGGTCACCGCAGTA
GGTGAGCGCATCCCGCCGGATGGCCGGCCACGTATGATAAAAGTTTATTT
TATTTTATTTTTTATTTTATTTTTTGCACACGTATAGCCGATCGGCTTAA
TCCGACCCGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAAATAAC
TAATGACAATTCTACTTCTACTATGCACCGTACCGCCCCTGGTACTTACT
ATAAATATGGTACAAGAAATAAGAAATAGCACCCCAGATATAGAGAAAAA
CGCTTGAAGAGAACTCGGACTCAAACAATGACAAGTATACGCTTTTGTTT
TATTTTTTAATTGTTTACCCCTCGAAAATTGTCGACACGCTGTATAGGAT
AAGGAGCGGAGTTTTCCCAGAGAGACCGAAAGCCGCAGAGAAATGTATCC
CCGGGCGCGATTTTGTAGTCGACATTTATATCACACCTCTTAACATGATA
CCATCATCACATCATCACATCATCACACCATCGCACCATCACATCATCAC
ACCATCACATCATAATATCATAATATCATAACATCATAAATATCATAATT
CCATAGTATCATAACATCATAACCCGTTTGAAACCGACTCTGTTTTCGGG
GGCATCCGCCTGCACTACTGTATTAATACTGCTGTCTTCTTGCCAAACAA
CTGTAACGACCTGCCGCGGCTACCCTTGCCGCAGAGGTAGATAAGTGGTG
GTGGTGGTGGTGGTGGTGGTGGTGGTGCGTGGGTGATTAACTCACCCGTC
ACGGATTTCATATAAAGAAACAGAAGACAGAAAGTGTATGATACAATCCA
TGACTAGTCGGGACAGGACCAGGACCCGGGTGGAGTTTGTAAGAGTGGGT
GGCATGATTTTCACGGCCGCCCGAAAGAGAATATCGTTGCTTGTAGTATA
AACATGGCCCAGGAGACTCCCCCAAGCGCAATACTTTGCTCAGCAGAACG
CGCATTGTAACGGGCGCAAACGCGGATATTTGTTAATAGTTGTCTTGGCC
GGTATGATATGATCTGATATCCTTTGCGAACACCGCAGGAAACGGTTTGT
GCGGCCGCCGTTCTTGAACGAGGCGTCGTTTTTCAAACGAGGTGTAAATC
TTGGTGTCACGAGCTATGAATGCAGCCCCTCGCTCCCTCCAGCCCCTCGC
TCCCTGCATTGCGTGACGCGTGAATGTCACGCGGGGATGTGCATATCGAT
ATTTCGGCCCGATACGCCGCTCGCCTTCTATGATGATAGCGTTAAGCAGC
GTGGTCATGACGATAGCCCGGCAACAGGTAGATAGGTCGGCTTAACACAT
CCGCCTGGCAAGACGAGAAAAACACGACGCCTCCTTTAACCTCCCTCCCT
CCCCCAACCCCCCCCCCCCCTCCCCTTCTCCCTCCTTTCCCGTCGGTTTT
CCCTTAGCCGCGGAGTACGTTCAAGAGTTACCATTAGGGAATGTGATAGG
GATCGAGGCTGTCGTGGTTAGTGACTTGCCCGGTAACACAGGGGACTGGC
AGCTAGGGGTGAAGGCGTCTACTGGCGGCTCGCACGAGGGCGGCGGCTAC
GGTTGGGGGAACGCGGCGAGATGCGCGCTGCTGATGGCGGCGGCGACGTT
TTTGGAGGAGGTTTTGGGGATGAGGTGAGTCAGGAGATTGGGATGCCCCC
CCCCCCCGTGCGCGCGCGATTGGACGTGTTGTTGTTGATATACGTGTTCG
TTGGCTCGTTTTTCGGGCGTTTGGCCCTACGGACGTGGTTTTTGTTTTTT
AAACATGATGTGGGCGGTGTAAAGGTGGCTGAATGCGTAGCTCTATGTAT
GCATTGGTCGAGACCCCGTCGCAAGTGATTTGATACTTTCCGGATGAGAC
TGGCCGGCGGTGTGTTGATCGCGCGCCGTCCTATTTTAGGCTTTTTACGG
ATTTGATGCCAGGCGACAATCGACTAGTTTGAGCTCTGTCGGTTGAGGCG
GCTGCTTGTACGTGCGTGTGTCTTTTGCCTGTTTTCGGTCCGCTATGTAT
ATTGCGGGCTACAAAATGCATACCTGGTATAAGTACTAAATACCGTGTAG
GACACATGACACACGGGGATGTTAAGTAGAGAAACGCCCTCAGTACCACC
AATCAATCTCCGCGACTAAAAAAAGGCAAGTGTGACATGAAACCGTTAAA
AAAACAAAAAATAAAAAACAACAACAACAACAGGAACCAGTTCCCGCGGA
TGAAAGCGATGCGGTGCTACTCTGCCTCGCTGCGATGCCGCCCAACGGCG
GCCGACAAGGCCAAAAGGAAGGCCGACAATGCCAGAAATAACACCTTACA
AAGCGGCATCGGGGGCGTTGGTGCAGCTGAGAGAGCGGCCTGTTTCATCC
CTCAAGAGCCGTTTCGATTG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8421:4390..7809- >mRNA_S-dermatodea_contig8421.16588.1 ID=mRNA_S-dermatodea_contig8421.16588.1|Name=mRNA_S-dermatodea_contig8421.16588.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig8421:4390..7809- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCGAGGGCTCGGAAGGGAGGACCCCTCGAGATGGGGCGGGCGGCAC
CGGTCGTGTTGGCGGTGGTGCGGGGAGGGGGTTGGGAGACTCCCAAGATA
TGGACCCTGATGAGGCTCGCGCCTTGGCGGAGACGGCTCAGGCGGAGGCG
GAGATTTTGGCGGCCGCAGCAGCTGATTTGGAGGCCCAGCGAATGAGGAT
GCCCGAGGGCTCGGAAGGGAGGACCCCTCGAGATGGGGCGGGCGGCACCG
GTCGTGTTGGCGGTGGTGCGGGGAGGGGGTTGGGAGACTCCCAAGATATG
GACCCTGATGAGGCTCGCGCCTTGGCGGAGACGGCTCAGGCGGAGGCGGA
GATTTTGGCGGCCGCAGCAGCTGATTTGGAGGCCCAGCGAATGAGGACCT
CCCGGATATACTGCGAGGCGTGCCCAGGCGACGGGATTGTGGAGTTCACG
GCCAATCGAGATATGCGAGGGGGAGGAGACTCGTGGAACGGGTTGGTCAC
CGCAGTAGACCTCCCGGATATACTGCGAGGCGTGCCCAGGCGACGGGATT
GTGGAGTTCACGGCCAATCGAGATATGCGAGGGGGAGGAGACTCGTGGAA
CGGGTTGGTCACCGCAGTAGCCGCGGAGTACGTTCAAGAGTTACCATTAG
GGAATGTGATAGGGATCGAGGCTGTCGTGGTTAGTGACTTGCCCGGTAAC
ACAGGGGACTGGCAGCTAGGGGTGAAGGCGTCTACTGGCGGCTCGCACGA
GGGCGGCGGCTACGGTTGGGGGAACGCGGCGAGATGCGCGCTGCTGATGG
CGGCGGCGACGTTTTTGGAGGAGGTTTTGGGGATGAGCCGCGGAGTACGT
TCAAGAGTTACCATTAGGGAATGTGATAGGGATCGAGGCTGTCGTGGTTA
GTGACTTGCCCGGTAACACAGGGGACTGGCAGCTAGGGGTGAAGGCGTCT
ACTGGCGGCTCGCACGAGGGCGGCGGCTACGGTTGGGGGAACGCGGCGAG
ATGCGCGCTGCTGATGGCGGCGGCGACGTTTTTGGAGGAGGTTTTGGGGA
TGAGGAACCAGTTCCCGCGGATGAAAGCGATGCGGTGCTACTCTGCCTCG
CTGCGATGCCGCCCAACGGCGGCCGACAAGGCCAAAAGGAAGGCCGACAA
TGCCAGAAATAACACCTTACAAAGCGGCATCGGGGGCGTTGGTGCAGCTG
AGAGAGCGGCCTGTTTCATCCCTCAAGAGCCGTTTCGATTGGAACCAGTT
CCCGCGGATGAAAGCGATGCGGTGCTACTCTGCCTCGCTGCGATGCCGCC
CAACGGCGGCCGACAAGGCCAAAAGGAAGGCCGACAATGCCAGAAATAAC
ACCTTACAAAGCGGCATCGGGGGCGTTGGTGCAGCTGAGAGAGCGGCCTG
TTTCATCCCTCAAGAGCCGTTTCGATTG back to top
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