mRNA_S-dermatodea_contig84141.16583.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84141.16583.1
Unique NamemRNA_S-dermatodea_contig84141.16583.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84141.16583.1 vs. uniprot
Match: A0A8D9E291_9HEMI (Histone H4 transcription factor n=3 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D9E291_9HEMI)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-5
Identity = 25/89 (28.09%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:   34 VFKCDDIGCDYETLRNFDLMAHKVTMHSDERN--CACAYPGYDYASKLKKLLLPHLRMHGEDKPFVCDFEQCKFATAVYRTSHVFRKRG 294
            +FKC++  CD++T+ N+ L+AHK T    E+     C Y G DY+   K+ L  H++   E   + C     +++ +   + H+ +K  
Sbjct:  421 LFKCNE--CDFKTISNYQLVAHKRTHLPTEQRPKLYCDYAGCDYSCLCKRTLYDHVKSKHEGAKYACHLCSKEYSASTILSKHLKKKHN 507
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84141.16583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8D9E291_9HEMI1.570e-528.09Histone H4 transcription factor n=3 Tax=Cacopsylla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84141contigS-dermatodea_contig84141:272..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.434352-CDS-S-dermatodea_contig84141:271..6011622925341.434352-CDS-S-dermatodea_contig84141:271..601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84141 272..601 -
1694079867.936082-CDS-S-dermatodea_contig84141:271..6011694079867.936082-CDS-S-dermatodea_contig84141:271..601Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84141 272..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84141.16583.1prot_S-dermatodea_contig84141.16583.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84141 272..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84141.16583.1

>prot_S-dermatodea_contig84141.16583.1 ID=prot_S-dermatodea_contig84141.16583.1|Name=mRNA_S-dermatodea_contig84141.16583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
NTHERGHTRETVFKCDDIGCDYETLRNFDLMAHKVTMHSDERNCACAYPG
YDYASKLKKLLLPHLRMHGEDKPFVCDFEQCKFATAVYRTSHVFRKRGHY
EDKRYVCDED
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mRNA from alignment at S-dermatodea_contig84141:272..601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84141.16583.1 ID=mRNA_S-dermatodea_contig84141.16583.1|Name=mRNA_S-dermatodea_contig84141.16583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig84141:272..601- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATACACATGAACGGGGGCACACACGGGAGACAGTGTTCAAGTGTGATGA
CATCGGATGCGACTATGAGACTTTGAGAAACTTTGATCTAATGGCACACA
AGGTGACGATGCACAGCGACGAGAGGAACTGCGCATGCGCGTACCCGGGC
TATGACTACGCCAGCAAGCTGAAGAAGCTTTTGCTTCCGCACCTCCGAAT
GCACGGCGAAGACAAACCATTTGTCTGTGATTTTGAGCAGTGTAAATTTG
CAACTGCTGTGTACCGTACTTCTCATGTGTTCCGCAAGAGAGGTCACTAC
GAGGACAAGAGATACGTGTGTGATGAGGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig84141:272..601-

>mRNA_S-dermatodea_contig84141.16583.1 ID=mRNA_S-dermatodea_contig84141.16583.1|Name=mRNA_S-dermatodea_contig84141.16583.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig84141:272..601- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATACACATGAACGGGGGCACACACGGGAGACAGTGTTCAAGTGTGATGA
CATCGGATGCGACTATGAGACTTTGAGAAACTTTGATCTAATGGCACACA
AGGTGACGATGCACAGCGACGAGAGGAACTGCGCATGCGCGTACCCGGGC
TATGACTACGCCAGCAAGCTGAAGAAGCTTTTGCTTCCGCACCTCCGAAT
GCACGGCGAAGACAAACCATTTGTCTGTGATTTTGAGCAGTGTAAATTTG
CAACTGCTGTGTACCGTACTTCTCATGTGTTCCGCAAGAGAGGTCACTAC
GAGGACAAGAGATACGTGTGTGATGAGGATAATACACATGAACGGGGGCA
CACACGGGAGACAGTGTTCAAGTGTGATGACATCGGATGCGACTATGAGA
CTTTGAGAAACTTTGATCTAATGGCACACAAGGTGACGATGCACAGCGAC
GAGAGGAACTGCGCATGCGCGTACCCGGGCTATGACTACGCCAGCAAGCT
GAAGAAGCTTTTGCTTCCGCACCTCCGAATGCACGGCGAAGACAAACCAT
TTGTCTGTGATTTTGAGCAGTGTAAATTTGCAACTGCTGTGTACCGTACT
TCTCATGTGTTCCGCAAGAGAGGTCACTACGAGGACAAGAGATACGTGTG
TGATGAGGAT
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