mRNA_S-dermatodea_contig84107.16582.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84107.16582.1
Unique NamemRNA_S-dermatodea_contig84107.16582.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: D8LHZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ7_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 3.490e-73
Identity = 118/119 (99.16%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCV+EV
Sbjct:  801 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVEEV 919
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A6H5JZ18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ18_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 7.160e-72
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:   22 GRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            GRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCV+EV
Sbjct:  367 GRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVEEV 480
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A835YTF2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 230 bits (587), Expect = 5.560e-68
Identity = 110/119 (92.44%), Postives = 114/119 (95.80%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            RSGRAGRTQPGKCFRLFTAWSF HELEDNTVPEIQRTNMGNVVL+LKSLGI+DLLHF+FMDPPPPE LIRALEQLYALGALNDRGELTK GRRMAEFPLDPM+SK VIAAEKYGCV EV
Sbjct:  773 RSGRAGRTQPGKCFRLFTAWSFAHELEDNTVPEIQRTNMGNVVLMLKSLGIHDLLHFDFMDPPPPEALIRALEQLYALGALNDRGELTKQGRRMAEFPLDPMMSKAVIAAEKYGCVAEV 891
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A7S3J8K1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3J8K1_9SPIT)

HSP 1 Score: 210 bits (534), Expect = 3.060e-67
Identity = 96/119 (80.67%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            R+GRAGR  PGKCFRL+T+WS+Q+EL+ NT+PEIQRTN+GNVVL+LK LGINDL+HF+F+DPPP ETLIRALEQLYALGALND GELTKLGRRMAEFPLDPMLSK VI AEKY CVD++
Sbjct:   41 RAGRAGRVSPGKCFRLYTSWSYQNELDPNTIPEIQRTNLGNVVLMLKGLGINDLIHFDFLDPPPIETLIRALEQLYALGALNDEGELTKLGRRMAEFPLDPMLSKMVIQAEKYKCVDQI 159
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: B8CEI8_THAPS (HA2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEI8_THAPS)

HSP 1 Score: 209 bits (531), Expect = 3.130e-66
Identity = 101/119 (84.87%), Postives = 110/119 (92.44%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            R+GRAGRTQPGKCFRLFTA+SFQHEL+ NT PEI RTNM NVVL+LKSLGI++LL F+FMD PPPETLIRALEQLYALGALNDRGELTK+GRRMAEFPLDPMLSKTVI +EKY CV EV
Sbjct:   11 RAGRAGRTQPGKCFRLFTAYSFQHELDPNTTPEILRTNMCNVVLMLKSLGIDNLLAFDFMDAPPPETLIRALEQLYALGALNDRGELTKMGRRMAEFPLDPMLSKTVIVSEKYKCVSEV 129
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A6U3GL79_9CHLO (RNA helicase n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A6U3GL79_9CHLO)

HSP 1 Score: 216 bits (551), Expect = 2.340e-65
Identity = 100/121 (82.64%), Postives = 115/121 (95.04%), Query Frame = 1 
Query:    1 MYRSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            + R+GRAGRTQPGKCFRL+TAWSFQ+EL+ NTVPEIQRTN+GNVVL+LKSLGINDL+HF+FMD PP ETL+RALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKT++A++KY C +EV
Sbjct:  262 LQRAGRAGRTQPGKCFRLYTAWSFQNELDPNTVPEIQRTNLGNVVLMLKSLGINDLMHFDFMDAPPAETLLRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTLVASDKYKCSEEV 382
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A7S2T8F9_9CHLO (RNA helicase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8F9_9CHLO)

HSP 1 Score: 213 bits (541), Expect = 5.360e-65
Identity = 97/121 (80.17%), Postives = 114/121 (94.21%), Query Frame = 1 
Query:    1 MYRSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            M R+GRAGRT PG+CFRL+TAWSFQHELEDNT+PEIQRTN+GNVVL+LKSLGINDL++F+FMDPPP ETL+RALEQLYALGALNDRGELTKLGR+MAEFPLDPML+K ++A++ YG  +EV
Sbjct:  139 MQRTGRAGRTGPGQCFRLYTAWSFQHELEDNTIPEIQRTNLGNVVLMLKSLGINDLMNFDFMDPPPAETLLRALEQLYALGALNDRGELTKLGRKMAEFPLDPMLAKAMVASDAYGVSEEV 259
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A1Y1XN87_9FUNG (Asp-Glu-Ala-His box polypeptide 16, isoform CRA_f n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XN87_9FUNG)

HSP 1 Score: 211 bits (538), Expect = 8.240e-65
Identity = 97/119 (81.51%), Postives = 112/119 (94.12%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            R+GRAGR  PG CFRL+TAW++Q+ELE+NT+PEIQRTN+G VVL+LKSLGINDL++F+FMDPPP ETLIRALEQLYALGALNDRGELTKLGRRMAEFP DPMLSKT+IA+EKYGC DE+
Sbjct:  123 RAGRAGRVGPGMCFRLYTAWAYQNELEENTIPEIQRTNLGTVVLMLKSLGINDLINFDFMDPPPAETLIRALEQLYALGALNDRGELTKLGRRMAEFPTDPMLSKTLIASEKYGCSDEI 241
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A1Y1HSI3_KLENI (RNA helicase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSI3_KLENI)

HSP 1 Score: 220 bits (560), Expect = 2.510e-64
Identity = 100/118 (84.75%), Postives = 115/118 (97.46%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDE 360
            R+GRAGRT PGKCFRL+TAWS+QHEL+DNTVPEIQRTN+GNVVL+LKSLGINDLL+F+FMDPPP ETL++ALEQLYALGALNDRGELTK+GRRMAEFP+DPML+K +IA+EKYGCVDE
Sbjct:  741 RAGRAGRTSPGKCFRLYTAWSYQHELDDNTVPEIQRTNLGNVVLMLKSLGINDLLNFDFMDPPPAETLLKALEQLYALGALNDRGELTKMGRRMAEFPVDPMLAKMLIASEKYGCVDE 858
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BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Match: A0A7S0PHI1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHI1_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.680e-64
Identity = 98/119 (82.35%), Postives = 109/119 (91.60%), Query Frame = 1 
Query:    7 RSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKSLGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMLSKTVIAAEKYGCVDEV 363
            RSGRAGRTQPGKCFRL+TAWSFQHELE NT+PEI RTNM NVVL+LKSLGI+DL+ F+FMD PP +TLIRALEQLYALGALND GELTKLGRRMAEFPL+PMLSK+V+A+EKY C  EV
Sbjct:   62 RSGRAGRTQPGKCFRLYTAWSFQHELEPNTIPEILRTNMNNVVLMLKSLGIDDLIRFDFMDAPPADTLIRALEQLYALGALNDHGELTKLGRRMAEFPLEPMLSKSVLASEKYKCTSEV 180
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84107.16582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHZ7_ECTSI3.490e-7399.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ18_9PHAE7.160e-7299.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YTF2_9STRA5.560e-6892.44P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3J8K1_9SPIT3.060e-6780.67Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
B8CEI8_THAPS3.130e-6684.87HA2 domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6U3GL79_9CHLO2.340e-6582.64RNA helicase n=1 Tax=Mantoniella antarctica TaxID=... [more]
A0A7S2T8F9_9CHLO5.360e-6580.17RNA helicase n=1 Tax=Chloropicon roscoffensis TaxI... [more]
A0A1Y1XN87_9FUNG8.240e-6581.51Asp-Glu-Ala-His box polypeptide 16, isoform CRA_f ... [more]
A0A1Y1HSI3_KLENI2.510e-6484.75RNA helicase n=1 Tax=Klebsormidium nitens TaxID=10... [more]
A0A7S0PHI1_9STRA2.680e-6482.35Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84107contigS-dermatodea_contig84107:103..630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.4e-62
Seed eggNOG ortholog2880.D8LHZ7
Preferred namecdc28
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0923@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.3867786-CDS-S-dermatodea_contig84107:102..2371622925341.3867786-CDS-S-dermatodea_contig84107:102..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84107 103..237 -
1694079867.9033053-CDS-S-dermatodea_contig84107:102..2371694079867.9033053-CDS-S-dermatodea_contig84107:102..237Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84107 103..237 -
1622925341.3983476-CDS-S-dermatodea_contig84107:402..6301622925341.3983476-CDS-S-dermatodea_contig84107:402..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84107 403..630 -
1694079867.919495-CDS-S-dermatodea_contig84107:402..6301694079867.919495-CDS-S-dermatodea_contig84107:402..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84107 403..630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84107.16582.1prot_S-dermatodea_contig84107.16582.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84107 103..630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84107.16582.1

>prot_S-dermatodea_contig84107.16582.1 ID=prot_S-dermatodea_contig84107.16582.1|Name=mRNA_S-dermatodea_contig84107.16582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
MYRSGRAGRTQPGKCFRLFTAWSFQHELEDNTVPEIQRTNMGNVVLLLKS
LGINDLLHFEFMDPPPPETLIRALEQLYALGALNDRGELTKLGRRMAEFP
LDPMLSKTVIAAEKYGCVDEV
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mRNA from alignment at S-dermatodea_contig84107:103..630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84107.16582.1 ID=mRNA_S-dermatodea_contig84107.16582.1|Name=mRNA_S-dermatodea_contig84107.16582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig84107:103..630- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACAGATCGGGAAGGGCGGGGCGGACTCAGCCGGGAAAGTGCTTTCG
GCTGTTTACGGCGTGGTCCTTCCAGCACGAGCTCGAGGACAACACCGTGC
CAGAGATACAGCGTACGAACATGGGCAACGTCGTCCTCCTGCTCAAGAGC
CTGGGGATCAATGATCTCCTGCACTTCGAGTTCATGGATCCCCCTCCCCC
GGAGACTCTCATTCGGGCTTTGGAACAGGTGACTTGGGTGGATCGGATCG
GATCGGATAGGGTGGCGATTTTTTTATTTTCTCGATCGTTACCCCTCCCC
CTCCCCCTCCCCCGCGCGCCCTCTAATCTTCGCTACCTTTGCGCGAACTT
GTTTCCCCCCCGTGTGGTCCCCTATCCATTTTTTCCCCCACAGCTGTACG
CGCTTGGAGCTCTGAACGACAGAGGAGAGCTGACGAAGCTCGGGAGGCGC
ATGGCAGAGTTCCCCCTTGACCCCATGCTGAGCAAGACAGTCATCGCGGC
AGAGAAGTACGGCTGCGTGGACGAGGTA
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Coding sequence (CDS) from alignment at S-dermatodea_contig84107:103..630-

>mRNA_S-dermatodea_contig84107.16582.1 ID=mRNA_S-dermatodea_contig84107.16582.1|Name=mRNA_S-dermatodea_contig84107.16582.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig84107:103..630- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACAGATCGGGAAGGGCGGGGCGGACTCAGCCGGGAAAGTGCTTTCG
GCTGTTTACGGCGTGGTCCTTCCAGCACGAGCTCGAGGACAACACCGTGC
CAGAGATACAGCGTACGAACATGGGCAACGTCGTCCTCCTGCTCAAGAGC
CTGGGGATCAATGATCTCCTGCACTTCGAGTTCATGGATCCCCCTCCCCC
GGAGACTCTCATTCGGGCTTTGGAACAGATGTACAGATCGGGAAGGGCGG
GGCGGACTCAGCCGGGAAAGTGCTTTCGGCTGTTTACGGCGTGGTCCTTC
CAGCACGAGCTCGAGGACAACACCGTGCCAGAGATACAGCGTACGAACAT
GGGCAACGTCGTCCTCCTGCTCAAGAGCCTGGGGATCAATGATCTCCTGC
ACTTCGAGTTCATGGATCCCCCTCCCCCGGAGACTCTCATTCGGGCTTTG
GAACAGCTGTACGCGCTTGGAGCTCTGAACGACAGAGGAGAGCTGACGAA
GCTCGGGAGGCGCATGGCAGAGTTCCCCCTTGACCCCATGCTGAGCAAGA
CAGTCATCGCGGCAGAGAAGTACGGCTGCGTGGACGAGGTACTGTACGCG
CTTGGAGCTCTGAACGACAGAGGAGAGCTGACGAAGCTCGGGAGGCGCAT
GGCAGAGTTCCCCCTTGACCCCATGCTGAGCAAGACAGTCATCGCGGCAG
AGAAGTACGGCTGCGTGGACGAGGTA
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