mRNA_S-dermatodea_contig84086.16579.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84086.16579.1
Unique NamemRNA_S-dermatodea_contig84086.16579.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: D8LEK3_ECTSI (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEK3_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.560e-34
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            EGIPAMVADS+ NGDKKMSYYREHTHA+ASGVD GR+M ELFAKDGGTCRGAGGSMH+YDKDTHFQ
Sbjct:  145 EGIPAMVADSLGNGDKKMSYYREHTHALASGVDAGRVMGELFAKDGGTCRGAGGSMHVYDKDTHFQ 210
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BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S3HUG5_9SPIT (Hypothetical protein (Fragment) n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3HUG5_9SPIT)

HSP 1 Score: 112 bits (280), Expect = 2.310e-30
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA++AD+I  GDKK SYYREHTHA+ASGV P  IMAELF KD GTCRG GGSMHIYDK+T+FQ
Sbjct:   74 EAIPALIADAIKKGDKKFSYYREHTHALASGVSPDAIMAELFGKDTGTCRGTGGSMHIYDKETNFQ 139
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BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S4M2W8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2W8_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 5.370e-30
Identity = 54/66 (81.82%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA VAD+I  GD K SYYREHTHA+AS VDPG IMAELFAKD GTCRG GGSMHIYDKDTHFQ
Sbjct:   75 ETIPAFVADTIKKGDIKYSYYREHTHALASKVDPGAIMAELFAKDTGTCRGTGGSMHIYDKDTHFQ 140
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A6T7SKE6_9EUKA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A6T7SKE6_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 6.630e-28
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPAM+AD I+  D K SYYREHTHA+ASG+DPG IMAELFAKD GTCRG GGSMHIYD DTHFQ
Sbjct:  150 ESIPAMLADFINKDDIKYSYYREHTHALASGIDPGAIMAELFAKDTGTCRGTGGSMHIYDVDTHFQ 215
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S2V5P9_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.640e-28
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA+VA+SI  GD K SYYR+HTHA+ASGVD G +MAELF KDGGTCRGAGGSMHIYDK+T+FQ
Sbjct:  172 EAIPALVANSIKKGDTKYSYYRDHTHALASGVDGGAVMAELFGKDGGTCRGAGGSMHIYDKETNFQ 237
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: K0S6J8_THAOC (E1_dh domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6J8_THAOC)

HSP 1 Score: 107 bits (268), Expect = 7.180e-28
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA+V  +I NGDKK SYYREHTHAIASGVDPG +MAELF K+ G+C+GAGGSMHI+DK  +FQ
Sbjct:   78 ESIPALVDYAIKNGDKKYSYYREHTHAIASGVDPGEVMAELFMKETGSCKGAGGSMHIFDKSAYFQ 143
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BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S3XF84_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XF84_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 8.510e-28
Identity = 47/66 (71.21%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA++ADSI   D K SYYR+H HAIASGVDPG +MAEL+ KDGGTCRG GGSMHI+D  T+FQ
Sbjct:   41 ESIPALLADSIRKDDLKHSYYRDHCHAIASGVDPGAVMAELYGKDGGTCRGTGGSMHIHDPATNFQ 106
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S4UV86_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UV86_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.240e-27
Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IP +V  +I NGDKK SYYREHTHAIASGVDPG +MAELF K+GGTC+GAGGSMHI+DK+T+FQ
Sbjct:  142 ESIPGLVDYAIKNGDKKYSYYREHTHAIASGVDPGAVMAELFMKEGGTCKGAGGSMHIFDKETYFQ 207
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7R9W5X5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5X5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.430e-27
Identity = 49/66 (74.24%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IPA+V  +I  GDKK SYYREHTHAIASGVD G +MAELF K+GGTC+GAGGSMHI+DK+T+FQ
Sbjct:  159 ESIPALVDYAIKKGDKKYSYYREHTHAIASGVDSGAVMAELFMKEGGTCKGAGGSMHIFDKETYFQ 224
[Close]
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Match: A0A7S2KFC8_9STRA (Pyruvate dehydrogenase (acetyl-transferring) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFC8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.300e-27
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 EGIPAMVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGSMHIYDKDTHFQ 198
            E IP MVA +I NGDKK SYYREHTHA+ASGV PG +MAELF K+GGTC+GAGGSMHI+DK T+FQ
Sbjct:  137 ESIPGMVASAIKNGDKKYSYYREHTHALASGVAPGPVMAELFMKEGGTCKGAGGSMHIFDKPTYFQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84086.16579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK3_ECTSI1.560e-3489.39Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7S3HUG5_9SPIT2.310e-3075.76Hypothetical protein (Fragment) n=2 Tax=Choreotric... [more]
A0A7S4M2W8_9EUKA5.370e-3081.82Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
A0A6T7SKE6_9EUKA6.630e-2878.79Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
A0A7S2V5P9_9STRA6.640e-2877.27Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]
K0S6J8_THAOC7.180e-2872.73E1_dh domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3XF84_9CHLO8.510e-2871.21Hypothetical protein (Fragment) n=1 Tax=Picocystis... [more]
A0A7S4UV86_9STRA1.240e-2775.76Pyruvate dehydrogenase (acetyl-transferring) n=2 T... [more]
A0A7R9W5X5_9STRA1.430e-2774.24Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S2KFC8_9STRA2.300e-2775.76Pyruvate dehydrogenase (acetyl-transferring) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84086contigS-dermatodea_contig84086:412..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2e-25
Seed eggNOG ortholog2880.D8LEK3
Preferred nameodpA
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.pyruvate dehydrogenase (acetyl-transferring) activity
EggNOG OGsCOG0022@1,COG0462@1,KOG0225@2759,KOG0524@2759
EC1.2.4.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionpyruvate dehydrogenase
Ec32 orthologEc-23_002710.1
Exons1
Model size198
Cds size183
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.1146793-UTR-S-dermatodea_contig84086:411..4261622925341.1146793-UTR-S-dermatodea_contig84086:411..426Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84086 412..426 +
1694079867.7043583-UTR-S-dermatodea_contig84086:411..4261694079867.7043583-UTR-S-dermatodea_contig84086:411..426Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig84086 412..426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.128358-CDS-S-dermatodea_contig84086:426..6091622925341.128358-CDS-S-dermatodea_contig84086:426..609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84086 427..609 +
1694079867.7243152-CDS-S-dermatodea_contig84086:426..6091694079867.7243152-CDS-S-dermatodea_contig84086:426..609Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84086 427..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84086.16579.1prot_S-dermatodea_contig84086.16579.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84086 427..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84086.16579.1

>prot_S-dermatodea_contig84086.16579.1 ID=prot_S-dermatodea_contig84086.16579.1|Name=mRNA_S-dermatodea_contig84086.16579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
MVADSIHNGDKKMSYYREHTHAIASGVDPGRIMAELFAKDGGTCRGAGGS
MHIYDKDTHFQ
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mRNA from alignment at S-dermatodea_contig84086:412..609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84086.16579.1 ID=mRNA_S-dermatodea_contig84086.16579.1|Name=mRNA_S-dermatodea_contig84086.16579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at S-dermatodea_contig84086:412..609+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGTATTCCCGCCATGGTGGCGGACAGCATCCACAACGGAGACAAGAA
GATGAGCTACTACCGCGAGCACACCCACGCCATCGCAAGCGGCGTTGACC
CCGGGCGCATCATGGCAGAGCTGTTCGCGAAGGACGGTGGCACCTGCCGC
GGCGCGGGGGGTTCCATGCACATCTACGATAAGGACACCCACTTTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84086:412..609+

>mRNA_S-dermatodea_contig84086.16579.1 ID=mRNA_S-dermatodea_contig84086.16579.1|Name=mRNA_S-dermatodea_contig84086.16579.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig84086:412..609+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGGCGGACAGCATCCACAACGGAGACAAGAAGATGAGCTACTACCG
CGAGCACACCCACGCCATCGCAAGCGGCGTTGACCCCGGGCGCATCATGG
CAGAGCTGTTCGCGAAGGACGGTGGCACCTGCCGCGGCGCGGGGGGTTCC
ATGCACATCTACGATAAGGACACCCACTTTCAGATGGTGGCGGACAGCAT
CCACAACGGAGACAAGAAGATGAGCTACTACCGCGAGCACACCCACGCCA
TCGCAAGCGGCGTTGACCCCGGGCGCATCATGGCAGAGCTGTTCGCGAAG
GACGGTGGCACCTGCCGCGGCGCGGGGGGTTCCATGCACATCTACGATAA
GGACACCCACTTTCAG
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