mRNA_S-dermatodea_contig8408.16578.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8408.16578.1
Unique NamemRNA_S-dermatodea_contig8408.16578.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8408.16578.1 vs. uniprot
Match: D7FJN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.980e-13
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:   12 NDIGGATGAMTRYALGGDGYVDPVDFENVFEV----------VNGTAQITYVPMITAFLNALDEGVARLTDRGVTGRILLGNLFS 236
            N++     A+TRY++GG+GY DPV F+ VFEV           +G    T+ PMI   L A DEG+ RL D GVTGRILL N+ S
Sbjct:  184 NELNRVVEAITRYSIGGEGYEDPVAFDKVFEVNATTGFPVLDESGLPVPTFAPMIEEVLGAWDEGIGRLIDAGVTGRILLANVGS 268
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8408.16578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJN0_ECTSI2.980e-1347.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8408contigS-dermatodea_contig8408:5701..6216 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8408.16578.1prot_S-dermatodea_contig8408.16578.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8408 5701..6214 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.0546904-CDS-S-dermatodea_contig8408:5700..58591622925341.0546904-CDS-S-dermatodea_contig8408:5700..5859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8408 5701..5859 -
1694079867.6666205-CDS-S-dermatodea_contig8408:5700..58591694079867.6666205-CDS-S-dermatodea_contig8408:5700..5859Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8408 5701..5859 -
1622925341.069993-CDS-S-dermatodea_contig8408:6067..62141622925341.069993-CDS-S-dermatodea_contig8408:6067..6214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8408 6068..6214 -
1694079867.677346-CDS-S-dermatodea_contig8408:6067..62141694079867.677346-CDS-S-dermatodea_contig8408:6067..6214Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8408 6068..6214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.082433-UTR-S-dermatodea_contig8408:6214..62161622925341.082433-UTR-S-dermatodea_contig8408:6214..6216Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8408 6215..6216 -
1694079867.6876702-UTR-S-dermatodea_contig8408:6214..62161694079867.6876702-UTR-S-dermatodea_contig8408:6214..6216Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8408 6215..6216 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8408.16578.1

>prot_S-dermatodea_contig8408.16578.1 ID=prot_S-dermatodea_contig8408.16578.1|Name=mRNA_S-dermatodea_contig8408.16578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MVGNDIGGATGAMTRYALGGDGYVDPVDFENVFEVVNGTAQITYVPMITA
FLNALDEGVARLTDRGVTGRILLGNLFSLIGFPVSVPTFGAKAGLICLLG
K*
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mRNA from alignment at S-dermatodea_contig8408:5701..6216-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8408.16578.1 ID=mRNA_S-dermatodea_contig8408.16578.1|Name=mRNA_S-dermatodea_contig8408.16578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig8408:5701..6216- (Saccorhiza dermatodea SderLu1190fm monoicous)
CGATGGTAGGCAACGACATTGGAGGTGCAACAGGTGCCATGACGCGCTAC
GCACTAGGGGGAGACGGCTACGTGGACCCTGTCGACTTCGAAAACGTTTT
TGAAGTTGTCAATGGGACAGCGCAGATAACATATGTACCCATGATCACGG
TGAGCCGAGAGTCATCGCGTTTGAATTGGCGGGGAATGCACGCGCTCCGG
TAACCTAAGCGTCGAGAGGAGCCATGCTCACATTGAGGCTTGTTCCGCGA
AAGTCCACTCGAGTATGTGGAAAAACGGAAGCTGAACATCGTCATGGTGT
ATGGTGTCTTTCCGCAAGCTGCAAACCTCCTCACATGGCTCCTCTACGGC
TGCGCAGGCGTTTCTGAACGCACTTGACGAGGGTGTGGCCAGGCTTACAG
ACCGCGGTGTGACTGGGAGGATTCTGCTTGGGAACCTCTTTTCACTTATC
GGCTTCCCCGTGAGTGTGCCGACCTTCGGCGCCAAAGCTGGGCTAATATG
TTTGCTCGGGAAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8408:5701..6216-

>mRNA_S-dermatodea_contig8408.16578.1 ID=mRNA_S-dermatodea_contig8408.16578.1|Name=mRNA_S-dermatodea_contig8408.16578.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig8408:5701..6216- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTAGGCAACGACATTGGAGGTGCAACAGGTGCCATGACGCGCTACGC
ACTAGGGGGAGACGGCTACGTGGACCCTGTCGACTTCGAAAACGTTTTTG
AAGTTGTCAATGGGACAGCGCAGATAACATATGTACCCATGATCACGATG
GTAGGCAACGACATTGGAGGTGCAACAGGTGCCATGACGCGCTACGCACT
AGGGGGAGACGGCTACGTGGACCCTGTCGACTTCGAAAACGTTTTTGAAG
TTGTCAATGGGACAGCGCAGATAACATATGTACCCATGATCACGGCGTTT
CTGAACGCACTTGACGAGGGTGTGGCCAGGCTTACAGACCGCGGTGTGAC
TGGGAGGATTCTGCTTGGGAACCTCTTTTCACTTATCGGCTTCCCCGTGA
GTGTGCCGACCTTCGGCGCCAAAGCTGGGCTAATATGTTTGCTCGGGAAA
TAAGCGTTTCTGAACGCACTTGACGAGGGTGTGGCCAGGCTTACAGACCG
CGGTGTGACTGGGAGGATTCTGCTTGGGAACCTCTTTTCACTTATCGGCT
TCCCCGTGAGTGTGCCGACCTTCGGCGCCAAAGCTGGGCTAATATGTTTG
CTCGGGAAATAA
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