mRNA_S-dermatodea_contig84.16571.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84.16571.1
Unique NamemRNA_S-dermatodea_contig84.16571.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: D7FT21_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT21_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 7.890e-28
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQL+IYEEAVGDK
Sbjct:  364 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLVIYEEAVGDK 419
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A835YUR1_9STRA (PCI domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUR1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.240e-20
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            +PFSCVE+ H+A+LI LP+DKVE KLSQMILD+KL GILDQG+GQLIIYE++  DK
Sbjct:  367 EPFSCVEIAHIADLIHLPIDKVERKLSQMILDRKLQGILDQGRGQLIIYEDSASDK 422
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A5D6XUI6_9STRA (PCI domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUI6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.540e-19
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVE++HVA+LIKLP+ ++ELKLSQMILD K  GILDQGKGQLI+YE A+ DK
Sbjct:  364 QPFSCVEIEHVAKLIKLPLAQIELKLSQMILDHKFHGILDQGKGQLIVYESALEDK 419
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: K3W9Y5_GLOUD (PCI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9Y5_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 2.190e-19
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVE+DHVA+LIKLP+ ++ELKLSQMILD K  GILDQGKGQLI+YE  + DK
Sbjct:  374 QPFSCVEIDHVAKLIKLPLAQIELKLSQMILDHKFHGILDQGKGQLIVYESPMEDK 429
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A662WKF1_9STRA (PCI domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKF1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.410e-18
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVE++HVA+LIKLP+ ++ELKLSQMILD K  GILDQGKGQLI+Y+    DK
Sbjct:  360 QPFSCVEIEHVAKLIKLPLPQIELKLSQMILDHKFHGILDQGKGQLIVYDSPTDDK 415
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: D0MSF9_PHYIT (26S proteasome non-ATPase regulatory subunit 11, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MSF9_PHYIT)

HSP 1 Score: 85.1 bits (209), Expect = 3.130e-18
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCV++ HVA+LIKLP+ ++ELKLSQMILD K  GILDQGKGQLI+Y+  V DK
Sbjct:  271 QPFSCVDIAHVAKLIKLPLPQIELKLSQMILDHKFHGILDQGKGQLIVYDSPVEDK 326
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A8J9TBQ1_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TBQ1_PHATR)

HSP 1 Score: 81.6 bits (200), Expect = 3.220e-18
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            +P+SCVEL H+A +I+LPV  VE KLSQMILD K LGILDQGKGQL++YEE+  D+
Sbjct:   75 EPYSCVELSHIAAMIELPVATVERKLSQMILDGKFLGILDQGKGQLVVYEESDPDE 130
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A024GEM8_9STRA (PCI domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GEM8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.980e-18
Identity = 39/56 (69.64%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVE++HVA+LI LP  ++E+KLSQMILD K  GILDQGKGQLI+Y++ V DK
Sbjct:  362 QPFSCVEIEHVAKLINLPSKQIEIKLSQMILDHKFHGILDQGKGQLIVYDDPVEDK 417
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A7S2B1Q2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1Q2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 7.320e-18
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QPFSCVELD +++LI LP++KVE KLSQMILDKK  G LDQG+GQLII+E+   DK
Sbjct:  381 QPFSCVELDRISQLINLPIEKVEKKLSQMILDKKFKGTLDQGRGQLIIFEDEADDK 436
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BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Match: A0A067CQT0_SAPPC (PCI domain-containing protein n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CQT0_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 1.320e-17
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYEEAVGDK 168
            QP+SCVE+ HVA LIKLP+ +VE KLSQMILD K  GILDQG+GQLI+YE A  DK
Sbjct:  362 QPYSCVEISHVATLIKLPLPQVETKLSQMILDHKFHGILDQGRGQLIVYESATEDK 417
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84.16571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT21_ECTSI7.890e-2898.21PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YUR1_9STRA8.240e-2073.21PCI domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A5D6XUI6_9STRA1.540e-1975.00PCI domain-containing protein n=1 Tax=Pythium bras... [more]
K3W9Y5_GLOUD2.190e-1975.00PCI domain-containing protein n=1 Tax=Globisporang... [more]
A0A662WKF1_9STRA1.410e-1871.43PCI domain-containing protein n=2 Tax=Nothophytoph... [more]
D0MSF9_PHYIT3.130e-1871.4326S proteasome non-ATPase regulatory subunit 11, p... [more]
A0A8J9TBQ1_PHATR3.220e-1867.86Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A024GEM8_9STRA6.980e-1869.64PCI domain-containing protein n=2 Tax=Albugo TaxID... [more]
A0A7S2B1Q2_9STRA7.320e-1869.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A067CQT0_SAPPC1.320e-1771.43PCI domain-containing protein n=5 Tax=Saprolegniac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84contigS-dermatodea_contig84:44161..44328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.3e-22
Seed eggNOG ortholog2880.D7FT21
Preferred namePSMD11
KEGG koko:K03036
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006972,GO:0007088,GO:0007275,GO:0007346,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010259,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030054,GO:0030071,GO:0030141,GO:0030154,GO:0030163,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034622,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046686,GO:0046903,GO:0048518,GO:0048522,GO:0048856,GO:0048863,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0060205,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.proteasome assembly
EggNOG OGsCOG5159@1,KOG1463@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925340.6195343-CDS-S-dermatodea_contig84:44160..443281622925340.6195343-CDS-S-dermatodea_contig84:44160..44328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84 44161..44328 -
1694079867.3795843-CDS-S-dermatodea_contig84:44160..443281694079867.3795843-CDS-S-dermatodea_contig84:44160..44328Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84 44161..44328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84.16571.1prot_S-dermatodea_contig84.16571.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84 44161..44328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84.16571.1

>prot_S-dermatodea_contig84.16571.1 ID=prot_S-dermatodea_contig84.16571.1|Name=mRNA_S-dermatodea_contig84.16571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
QPFSCVELDHVAELIKLPVDKVELKLSQMILDKKLLGILDQGKGQLIIYE
EAVGDK
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mRNA from alignment at S-dermatodea_contig84:44161..44328-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84.16571.1 ID=mRNA_S-dermatodea_contig84.16571.1|Name=mRNA_S-dermatodea_contig84.16571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig84:44161..44328- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGTTCAGCTGCGTAGAGCTTGACCATGTGGCGGAGCTGATCAAGCT
GCCGGTTGATAAGGTTGAGCTGAAGCTGAGCCAGATGATCTTGGACAAGA
AGCTGCTGGGTATCCTGGATCAGGGCAAGGGTCAGCTGATCATCTACGAG
GAGGCGGTGGGGGACAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig84:44161..44328-

>mRNA_S-dermatodea_contig84.16571.1 ID=mRNA_S-dermatodea_contig84.16571.1|Name=mRNA_S-dermatodea_contig84.16571.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig84:44161..44328- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCCGTTCAGCTGCGTAGAGCTTGACCATGTGGCGGAGCTGATCAAGCT
GCCGGTTGATAAGGTTGAGCTGAAGCTGAGCCAGATGATCTTGGACAAGA
AGCTGCTGGGTATCCTGGATCAGGGCAAGGGTCAGCTGATCATCTACGAG
GAGGCGGTGGGGGACAAGCAGCCGTTCAGCTGCGTAGAGCTTGACCATGT
GGCGGAGCTGATCAAGCTGCCGGTTGATAAGGTTGAGCTGAAGCTGAGCC
AGATGATCTTGGACAAGAAGCTGCTGGGTATCCTGGATCAGGGCAAGGGT
CAGCTGATCATCTACGAGGAGGCGGTGGGGGACAAG
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