mRNA_S-dermatodea_contig83961.16567.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83961.16567.1
Unique NamemRNA_S-dermatodea_contig83961.16567.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A6H5L1Y5_9PHAE (MGS-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1Y5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 4.370e-23
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDATNAWQLVKEL+AATGLPAAASFKHVSPAGAAVAVPLSE EIAAYEV
Sbjct:  258 GYINLLDATNAWQLVKELKAATGLPAAASFKHVSPAGAAVAVPLSEEEIAAYEV 311
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S3V8E5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V8E5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.080e-19
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDA NAWQLVKELR ATGL +AASFKHVSPAGAAVAVPLS+ E AAYEV
Sbjct:  257 GYINLLDAANAWQLVKELREATGLASAASFKHVSPAGAAVAVPLSDVECAAYEV 310
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S2U861_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U861_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-19
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEVR 165
            GYINLLDA NAWQLVKELR ATGL AA+SFKHVSPAGAAVAVPL++ E AAYE++
Sbjct:  231 GYINLLDAANAWQLVKELREATGLAAASSFKHVSPAGAAVAVPLTDVECAAYEIK 285
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S3PC47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PC47_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.490e-19
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDA NAWQLV ELR ATGL +A+SFKHVSPAGAAVAVPL++ E  AYEV
Sbjct:   60 GYINLLDAANAWQLVVELRQATGLASASSFKHVSPAGAAVAVPLTDVEYQAYEV 113
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7R9WGI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGI4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.720e-19
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDA NAWQLVKEL+ ATGL AA+SFKHVSPAGAAVAVPLS+ E  AYEV
Sbjct:  215 GYINLLDAANAWQLVKELKEATGLAAASSFKHVSPAGAAVAVPLSDVECRAYEV 268
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S4JYR4_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JYR4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.750e-19
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEVRR 168
            GYINLLDA NAWQLVKELR ATGL AA+SFKHVSPAGAAVAVPL++ E AAYEV +
Sbjct:  257 GYINLLDAANAWQLVKELREATGLAAASSFKHVSPAGAAVAVPLTDDECAAYEVTK 312
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S1YVN1_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YVN1_TRICV)

HSP 1 Score: 88.2 bits (217), Expect = 5.070e-19
Identity = 47/54 (87.04%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDA NAWQLVKELR ATGL AAASFKHVSPAGAAVAVPL E E  AYEV
Sbjct:  258 GYINLLDAANAWQLVKELREATGLAAAASFKHVSPAGAAVAVPLGETERQAYEV 311
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A6U4AD18_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U4AD18_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.130e-19
Identity = 46/56 (82.14%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEVRR 168
            GYINLLDA NAWQLVKELR ATGL AA+SFKHVSPAGAAVAVPL + E  AYEV R
Sbjct:  259 GYINLLDAANAWQLVKELREATGLAAASSFKHVSPAGAAVAVPLKDVECEAYEVTR 314
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A7S4AG84_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AG84_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.150e-19
Identity = 46/54 (85.19%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYEV 162
            GYINLLDA NAWQLVKELR ATGL AAASFKHVSPAGAAVAVPL++ E  AYEV
Sbjct:  335 GYINLLDAANAWQLVKELRQATGLAAAASFKHVSPAGAAVAVPLTDVECLAYEV 388
[Close]
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Match: A0A836CED7_9STRA (Putative bifunctional purine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.000e-19
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIAAYE 159
            GYINL+DA NAWQLVKEL AATGLPAAASFKH SPAGAAVAVPLSE E A YE
Sbjct:  260 GYINLMDAVNAWQLVKELGAATGLPAAASFKHCSPAGAAVAVPLSEEEKAVYE 312
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83961.16567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Y5_9PHAE4.370e-2396.30MGS-like domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3V8E5_9STRA1.080e-1987.04Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2U861_9STRA2.000e-1981.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3PC47_9STRA2.490e-1979.63Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7R9WGI4_9STRA2.720e-1983.33Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4JYR4_9STRA3.750e-1982.14Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1YVN1_TRICV5.070e-1987.04Hypothetical protein (Fragment) n=2 Tax=Trieres ch... [more]
A0A6U4AD18_9STRA5.130e-1982.14Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4AG84_9STRA5.150e-1985.19Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
A0A836CED7_9STRA7.000e-1986.79Putative bifunctional purine synthesis protein n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83961contigS-dermatodea_contig83961:106..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.5e-19
Seed eggNOG ortholog2880.D8LKS8
Preferred nameATIC
KEGG rclassRC00026,RC00263,RC00456
KEGG koko:K00602,ko:K06943
KEGG ReactionR01127,R04560
KEGG Pathwayko00230,ko00670,ko01100,ko01110,ko01130,ko01523,ko03008,map00230,map00670,map01100,map01110,map01130,map01523,map03008
KEGG ModuleM00048
GOsGO:0000003,GO:0003006,GO:0003360,GO:0003674,GO:0003824,GO:0003937,GO:0004643,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006575,GO:0006725,GO:0006732,GO:0006753,GO:0006760,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009108,GO:0009116,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009235,GO:0009259,GO:0009260,GO:0009396,GO:0009611,GO:0009653,GO:0009987,GO:0010035,GO:0015980,GO:0016020,GO:0016053,GO:0016740,GO:0016741,GO:0016742,GO:0016787,GO:0016810,GO:0016814,GO:0017144,GO:0018130,GO:0019238,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0021537,GO:0021543,GO:0021549,GO:0021987,GO:0022037,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0030435,GO:0030437,GO:0030900,GO:0030902,GO:0031099,GO:0031100,GO:0032501,GO:0032502,GO:0032505,GO:0033013,GO:0034293,GO:0034641,GO:0034654,GO:0042060,GO:0042221,GO:0042398,GO:0042558,GO:0042559,GO:0042802,GO:0042803,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043934,GO:0043935,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045333,GO:0046040,GO:0046390,GO:0046394,GO:0046452,GO:0046483,GO:0046653,GO:0046654,GO:0046983,GO:0048468,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051186,GO:0051188,GO:0051321,GO:0051704,GO:0055086,GO:0055114,GO:0060322,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1903046
EggNOG free text desc.IMP cyclohydrolase activity
EggNOG OGsCOG0138@1,KOG2555@2759
EC2.1.2.3,3.5.4.10
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.8405378-CDS-S-dermatodea_contig83961:105..2761622925339.8405378-CDS-S-dermatodea_contig83961:105..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83961 106..276 +
1694079866.59864-CDS-S-dermatodea_contig83961:105..2761694079866.59864-CDS-S-dermatodea_contig83961:105..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83961 106..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83961.16567.1prot_S-dermatodea_contig83961.16567.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83961 106..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83961.16567.1

>prot_S-dermatodea_contig83961.16567.1 ID=prot_S-dermatodea_contig83961.16567.1|Name=mRNA_S-dermatodea_contig83961.16567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=57bp
GYINLLDATNAWQLVKELRAATGLPAAASFKHVSPAGAAVAVPLSEAEIA
AYEVRRR
back to top

mRNA from alignment at S-dermatodea_contig83961:106..276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83961.16567.1 ID=mRNA_S-dermatodea_contig83961.16567.1|Name=mRNA_S-dermatodea_contig83961.16567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at S-dermatodea_contig83961:106..276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTACATCAACCTGCTCGACGCGACAAACGCGTGGCAGCTGGTGAAGGA
GCTGCGCGCGGCTACGGGGCTGCCCGCCGCTGCGTCGTTCAAGCACGTCA
GCCCCGCCGGTGCGGCCGTCGCGGTTCCGCTGAGCGAGGCGGAGATCGCT
GCCTACGAGGTCCGTCGTCGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig83961:106..276+

>mRNA_S-dermatodea_contig83961.16567.1 ID=mRNA_S-dermatodea_contig83961.16567.1|Name=mRNA_S-dermatodea_contig83961.16567.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at S-dermatodea_contig83961:106..276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCTACATCAACCTGCTCGACGCGACAAACGCGTGGCAGCTGGTGAAGGA
GCTGCGCGCGGCTACGGGGCTGCCCGCCGCTGCGTCGTTCAAGCACGTCA
GCCCCGCCGGTGCGGCCGTCGCGGTTCCGCTGAGCGAGGCGGAGATCGCT
GCCTACGAGGTCCGTCGTCGGGGCTACATCAACCTGCTCGACGCGACAAA
CGCGTGGCAGCTGGTGAAGGAGCTGCGCGCGGCTACGGGGCTGCCCGCCG
CTGCGTCGTTCAAGCACGTCAGCCCCGCCGGTGCGGCCGTCGCGGTTCCG
CTGAGCGAGGCGGAGATCGCTGCCTACGAGGTCCGTCGTCGG
back to top