mRNA_S-dermatodea_contig8393.16566.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8393.16566.1
Unique NamemRNA_S-dermatodea_contig8393.16566.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8393.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8393contigS-dermatodea_contig8393:606..1282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size677
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.7869773-CDS-S-dermatodea_contig8393:605..9651622925339.7869773-CDS-S-dermatodea_contig8393:605..965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8393 606..965 +
1694079866.565967-CDS-S-dermatodea_contig8393:605..9651694079866.565967-CDS-S-dermatodea_contig8393:605..965Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8393 606..965 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.804867-UTR-S-dermatodea_contig8393:965..12821622925339.804867-UTR-S-dermatodea_contig8393:965..1282Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8393 966..1282 +
1694079866.5811772-UTR-S-dermatodea_contig8393:965..12821694079866.5811772-UTR-S-dermatodea_contig8393:965..1282Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8393 966..1282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8393.16566.1prot_S-dermatodea_contig8393.16566.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8393 606..965 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8393.16566.1

>prot_S-dermatodea_contig8393.16566.1 ID=prot_S-dermatodea_contig8393.16566.1|Name=mRNA_S-dermatodea_contig8393.16566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
RRRRETRTSKIISAINRTPSQAGFSSPRLSRTVLLRSYKYTPRTLGASRE
QFTDDINWQEEQHACPRARGGLLCPPFQWRDSYDTAAPRFISKSNSRGLT
HRPSHASSRSAWVLVARVG*
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mRNA from alignment at S-dermatodea_contig8393:606..1282+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8393.16566.1 ID=mRNA_S-dermatodea_contig8393.16566.1|Name=mRNA_S-dermatodea_contig8393.16566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at S-dermatodea_contig8393:606..1282+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAGAAGAAGAGAGACGAGAACGTCCAAAATTATTTCAGCAATCAATCG
CACTCCTTCTCAAGCAGGCTTTTCGTCGCCACGTCTCTCACGTACAGTAT
TACTTAGAAGCTATAAGTACACACCGAGAACCTTGGGGGCTTCGCGTGAA
CAATTTACTGACGACATCAACTGGCAAGAAGAGCAGCACGCATGCCCGCG
CGCACGAGGGGGTTTGCTTTGCCCTCCCTTTCAATGGCGCGACAGCTACG
ATACTGCCGCGCCGAGGTTCATCAGCAAGAGTAACAGCCGGGGATTGACA
CACCGACCATCGCACGCATCGTCGCGCTCTGCCTGGGTGCTAGTCGCGCG
CGTTGGCTAAAGGTCGCCGCTCGCACACAGAAACACACCCTAATTCCTGC
TGTAACTTCCTGTCCGTGCGTGGGCGAAACGCTCACCATCCCAGTCGTCC
AACGTCTCAGGACGGCCGCTTTCATTTGCGACACGGCTTTGCACGAACAT
TTACATACATACCAAGGGGTACGGGAAAGCAGCCGCGTCGTCTGTAAAAA
AGAAGAAGAAACTAAACATGCCGAACCTCTCAGCCGGCTCGACCAGTCCA
ACAAAGAAAAATAACTAGTACTGTAGTACTCTTAGGAGCCACCTGATCGG
GCGAGGAACGAAAATAGCCACCCCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8393:606..1282+

>mRNA_S-dermatodea_contig8393.16566.1 ID=mRNA_S-dermatodea_contig8393.16566.1|Name=mRNA_S-dermatodea_contig8393.16566.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig8393:606..1282+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAGAAGAAGAGAGACGAGAACGTCCAAAATTATTTCAGCAATCAATCG
CACTCCTTCTCAAGCAGGCTTTTCGTCGCCACGTCTCTCACGTACAGTAT
TACTTAGAAGCTATAAGTACACACCGAGAACCTTGGGGGCTTCGCGTGAA
CAATTTACTGACGACATCAACTGGCAAGAAGAGCAGCACGCATGCCCGCG
CGCACGAGGGGGTTTGCTTTGCCCTCCCTTTCAATGGCGCGACAGCTACG
ATACTGCCGCGCCGAGGTTCATCAGCAAGAGTAACAGCCGGGGATTGACA
CACCGACCATCGCACGCATCGTCGCGCTCTGCCTGGGTGCTAGTCGCGCG
CGTTGGCTAAAGAAGAAGAAGAGAGACGAGAACGTCCAAAATTATTTCAG
CAATCAATCGCACTCCTTCTCAAGCAGGCTTTTCGTCGCCACGTCTCTCA
CGTACAGTATTACTTAGAAGCTATAAGTACACACCGAGAACCTTGGGGGC
TTCGCGTGAACAATTTACTGACGACATCAACTGGCAAGAAGAGCAGCACG
CATGCCCGCGCGCACGAGGGGGTTTGCTTTGCCCTCCCTTTCAATGGCGC
GACAGCTACGATACTGCCGCGCCGAGGTTCATCAGCAAGAGTAACAGCCG
GGGATTGACACACCGACCATCGCACGCATCGTCGCGCTCTGCCTGGGTGC
TAGTCGCGCGCGTTGGCTAA
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