mRNA_S-dermatodea_contig83915.16564.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83915.16564.1
Unique NamemRNA_S-dermatodea_contig83915.16564.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A6H5KY43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY43_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.010e-12
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL LFNYP FFR ++PTDN G P    P+D+A LDI+RDRARG+
Sbjct:  443 CGALVLFNYPKFFRKLSPTDNAGTPDTTAPVDLAVLDIHRDRARGI 488
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A1X6NXY9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXY9_PORUM)

HSP 1 Score: 63.2 bits (152), Expect = 2.040e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CG L+LFNYP   R++ PTD+DG P    P+D+A LDIYRDR RG+
Sbjct:  497 CGTLSLFNYPAALRTLVPTDDDGSPRVGRPVDLAALDIYRDRERGV 542
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A059A3A9_EUCGR (Uncharacterized protein n=7 Tax=Myrtoideae TaxID=1699513 RepID=A0A059A3A9_EUCGR)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL+L+NYP++ R++ P D DG   PD  IDMA L+IYRDR RG+
Sbjct:  397 CGALSLWNYPSWMRNLVPQDVDGKDRPDS-IDMAALEIYRDRERGI 441
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A218XCR2_PUNGR (alpha-dioxygenase 2 isoform X1 n=5 Tax=Punica granatum TaxID=22663 RepID=A0A218XCR2_PUNGR)

HSP 1 Score: 57.0 bits (136), Expect = 3.050e-8
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL+L+NYPT+ R + P D +G    D P+DMA LDIYRDR RG+
Sbjct:  447 CGALSLWNYPTWMRKLIPQDVNGEDRSD-PVDMAALDIYRDRERGV 491
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: UPI000D62A392 (alpha-dioxygenase 1-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62A392)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL L+NYPT+ R++ P + DG   PD  ID+A+LDIYRDR R +
Sbjct:  422 CGALELYNYPTWLRNIVPQNLDGTDRPDH-IDLASLDIYRDRERNV 466
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A371EH87_MUCPR (Alpha-dioxygenase 2 (Fragment) n=2 Tax=indigoferoid/millettioid clade TaxID=2233855 RepID=A0A371EH87_MUCPR)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGA+AL+NYPT+ R++   D +G   PD P+DMAT+++YRDR RG+
Sbjct:  462 CGAVALWNYPTWLRNLIAHDINGEERPD-PVDMATMEVYRDRERGV 506
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A103YHB5_CYNCS (Heme peroxidase n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YHB5_CYNCS)

HSP 1 Score: 56.2 bits (134), Expect = 5.700e-8
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL L+NYPT+ R++ P + DG   PD  ID+A+LDIYRDR R +
Sbjct:  113 CGALELYNYPTWLRNIVPQNLDGTDRPDH-IDLASLDIYRDRERNV 157
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A8J4RJW1_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RJW1_9ROSI)

HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL L+NYP++ R++   D +G   PD P+DMATL+IYRDR RG+
Sbjct:  266 CGALTLWNYPSWMRNLVAHDINGEDRPD-PVDMATLEIYRDRERGV 310
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A7N2MT48_QUELO (Uncharacterized protein n=9 Tax=Quercus TaxID=3511 RepID=A0A7N2MT48_QUELO)

HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL L+NYP++ R++   D +G   PD P+DMATL+IYRDR RG+
Sbjct:  441 CGALTLWNYPSWMRNLVAHDINGEDRPD-PVDMATLEIYRDRERGV 485
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BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Match: A0A2N9GKF0_FAGSY (XPGI domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GKF0_FAGSY)

HSP 1 Score: 55.8 bits (133), Expect = 7.790e-8
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM 138
            CGAL L+NYP++ R++   D +G   PD P+DMATL+IYRDR RG+
Sbjct:  194 CGALTLWNYPSWMRNLVAHDINGEDRPD-PVDMATLEIYRDRERGV 238
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83915.16564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY43_9PHAE1.010e-1265.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1X6NXY9_PORUM2.040e-1058.70Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A059A3A9_EUCGR2.230e-858.70Uncharacterized protein n=7 Tax=Myrtoideae TaxID=1... [more]
A0A218XCR2_PUNGR3.050e-858.70alpha-dioxygenase 2 isoform X1 n=5 Tax=Punica gran... [more]
UPI000D62A3925.700e-856.52alpha-dioxygenase 1-like n=1 Tax=Cynara cardunculu... [more]
A0A371EH87_MUCPR5.700e-854.35Alpha-dioxygenase 2 (Fragment) n=2 Tax=indigoferoi... [more]
A0A103YHB5_CYNCS5.700e-856.52Heme peroxidase n=1 Tax=Cynara cardunculus var. sc... [more]
A0A8J4RJW1_9ROSI7.790e-856.52Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A7N2MT48_QUELO7.790e-856.52Uncharacterized protein n=9 Tax=Quercus TaxID=3511... [more]
A0A2N9GKF0_FAGSY7.790e-856.52XPGI domain-containing protein n=1 Tax=Fagus sylva... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83915contigS-dermatodea_contig83915:139..276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.6503515-CDS-S-dermatodea_contig83915:138..2761622925339.6503515-CDS-S-dermatodea_contig83915:138..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83915 139..276 +
1694079866.4639935-CDS-S-dermatodea_contig83915:138..2761694079866.4639935-CDS-S-dermatodea_contig83915:138..276Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83915 139..276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83915.16564.1prot_S-dermatodea_contig83915.16564.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83915 139..276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83915.16564.1

>prot_S-dermatodea_contig83915.16564.1 ID=prot_S-dermatodea_contig83915.16564.1|Name=mRNA_S-dermatodea_contig83915.16564.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=46bp
CGALALFNYPTFFRSVAPTDNDGVPMPDCPIDMATLDIYRDRARGM
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mRNA from alignment at S-dermatodea_contig83915:139..276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83915.16564.1 ID=mRNA_S-dermatodea_contig83915.16564.1|Name=mRNA_S-dermatodea_contig83915.16564.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at S-dermatodea_contig83915:139..276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGGCGCCCTAGCGCTGTTCAACTACCCCACTTTCTTCCGCTCTGTGGC
ACCTACTGATAACGATGGCGTTCCGATGCCCGACTGCCCGATCGACATGG
CCACGCTCGACATCTACAGGGACCGCGCCCGAGGTATG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83915:139..276+

>mRNA_S-dermatodea_contig83915.16564.1 ID=mRNA_S-dermatodea_contig83915.16564.1|Name=mRNA_S-dermatodea_contig83915.16564.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig83915:139..276+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGGCGCCCTAGCGCTGTTCAACTACCCCACTTTCTTCCGCTCTGTGGC
ACCTACTGATAACGATGGCGTTCCGATGCCCGACTGCCCGATCGACATGG
CCACGCTCGACATCTACAGGGACCGCGCCCGAGGTATGTGCGGCGCCCTA
GCGCTGTTCAACTACCCCACTTTCTTCCGCTCTGTGGCACCTACTGATAA
CGATGGCGTTCCGATGCCCGACTGCCCGATCGACATGGCCACGCTCGACA
TCTACAGGGACCGCGCCCGAGGTATG
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