mRNA_S-dermatodea_contig83894.16561.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83894.16561.1
Unique NamemRNA_S-dermatodea_contig83894.16561.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: Q2TU97_DICDH (NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU97_DICDH)

HSP 1 Score: 172 bits (435), Expect = 2.180e-50
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVEN 276
            M+LK KK KK L+HFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIE+KTY+QALPYFDRLDYVSMM QEHTY+LAVEN
Sbjct:    1 MILKNKKQKKNLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIESKTYLQALPYFDRLDYVSMMCQEHTYALAVEN 92          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A4D6E538_9PHAE (NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E538_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.210e-49
Identity = 84/92 (91.30%), Postives = 86/92 (93.48%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVEN 276
            M LK K+  K+LKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTY QALPYFDRLDYVSMM QEHTYSLAVEN
Sbjct:    1 MSLKKKEFNKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYSLAVEN 92          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: NDUS2_PYLLI (NADH-ubiquinone oxidoreductase 49 kDa subunit n=72 Tax=Phaeophyceae TaxID=2870 RepID=NDUS2_PYLLI)

HSP 1 Score: 168 bits (426), Expect = 4.780e-49
Identity = 82/92 (89.13%), Postives = 86/92 (93.48%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVEN 276
            M LK K+  K+LKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTY QALPYFDRLDYVSMM QEHTY+L+VEN
Sbjct:    1 MALKKKEFNKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDYVSMMCQEHTYALSVEN 92          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A4Y5T7J7_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7J7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.340e-48
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            M+LK K+ +K L+HFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTY+QALPYFDRLDYVSMM QEHTYSL VE
Sbjct:    1 MILKQKQKQKSLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYLQALPYFDRLDYVSMMCQEHTYSLGVE 91          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A8F0K0U0_9PHAE (NADH dehydrogenase subunit 7 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K0U0_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.740e-48
Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            M LK KK +K L+HFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMM QEHT++LAVE
Sbjct:    1 MPLKRKKPEKSLQHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMCQEHTFALAVE 91          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A0U1WNP6_SARFS (NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxID=3009 RepID=A0A0U1WNP6_SARFS)

HSP 1 Score: 164 bits (415), Expect = 2.070e-47
Identity = 80/91 (87.91%), Postives = 86/91 (94.51%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            MV K K+ +K+LKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIE+KT++QALPYFDRLDYVSMM QEHTY LAVE
Sbjct:    1 MVKKKKEFEKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIESKTFVQALPYFDRLDYVSMMCQEHTYVLAVE 91          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A140F2Z4_9STRA (NADH dehydrogenase subunit 7 n=9 Tax=Monodopsidaceae TaxID=425072 RepID=A0A140F2Z4_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.280e-46
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            MVLK     K++K+FTINFGPQHPAAHGVLRL+LELNGE+V+RADPHIGLLHRGTEKLIE KTYIQALPYFDRLDYVSMM+QEHTYSLAVE
Sbjct:    1 MVLKKTTLSKKIKNFTINFGPQHPAAHGVLRLVLELNGEIVERADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMAQEHTYSLAVE 91          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A140F2R7_9STRA (NADH dehydrogenase subunit 7 n=1 Tax=Trachydiscus minutus TaxID=1032745 RepID=A0A140F2R7_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.360e-46
Identity = 75/91 (82.42%), Postives = 85/91 (93.41%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            MVLK     K++K+FT+NFGPQHPAAHGVLR++LELNGE+++RADPHIGLLHRGTEKLIE KTYIQALPYFDRLDYVSMM+QEHTYSLAVE
Sbjct:    1 MVLKKTSLSKKIKNFTVNFGPQHPAAHGVLRMVLELNGEIIERADPHIGLLHRGTEKLIENKTYIQALPYFDRLDYVSMMAQEHTYSLAVE 91          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: UPI001BC9B822 (hypothetical protein n=1 Tax=Candidatus Protochlamydia amoebophila TaxID=362787 RepID=UPI001BC9B822)

HSP 1 Score: 154 bits (390), Expect = 8.500e-46
Identity = 75/88 (85.23%), Postives = 84/88 (95.45%), Query Frame = 1
Query:   13 LKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVEN 276
            LKKS  R+K+FT+NFGPQHPAAHGVLRLILEL+GE++++ADPHIGLLHRGTEKLIE KTYIQALPYFDRLDYVSMMSQEH YS+AVEN
Sbjct:   10 LKKS--RIKNFTMNFGPQHPAAHGVLRLILELDGELIRKADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVSMMSQEHAYSIAVEN 95          
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Match: A0A8E7MIM3_9STRA (NADH dehydrogenase subunit 7 n=1 Tax=Attheya longicornis TaxID=451786 RepID=A0A8E7MIM3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.770e-45
Identity = 76/91 (83.52%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVE 273
            M LK K   K++K+FTINFGPQHPAAHGVLRL+LELNGEVV+RADPHIGLLHRGTEKLIE KTY+QALPYFDRLDYVSMM+QEHTY LA+E
Sbjct:    1 MTLKKKNLIKKIKNFTINFGPQHPAAHGVLRLVLELNGEVVERADPHIGLLHRGTEKLIEYKTYVQALPYFDRLDYVSMMAQEHTYCLAIE 91          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83894.16561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TU97_DICDH2.180e-5090.22NADH dehydrogenase subunit 7 n=1 Tax=Dictyota dich... [more]
A0A4D6E538_9PHAE1.210e-4991.30NADH dehydrogenase subunit 7 n=2 Tax=Laminariaceae... [more]
NDUS2_PYLLI4.780e-4989.13NADH-ubiquinone oxidoreductase 49 kDa subunit n=72... [more]
A0A4Y5T7J7_9PHAE1.340e-4889.01NADH dehydrogenase subunit 7 n=1 Tax=Dictyopteris ... [more]
A0A8F0K0U0_9PHAE3.740e-4890.11NADH dehydrogenase subunit 7 n=1 Tax=Analipus japo... [more]
A0A0U1WNP6_SARFS2.070e-4787.91NADH dehydrogenase subunit 7 n=22 Tax=Fucales TaxI... [more]
A0A140F2Z4_9STRA2.280e-4685.71NADH dehydrogenase subunit 7 n=9 Tax=Monodopsidace... [more]
A0A140F2R7_9STRA6.360e-4682.42NADH dehydrogenase subunit 7 n=1 Tax=Trachydiscus ... [more]
UPI001BC9B8228.500e-4685.23hypothetical protein n=1 Tax=Candidatus Protochlam... [more]
A0A8E7MIM3_9STRA1.770e-4583.52NADH dehydrogenase subunit 7 n=1 Tax=Attheya longi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83894contigS-dermatodea_contig83894:3..278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score158.3
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog70448.Q0P3H6
KEGG rclassRC00061
KEGG koko:K03935
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
EggNOG free text desc.Belongs to the complex I 49 kDa subunit family
EggNOG OGs34JA3@3041,37S7T@33090,COG0649@1,KOG2870@2759
EC1.6.5.3,1.6.99.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.5125546-CDS-S-dermatodea_contig83894:2..2781622925339.5125546-CDS-S-dermatodea_contig83894:2..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83894 3..278 -
1694079866.38891-CDS-S-dermatodea_contig83894:2..2781694079866.38891-CDS-S-dermatodea_contig83894:2..278Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83894 3..278 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83894.16561.1prot_S-dermatodea_contig83894.16561.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83894 3..278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83894.16561.1

>prot_S-dermatodea_contig83894.16561.1 ID=prot_S-dermatodea_contig83894.16561.1|Name=mRNA_S-dermatodea_contig83894.16561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
MVLKLKKSKKRLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGL
LHRGTEKLIEAKTYIQALPYFDRLDYVSMMSQEHTYSLAVEN
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mRNA from alignment at S-dermatodea_contig83894:3..278-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83894.16561.1 ID=mRNA_S-dermatodea_contig83894.16561.1|Name=mRNA_S-dermatodea_contig83894.16561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at S-dermatodea_contig83894:3..278- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTTTAAAACTAAAGAAAAGTAAAAAAAGGTTAAAACATTTCACGAT AAATTTTGGTCCCCAGCATCCTGCAGCGCATGGAGTTCTTAGGCTTATAC TAGAATTAAATGGCGAAGTTGTTCAGCGTGCCGATCCTCATATAGGCCTT TTGCATAGAGGTACGGAAAAACTAATTGAAGCAAAAACTTATATACAAGC TTTGCCTTATTTCGATCGCTTAGATTATGTGTCGATGATGTCTCAAGAGC ATACATATTCTTTAGCTGTTGAAAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig83894:3..278-

>mRNA_S-dermatodea_contig83894.16561.1 ID=mRNA_S-dermatodea_contig83894.16561.1|Name=mRNA_S-dermatodea_contig83894.16561.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig83894:3..278- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTTTAAAACTAAAGAAAAGTAAAAAAAGGTTAAAACATTTCACGAT
AAATTTTGGTCCCCAGCATCCTGCAGCGCATGGAGTTCTTAGGCTTATAC
TAGAATTAAATGGCGAAGTTGTTCAGCGTGCCGATCCTCATATAGGCCTT
TTGCATAGAGGTACGGAAAAACTAATTGAAGCAAAAACTTATATACAAGC
TTTGCCTTATTTCGATCGCTTAGATTATGTGTCGATGATGTCTCAAGAGC
ATACATATTCTTTAGCTGTTGAAAACATGGTTTTAAAACTAAAGAAAAGT
AAAAAAAGGTTAAAACATTTCACGATAAATTTTGGTCCCCAGCATCCTGC
AGCGCATGGAGTTCTTAGGCTTATACTAGAATTAAATGGCGAAGTTGTTC
AGCGTGCCGATCCTCATATAGGCCTTTTGCATAGAGGTACGGAAAAACTA
ATTGAAGCAAAAACTTATATACAAGCTTTGCCTTATTTCGATCGCTTAGA
TTATGTGTCGATGATGTCTCAAGAGCATACATATTCTTTAGCTGTTGAAA
AC
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