prot_S-dermatodea_contig83856.16557.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig83856.16557.1
Unique Nameprot_S-dermatodea_contig83856.16557.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length61
Homology
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A6H5KNE5_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.360e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFA 59
            R ALYR F +LKHASGGFRMHDDGEVD RGTYT IA+ASLLNMLTPEL++GVA+FA
Sbjct:  166 RSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFA 221          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.280e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFA 59
            R ALYR F +LKHASGGFRMHDDGEVD RGTYT IA+ASLLNMLTPEL++GVA+FA
Sbjct:  181 RSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFA 236          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.800e-21
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 61
            R ALYRFF ++KH SGGFRMH+DGEVDVRGTYT I+IA+LLN+LTPEL +GVAE+ ++
Sbjct:  164 RSALYRFFTSIKHPSGGFRMHEDGEVDVRGTYTVISIAALLNILTPELVQGVAEYVLA 221          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S2S187_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S187_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.170e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0
Query:    4 RRALYRFFATLKH-ASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 61
            R A+Y +F +LK  ASGGFRMHDDGEVDVRGTYT IAI+SLLN+LTPELTKGVAEFA++
Sbjct:  190 RVAMYSWFLSLKDPASGGFRMHDDGEVDVRGTYTVIAISSLLNILTPELTKGVAEFALA 248          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S4ECU6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECU6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.150e-19
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 61
            R ALY+F  ++K AS GFRMHDDGEVDVRGTYTAIA+A+L N+LTP+L +GVAE+A S
Sbjct:  157 RPALYQFLLSMKDASNGFRMHDDGEVDVRGTYTAIAVAALTNVLTPQLVEGVAEYAAS 214          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.000e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 61
            R ALY++F   KH SGGF MHDDGEVDVRGTYT I+IAS+LNMLTP+L  GV E+ +S
Sbjct:  171 RPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLS 228          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: F0Y5G6_AURAN (Protein farnesyltransferase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G6_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 2.070e-17
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAV 60
            R+ LY F  ++K  SGGFRMHDDGEVDVRGTYTA+A+A+L N+LTPEL +G A +A+
Sbjct:  110 RKGLYAFLLSMKDPSGGFRMHDDGEVDVRGTYTALAVAALFNVLTPELAEGAAAYAL 166          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A2R5G6E4_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6E4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.510e-17
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEF 58
            R A+YRFF +LKH SGGFR+  DGE+D RG YT +A+AS+LN+LTPELT+G A+F
Sbjct:  171 RDAIYRFFMSLKHPSGGFRVQPDGEIDTRGLYTVLAVASILNILTPELTEGCAKF 225          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S2KZX0_9DINO (Protein farnesyltransferase subunit beta n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KZX0_9DINO)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-15
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEF 58
            RR +Y+F   +KH  GGFRMHD+GE D+RGTY AIA+AS+L++LT EL +GV E+
Sbjct:  134 RRTMYQFLMRMKHPEGGFRMHDEGETDMRGTYCAIAVASMLHILTDELAEGVPEY 188          
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S3M5V6_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5V6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.320e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 0
Query:    4 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAV 60
            R A+Y +F +LK  SGGF +H DGEVD RGTYT IA+A +LN+LT ELT+GVA+F V
Sbjct:  123 RPAMYGYFLSLKSPSGGFMIHTDGEVDSRGTYTVIAVARVLNILTKELTEGVADFVV 179          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE5_9PHAE8.360e-2482.14Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI2.280e-2282.14Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A836CMB6_9STRA9.800e-2172.41Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A7S2S187_9STRA8.170e-2077.97Protein farnesyltransferase subunit beta n=1 Tax=R... [more]
A0A7S4ECU6_9STRA6.150e-1970.69Protein farnesyltransferase subunit beta n=1 Tax=P... [more]
W7TZN2_9STRA7.000e-1868.97Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
F0Y5G6_AURAN2.070e-1764.91Protein farnesyltransferase subunit beta n=1 Tax=A... [more]
A0A2R5G6E4_9STRA7.510e-1765.45Protein farnesyltransferase subunit beta n=1 Tax=H... [more]
A0A7S2KZX0_9DINO4.480e-1560.00Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A7S3M5V6_9STRA9.320e-1563.16Protein farnesyltransferase subunit beta n=2 Tax=S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 4..45
e-value: 5.4E-8
score: 32.4
NoneNo IPR availableGENE3D1.50.10.20coord: 1..61
e-value: 4.0E-18
score: 67.4
NoneNo IPR availablePANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 4..60
IPR026872Protein farnesyltransferase subunit betaPANTHERPTHR11774:SF6CHURC1-FNTB READTHROUGH-RELATEDcoord: 4..60
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 3..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83856contigS-dermatodea_contig83856:61..243 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83856.16557.1mRNA_S-dermatodea_contig83856.16557.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig83856 61..243 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig83856.16557.1 ID=prot_S-dermatodea_contig83856.16557.1|Name=mRNA_S-dermatodea_contig83856.16557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
TAYRRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPE
LTKGVAEFAVS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001330PFTB_repeat
IPR026872FTB
IPR008930Terpenoid_cyclase/PrenylTrfase