mRNA_S-dermatodea_contig83856.16557.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83856.16557.1
Unique NamemRNA_S-dermatodea_contig83856.16557.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A6H5KNE5_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE5_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.360e-24
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFA 177
            R ALYR F +LKHASGGFRMHDDGEVD RGTYT IA+ASLLNMLTPEL++GVA+FA
Sbjct:  166 RSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFA 221
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.280e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFA 177
            R ALYR F +LKHASGGFRMHDDGEVD RGTYT IA+ASLLNMLTPEL++GVA+FA
Sbjct:  181 RSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFA 236
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 9.800e-21
Identity = 42/58 (72.41%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 183
            R ALYRFF ++KH SGGFRMH+DGEVDVRGTYT I+IA+LLN+LTPEL +GVAE+ ++
Sbjct:  164 RSALYRFFTSIKHPSGGFRMHEDGEVDVRGTYTVISIAALLNILTPELVQGVAEYVLA 221
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S2S187_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S187_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.170e-20
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   10 RRALYRFFATLKH-ASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 183
            R A+Y +F +LK  ASGGFRMHDDGEVDVRGTYT IAI+SLLN+LTPELTKGVAEFA++
Sbjct:  190 RVAMYSWFLSLKDPASGGFRMHDDGEVDVRGTYTVIAISSLLNILTPELTKGVAEFALA 248
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S4ECU6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECU6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 6.150e-19
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 183
            R ALY+F  ++K AS GFRMHDDGEVDVRGTYTAIA+A+L N+LTP+L +GVAE+A S
Sbjct:  157 RPALYQFLLSMKDASNGFRMHDDGEVDVRGTYTAIAVAALTNVLTPQLVEGVAEYAAS 214
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.000e-18
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAVS 183
            R ALY++F   KH SGGF MHDDGEVDVRGTYT I+IAS+LNMLTP+L  GV E+ +S
Sbjct:  171 RPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLS 228
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: F0Y5G6_AURAN (Protein farnesyltransferase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G6_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 2.070e-17
Identity = 37/57 (64.91%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAV 180
            R+ LY F  ++K  SGGFRMHDDGEVDVRGTYTA+A+A+L N+LTPEL +G A +A+
Sbjct:  110 RKGLYAFLLSMKDPSGGFRMHDDGEVDVRGTYTALAVAALFNVLTPELAEGAAAYAL 166
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A2R5G6E4_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6E4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.510e-17
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEF 174
            R A+YRFF +LKH SGGFR+  DGE+D RG YT +A+AS+LN+LTPELT+G A+F
Sbjct:  171 RDAIYRFFMSLKHPSGGFRVQPDGEIDTRGLYTVLAVASILNILTPELTEGCAKF 225
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S2KZX0_9DINO (Protein farnesyltransferase subunit beta n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2KZX0_9DINO)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-15
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEF 174
            RR +Y+F   +KH  GGFRMHD+GE D+RGTY AIA+AS+L++LT EL +GV E+
Sbjct:  134 RRTMYQFLMRMKHPEGGFRMHDEGETDMRGTYCAIAVASMLHILTDELAEGVPEY 188
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BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Match: A0A7S3M5V6_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5V6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 9.320e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   10 RRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPELTKGVAEFAV 180
            R A+Y +F +LK  SGGF +H DGEVD RGTYT IA+A +LN+LT ELT+GVA+F V
Sbjct:  123 RPAMYGYFLSLKSPSGGFMIHTDGEVDSRGTYTVIAVARVLNILTKELTEGVADFVV 179
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83856.16557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE5_9PHAE8.360e-2482.14Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI2.280e-2282.14Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
A0A836CMB6_9STRA9.800e-2172.41Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
A0A7S2S187_9STRA8.170e-2077.97Protein farnesyltransferase subunit beta n=1 Tax=R... [more]
A0A7S4ECU6_9STRA6.150e-1970.69Protein farnesyltransferase subunit beta n=1 Tax=P... [more]
W7TZN2_9STRA7.000e-1868.97Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
F0Y5G6_AURAN2.070e-1764.91Protein farnesyltransferase subunit beta n=1 Tax=A... [more]
A0A2R5G6E4_9STRA7.510e-1765.45Protein farnesyltransferase subunit beta n=1 Tax=H... [more]
A0A7S2KZX0_9DINO4.480e-1560.00Protein farnesyltransferase subunit beta n=1 Tax=B... [more]
A0A7S3M5V6_9STRA9.320e-1563.16Protein farnesyltransferase subunit beta n=2 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83856contigS-dermatodea_contig83856:61..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue8.2e-19
Seed eggNOG ortholog2880.D7FXI8
Preferred nameFNTB
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0365@2759
EC2.5.1.58
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.2118642-CDS-S-dermatodea_contig83856:60..2431622925339.2118642-CDS-S-dermatodea_contig83856:60..243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83856 61..243 +
1694079866.1280987-CDS-S-dermatodea_contig83856:60..2431694079866.1280987-CDS-S-dermatodea_contig83856:60..243Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83856 61..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83856.16557.1prot_S-dermatodea_contig83856.16557.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83856 61..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83856.16557.1

>prot_S-dermatodea_contig83856.16557.1 ID=prot_S-dermatodea_contig83856.16557.1|Name=mRNA_S-dermatodea_contig83856.16557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
TAYRRALYRFFATLKHASGGFRMHDDGEVDVRGTYTAIAIASLLNMLTPE
LTKGVAEFAVS
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mRNA from alignment at S-dermatodea_contig83856:61..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83856.16557.1 ID=mRNA_S-dermatodea_contig83856.16557.1|Name=mRNA_S-dermatodea_contig83856.16557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at S-dermatodea_contig83856:61..243+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTGCTTACAGGCGTGCCCTGTATCGATTTTTTGCGACTCTAAAGCACGC
CTCCGGAGGGTTTCGAATGCACGATGACGGGGAGGTGGACGTGAGGGGCA
CCTATACCGCCATCGCGATTGCTTCCCTGCTGAACATGCTCACGCCCGAG
CTGACCAAAGGAGTGGCGGAGTTTGCGGTGAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig83856:61..243+

>mRNA_S-dermatodea_contig83856.16557.1 ID=mRNA_S-dermatodea_contig83856.16557.1|Name=mRNA_S-dermatodea_contig83856.16557.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig83856:61..243+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACTGCTTACAGGCGTGCCCTGTATCGATTTTTTGCGACTCTAAAGCACGC
CTCCGGAGGGTTTCGAATGCACGATGACGGGGAGGTGGACGTGAGGGGCA
CCTATACCGCCATCGCGATTGCTTCCCTGCTGAACATGCTCACGCCCGAG
CTGACCAAAGGAGTGGCGGAGTTTGCGGTGAGCACTGCTTACAGGCGTGC
CCTGTATCGATTTTTTGCGACTCTAAAGCACGCCTCCGGAGGGTTTCGAA
TGCACGATGACGGGGAGGTGGACGTGAGGGGCACCTATACCGCCATCGCG
ATTGCTTCCCTGCTGAACATGCTCACGCCCGAGCTGACCAAAGGAGTGGC
GGAGTTTGCGGTGAGC
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