mRNA_S-dermatodea_contig8385.16556.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8385.16556.1
Unique NamemRNA_S-dermatodea_contig8385.16556.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A6H5JD63_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD63_9PHAE)

HSP 1 Score: 396 bits (1017), Expect = 6.310e-122
Identity = 348/742 (46.90%), Postives = 381/742 (51.35%), Query Frame = 1 
Query:  154 MYPA-----APYPGQQDMFQSQQFAAAAAMSQYTNFGRGL-AEM----DPYRGPH---MPYRPHMEFPRG-YVVPP---GAGAPAYLP-PGSHQLSYYRQYP-GMVHMPGGE--NRGQPIAGAGGAAXXXXXXXXXASPTATA----------------------------------------HPKESILESLLAARSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTPKTAQETAEEGKGAVEAQKIESKPPVAAAGAAAPAGAGGFHMQPPGVYTPR----SVAGGG--------------QAAYVASAAGXXXAAGP--------------------------AVTAMHLTGLRGGFS------------QDMHRMGGMTGIAPPLPMAVLPMAVSPAGG-GAMQYMAAAALPPPSPSPVIASVGP---------------HPA-GFPGDEAYEEHARQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSETNSALLPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATDEVVGKGYIGDASMSELADDTSADQGSSGEDSRSAGTGQTASNADSSSGLGTGCTSIADEASSS--------GVPSLSSLEVKRGGRGAAGGGGTRTSGSAMCSGGRNHA 1953
            M+PA      PYPGQQDM    QFA A+AMSQY  +G  L AE+    DPYR  H   +PY   +E PRG Y+VP    G  A AYL  PG   LSYYRQ+P GMV M  G     G+P AGA  AA      XXX                                                PKESILESLLAARSER                                           + E  E   G     K       AAA A   +G       PP +        +V GGG              Q   V +A G   A                             A  AMHLTGL G FS            Q +  M GM G+ PP  + V     SPAGG  AMQ   A     PSPSP  A   P               H A GF   +A+EEH RQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDIL VIPDPVFAFDTA+GRVWFAS SAS+QFGL V+DLTSACFFDLMTEDCSKRLRVLIDTA+K+VSETNS+LL ERMTVRFKKRK AI LGELSGRLS+  GV TAVCSVRPL+LATD++VGKGYIGDAS+ ELA+DTSADQGSS EDSRSAGTGQT +    SSG                       GVPSLSSLEVKR        GGT TS S    GGR +A
Sbjct:   98 MHPAMYQRPTPYPGQQDMHYQPQFATASAMSQYAAYGGRLPAELHVAADPYRNVHHHHLPYSASVELPRGGYLVPASPHGVPASAYLAAPGPGGLSYYRQFPPGMVQMAAGAIPGDGEPSAGAKLAAAISFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPKESILESLLAARSERLSAG---------------------------------------SMEAEELSSGEAAGAKSNCGATAAAAAADRESGCSPSSPLPPNLQQDTGAHAAVTGGGKVGIEAGDKSLAEEQRQAVEAAHGAVTAXXXXXXXXXXXXXXXXXXXXPLAAAANVSAAVAMHLTGLSGSFSGVGGMHHGIGTMQGVGGMAGMRGMPPPTAVTV-----SPAGGPAAMQPYMAPVGGLPSPSPTGAPHQPQQQXXXXXXXXXXXQHSATGFASHDAFEEHIRQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILEVIPDPVFAFDTANGRVWFASTSASAQFGLSVEDLTSACFFDLMTEDCSKRLRVLIDTAAKEVSETNSSLLHERMTVRFKKRKGAILLGELSGRLSQLNGVTTAVCSVRPLSLATDDIVGKGYIGDASVGELAEDTSADQGSSSEDSRSAGTGQTTTG---SSGXXXXXXXXXXXXXXXXXXXXXXXGVPSLSSLEVKRRD------GGTATSSSGDGGGGRGNA 786
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: D8LMM3_ECTSI (PAS domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM3_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 2.180e-121
Identity = 344/650 (52.92%), Postives = 383/650 (58.92%), Query Frame = 1 
Query:  208 FAAAAAMSQYTNFGRGL-AEM----DPYRGPH---MPYRPHMEFPRG-YVVPP---GAGAPAYLP-PGSHQLSYYRQYP-GMVHMPGGE--NRGQPIAGA--------GGAAXXXXXXXXXASPTATA--------------------------------HPKESILESLLAARSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKT------------PKTAQETAEE------GK-GAVEAQKIESKPPVAAAGAAAPAGAGGFHMQPPGVYTPRSVAGGGQAAYVASAAGXXXAAGPAVTAMHLTGLRGGFS------------QDMHRMGGMTGIAPPLPMAVLPMAVSPAGGGA-MQ-YMAAAALPPPSPSPVIASVGPHPAGFPGDEAYEEHARQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSETNSALLPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATDEVVGKGYIGDASMSELADDTSADQGSSGEDSRSAGTGQTASNAD---SSSGLGTGCTSIADEASSSG--VPSLSSLEVKR 1875
            FA A+AMSQY  +G GL AE+    DPYR  H   +PYR  +E PRG Y+VP    G  A AYL  PG   LSYYRQ+P GMV M  G     G+P AGA        GGA XXXXXXXXX                                        PKESILESLLAARSER                      XXXXXXXXXXXXXXXX              P   Q+T         GK GA E   +E+     A     P G              R+VA     A VA+ +        A  AMHLTGL GGFS            Q +  M GM G+ PP  +AV     SPAGG A MQ YMA        P     S     AGF   +A+EEH RQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDIL VIPDPVFAFDTA+GRVWFAS SAS+QFGL V+DLTSACFFDLMTEDCSKRLRVLIDTA+KDVSETNS+LL ERMTVRFKKRK AI LGELSGRLS+  GV TAVCSVRPL+LATDE+VGKGYIGDAS+ +LA  T+A QG+S ++SRS GTGQ  + +    +SSGLGTG   IA++  S+G  V  LSSLE KR
Sbjct:    7 FATASAMSQYAAYGGGLPAELHVAADPYRNAHHHHLPYRASVELPRGGYLVPASPHGVPASAYLAAPGPGGLSYYRQFPPGMVQMAAGAIPGDGEPSAGAKLAAAISFGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPKESILESLLAARSERLSAGSMEAEELSSGEVAGAKSNXXXXXXXXXXXXXXXXADRESGCSPSSPLPPNLQQDTGAHAAVPGGGKSGAGEGSGVEAGDKSLAEEQRMPDGG-------------RTVAAAAPLAAVANVS--------AAVAMHLTGLPGGFSGVGGMHHGIGTMQGVGGMAGMRGMPPPTAVAV-----SPAGGPATMQPYMA--------PGQQQHSA----AGFASHDAFEEHIRQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILEVIPDPVFAFDTANGRVWFASTSASAQFGLSVEDLTSACFFDLMTEDCSKRLRVLIDTAAKDVSETNSSLLHERMTVRFKKRKGAILLGELSGRLSQLNGVTTAVCSVRPLSLATDEIVGKGYIGDASVRQLAKKTNAHQGNSHQESRSGGTGQNKNGSSGEWTSSGLGTGFPFIAEKGPSNGGGVAHLSSLEGKR 618
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A835ZC41_9STRA (E1-E2 ATPase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC41_9STRA)

HSP 1 Score: 174 bits (442), Expect = 8.950e-42
Identity = 99/163 (60.74%), Postives = 123/163 (75.46%), Query Frame = 1 
Query: 1177 EKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSETNSALLPERMTVRFKK----RKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATDE 1653
            E+KLQKRAANR+SAQLSR+RKKA I++LR +N+ L+R E+IL V+PDPVFAF+  DG VWFAS SA++QFGL V DL  A FFDL+T DCS RL  LI  A +D ++  S LL ERMTVRF+K       A+ LGELSGRL+RQ G ++ VCSVR L+L  D+
Sbjct:  341 ERKLQKRAANRRSAQLSRQRKKAFIDDLRSQNEALRRQEEILDVVPDPVFAFNVHDGLVWFASKSAAAQFGLRVDDLLDANFFDLVTLDCSNRLHALISRALEDDADGASVLLRERMTVRFRKGGASSNVAMLLGELSGRLNRQDGEVSCVCSVRLLSLMFDD 503
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A835YR21_9STRA (PAS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR21_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.120e-41
Identity = 108/212 (50.94%), Postives = 137/212 (64.62%), Query Frame = 1 
Query: 1177 EKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSETNSALLPERMTVRFKK----RKTAIHLGELSGRLSRQ-GGVMTAVCSVRPLALATDE--------------VVGKGYIGDASMSELADDTSADQGSSGEDSRSAG 1755
            +++ QKRAANRKSAQLSR+RKKA I ELR E+++L+R E+IL+V+PDPVFAFD   GR+ FAS SA++QFGL V+ L +A  FDL+T DCS RLR LI  A  D   + + LL ERMTVRF+K       A+ LGELSGRL+RQ GG +  VCSVR L+L  D+                   Y GD S S++ D       SSGE++ S G
Sbjct:    3 DRQQQKRAANRKSAQLSRQRKKAHINELRQEHEELKRQEEILAVVPDPVFAFDALTGRISFASRSAAAQFGLRVEHLLAANLFDLVTADCSNRLRALIARALADHPGSQTLLLGERMTVRFRKGGAASNVAMALGELSGRLNRQDGGQVACVCSVRVLSLMFDDHGDAQRAAAAFXXXXXATDYNGDQSTSDM-DQDGGSAASSGEETTSTG 213
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A6V1RHF1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RHF1_HETAK)

HSP 1 Score: 109 bits (272), Expect = 2.830e-21
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 1 
Query: 1177 EKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSETNSAL-LPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATDEVVGKGY 1671
            ++K+QKRAANRKSAQLSRKRKKA ++EL+ EN  L+R++DIL  IPD VFAFD   G++ FASNS      +P   L     F+L+TE   K+L+ L+D            L LP R+ + F  +      GEL G +     ++  VCS RP A   ++V+  GY
Sbjct:  123 DRKIQKRAANRKSAQLSRKRKKAFVDELKAENATLKRNKDILDCIPDLVFAFDALSGKIVFASNSVYQCLQVPTARLLDLSIFNLVTESSGKKLKELLDKVVNTRPAQEQRLDLPGRIELCFLTKYMTRVWGELDGVVQFNEDLIECVCSFRPSA--RNQVLMAGY 286
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BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A7S2UWG9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWG9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.090e-20
Identity = 81/205 (39.51%), Postives = 106/205 (51.71%), Query Frame = 1 
Query: 1150 AYEEHARQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLR-VLIDTASKDVSETNSALLPERMTVRFKKRKTAIHLGELSGRLS-RQGGVMTAVCSVRPLA----LATDEVVGKG-----YIGDASMSELADDTSADQGSS 1731
            + EEH  Q +KK+ KRAANRKSAQLSRKRKKA I+ELR ENQ L+R++ IL  IPD VF+FD   G   F S S S+   +PV  L     + L+T    K L+ +L  T      E     LP+R+ + F+ +      GE+ G +       +  VC+ RP      L TD   G+         D   S  +DD  AD GSS
Sbjct:  113 SLEEHVEQYKKKMVKRAANRKSAQLSRKRKKAFIDELRSENQVLRRYQHILESIPDLVFSFDAKSGCFCFVSKSVSNYLQIPVSRLLETSVYQLVTGGSGKNLKKILQKTLEGKSDEEERCDLPKRLELCFQTKYMTKIWGEVDGVIHFGSKDKVECVCTFRPSIRKSKLGTDVTAGESSGQSXXQTDPDNSAGSDDADADSGSS 317
[Close]
BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A7S2UY90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY90_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.860e-15
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1 
Query: 1144 DEAYEEHARQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLR 1461
            D   +EH R    K+QKRAANRKSAQLSRKRKKA  +EL+ EN+ L+ H++ILS I D +FAFDT  G++ +AS S      +PV  L  +  + LM E  +  LR
Sbjct:   22 DPLADEHNR----KMQKRAANRKSAQLSRKRKKAYEDELKAENEALRHHKEILSHIRDLIFAFDTTSGKISYASPSMRRCLQIPVHRLLESSIYSLMRESSALLLR 123
[Close]
BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A1Z5JY34_FISSO (PAS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JY34_FISSO)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-14
Identity = 71/192 (36.98%), Postives = 101/192 (52.60%), Query Frame = 1 
Query: 1078 LPPPSPSPVIASVGPHPAGFPGDEAYEEHARQQEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRV-LIDT--ASKDVSET---NSALLPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPL 1635
            +PPP P+ + ASV   P     D + +E    + KK  KRAANRKSAQLSRKRKK  IEEL+ EN  L+R E IL  IPD V  FD++ G++WF S S          +L    F+D ++ +  + L+   +D+  A +DVS+T    + +    +  +    K       L+G +   G     VCS+RPL
Sbjct:    1 MPPPLPNNLQASVNSLPTTNDPDASDDEP---EGKKQMKRAANRKSAQLSRKRKKQFIEELKEENDGLRRKEQILRSIPDLVVVFDSS-GKLWFVSESVERFLSFTASELEGTSFWDRLSPESVRILKAAFMDSLAAREDVSDTVQLGTGVWELELVDKSNTNKRV----SLNGVVHFAGERPECVCSIRPL 184
[Close]
BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A7S2A0J8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A0J8_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.410e-13
Identity = 61/167 (36.53%), Postives = 91/167 (54.49%), Query Frame = 1 
Query: 1177 EKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRV-LIDTASKDVSETNSALLPERM-TVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATDEVVGKGY 1671
            +KK  KRAANR+SAQLSRKRKK  IEEL+ EN +L+R E IL  IPD +  FD+A GR+WF S+S S        +L +  F+D + ++  + L+   +D  +      ++A L   +  +R   R  +  L  L+G +   G     VCS+RP    T   + + +
Sbjct:  448 DKKQLKRAANRRSAQLSRKRKKQFIEELKEENDELRRKEQILRSIPDLIVVFDSA-GRLWFVSHSVSRLLDYTPHELEAESFWDRLCDESVRLLKAAFMDALAAKSQGCDTAPLGNGVWELRLVDRDGSHKLVTLNGVVHFSGDSPECVCSIRPRDYTTSPTIHQNH 613
[Close]
BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Match: A0A7S0CI60_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CI60_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.360e-13
Identity = 57/165 (34.55%), Postives = 89/165 (53.94%), Query Frame = 1 
Query: 1174 QEKKLQKRAANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGRVWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRV-LIDTASKDVSETNSA----------LLPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPL 1635
            ++KK  KRAANR+SAQLSRKRKK  IEEL+ EN DL+R E IL  IPD +  FD++ G++ F S+S ++       +L +  F+D + ++  + L+   +D  +  V   ++A          L+ + MT +       +H G+      +       VCS+RPL
Sbjct:   81 EDKKQLKRAANRRSAQLSRKRKKQFIEELKDENDDLRRKEQILRSIPDLIVVFDSS-GKLSFVSHSVTNSLNFTPSELENTSFWDRLCDESVRLLKAAFMDALAARVKGMHTAPLGTSLWELRLVDKDMTFKLVTLNGVVHFGD-----EKSNSTSECVCSIRPL 239
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8385.16556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5JD63_9PHAE6.310e-12246.90PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMM3_ECTSI2.180e-12152.92PAS domain-containing protein (Fragment) n=1 Tax=E... [more]
A0A835ZC41_9STRA8.950e-4260.74E1-E2 ATPase-domain-containing protein n=1 Tax=Tri... [more]
A0A835YR21_9STRA1.120e-4150.94PAS domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A6V1RHF1_HETAK2.830e-2142.77Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UWG9_9STRA3.090e-2039.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2UY90_9STRA2.860e-1549.06Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Z5JY34_FISSO5.070e-1436.98PAS domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S2A0J8_9STRA2.410e-1336.53Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S0CI60_9STRA5.360e-1334.55Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8385contigS-dermatodea_contig8385:3859..7832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.7
Seed ortholog evalue5.5e-108
Seed eggNOG ortholog2880.D8LMM3
EggNOG free text desc.PAS domain
EggNOG OGs2E1ZA@1,2S98K@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPAS domain
Ec32 orthologEc-06_004000.1
Exons4
Model size2025
Cds size2025
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8385.16556.1prot_S-dermatodea_contig8385.16556.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8385 3859..7832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.13446-CDS-S-dermatodea_contig8385:3858..42181622925339.13446-CDS-S-dermatodea_contig8385:3858..4218Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 3859..4218 -
1694079866.0758286-CDS-S-dermatodea_contig8385:3858..42181694079866.0758286-CDS-S-dermatodea_contig8385:3858..4218Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 3859..4218 -
1622925339.1479673-CDS-S-dermatodea_contig8385:4766..49101622925339.1479673-CDS-S-dermatodea_contig8385:4766..4910Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 4767..4910 -
1694079866.0894418-CDS-S-dermatodea_contig8385:4766..49101694079866.0894418-CDS-S-dermatodea_contig8385:4766..4910Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 4767..4910 -
1622925339.1583946-CDS-S-dermatodea_contig8385:5289..66181622925339.1583946-CDS-S-dermatodea_contig8385:5289..6618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 5290..6618 -
1694079866.100829-CDS-S-dermatodea_contig8385:5289..66181694079866.100829-CDS-S-dermatodea_contig8385:5289..6618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 5290..6618 -
1622925339.1718695-CDS-S-dermatodea_contig8385:7640..78321622925339.1718695-CDS-S-dermatodea_contig8385:7640..7832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 7641..7832 -
1694079866.1116004-CDS-S-dermatodea_contig8385:7640..78321694079866.1116004-CDS-S-dermatodea_contig8385:7640..7832Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8385 7641..7832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8385.16556.1

>prot_S-dermatodea_contig8385.16556.1 ID=prot_S-dermatodea_contig8385.16556.1|Name=mRNA_S-dermatodea_contig8385.16556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=675bp
LYCQCGCGAPVDAAGMHGAAAQHQPPQQAPGAHPHAAQFRGAQGMMHPHP
HMYPAAPYPGQQDMFQSQQFAAAAAMSQYTNFGRGLAEMDPYRGPHMPYR
PHMEFPRGYVVPPGAGAPAYLPPGSHQLSYYRQYPGMVHMPGGENRGQPI
AGAGGAAPEAAPPPPHASPTATAHPKESILESLLAARSERLSAASAEAEE
TSAAAASAAAQHGASGGNSSSPAAGAAAKTPKTAQETAEEGKGAVEAQKI
ESKPPVAAAGAAAPAGAGGFHMQPPGVYTPRSVAGGGQAAYVASAAGGAG
AAGPAVTAMHLTGLRGGFSQDMHRMGGMTGIAPPLPMAVLPMAVSPAGGG
AMQYMAAAALPPPSPSPVIASVGPHPAGFPGDEAYEEHARQQEKKLQKRA
ANRKSAQLSRKRKKALIEELRYENQDLQRHEDILSVIPDPVFAFDTADGR
VWFASNSASSQFGLPVKDLTSACFFDLMTEDCSKRLRVLIDTASKDVSET
NSALLPERMTVRFKKRKTAIHLGELSGRLSRQGGVMTAVCSVRPLALATD
EVVGKGYIGDASMSELADDTSADQGSSGEDSRSAGTGQTASNADSSSGLG
TGCTSIADEASSSGVPSLSSLEVKRGGRGAAGGGGTRTSGSAMCSGGRNH
AVGSGSTGSGATGEGSTGSGGSEEG
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mRNA from alignment at S-dermatodea_contig8385:3859..7832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8385.16556.1 ID=mRNA_S-dermatodea_contig8385.16556.1|Name=mRNA_S-dermatodea_contig8385.16556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3974bp|location=Sequence derived from alignment at S-dermatodea_contig8385:3859..7832- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTATTGCCAGTGCGGCTGCGGAGCCCCCGTGGACGCAGCAGGTATGCA
TGGGGCCGCCGCACAACACCAACCGCCCCAACAGGCGCCGGGGGCACATC
CACACGCGGCCCAGTTCAGGGGGGCCCAGGGGATGATGCACCCGCACCCC
CACATGTATCCAGCGGCGCCGTACCCTGGTCAGCAAGATATGGTGAGGGG
GGCGTATAATATGAGGACGTAGGGCACGTGTTCTGTTGGCGTAGCGCAGG
CTACGTGCCGTTTTCGTGTACAAGATCTTGATGCCCTGTGCATTTTGTTT
TGCACCAGCCGTACGTTCCTCATTTGTATCTGATCGCATGTGTTAATATA
ATAGTATCCATTTGTATTAATTGATGAAAAGAAGATTATTCGAACGGGCA
CGTGACGGCTGTTTGCTGGTTTTCTGTTTTGGCAGCTGTTGCGGTGGTCG
TTCTGGCGCGCCTCGAACGCCCCAGATTTTCTATTTTCGTTTCGAGTTAT
GTAGGGTGGGGCGGCGCGATGCGCGGAAAGAGCCGCGGGAGTGCCGATAT
TGCTGCACCGGTGACTGCAACACAAAGACACGAGAATGCTCTTCTCTCTC
TCTCTCTCGGGTCTGTCCCTGCTTTTCGCGACATTTTTGTACAGAGTCAG
TACTTGACATGTTTTTTTTTTTTTCTGATTCGCAAGCTTGCGGGCCCTTC
ATGTTATAAGTTATAAAAGTTACATCTGGTCGTACACCATTTCTTTTTGA
AAGTACAACGCTTGTGTTCGTCGAATCAAGTTTGAGTAGTTGTGTCACAC
CCTACAGTTTAGCCTGACGGGGTGTCTCCCTCCCCCCCCCCTAGGCGATC
AATGCAAGGAAATATGTACACGAGTATGAAGCGTCGATGACACAATACAC
AGTATCTACAAGCAGTATCTCGCGGTGGCAGGCTATTAAATGCCTAATGA
CGTACTGTATGATTAACATCGTCGTCGCTCTTGAAAAGTCGCGCGTCTGA
CGGCAACACCCGCATAGAGTTACCGATCAATGCGTGTACATTAATGCGCA
ATAATGCTTACCTGTAAGTTTCCGACGGTCTGACACAATCCAACCTAGAT
ATCTGCGTTGGTTTATGTGCCAGCAAACACTAATTTTAAAATTAAAATAG
TATCATTAACATCCCCTCTCTCTCGACCCACCCACCATCCACCTCTCCGC
GAACTCAGCAACAGTTCCAGTCCCAGCAATTCGCGGCGGCCGCAGCGATG
TCACAGTACACCAACTTCGGGCGGGGTTTGGCAGAAATGGATCCCTATCG
GGGCCCGCACATGCCGTACCGCCCTCACATGGAATTCCCGCGGGGCTACG
TGGTACCTCCGGGCGCGGGCGCGCCTGCATACCTCCCCCCCGGCTCCCAC
CAGCTCAGCTACTACCGCCAGTACCCGGGAATGGTTCACATGCCGGGTGG
CGAAAACAGGGGCCAGCCAATCGCCGGCGCCGGAGGGGCTGCACCGGAGG
CAGCCCCGCCTCCTCCCCACGCGAGCCCGACCGCCACGGCGCACCCGAAG
GAGTCCATCCTCGAGTCGCTTCTGGCCGCGCGCTCGGAGAGGCTGTCGGC
GGCGTCAGCCGAAGCCGAGGAGACTTCCGCCGCCGCCGCCTCCGCCGCAG
CACAACATGGCGCGAGTGGCGGAAACTCTTCGTCCCCAGCCGCAGGCGCG
GCGGCGAAGACGCCAAAGACCGCGCAGGAAACGGCGGAGGAAGGCAAGGG
CGCGGTCGAGGCGCAAAAAATTGAATCGAAGCCACCCGTTGCCGCGGCGG
GGGCAGCGGCACCGGCGGGGGCTGGGGGTTTCCACATGCAACCCCCCGGG
GTTTACACGCCACGGTCCGTCGCAGGAGGGGGGCAAGCGGCATATGTTGC
ATCTGCGGCTGGCGGCGCGGGGGCTGCAGGGCCGGCGGTAACGGCGATGC
ATCTCACGGGGTTGCGTGGAGGGTTTTCTCAAGATATGCACAGGATGGGA
GGAATGACGGGGATAGCTCCACCGCTTCCAATGGCGGTGCTTCCAATGGC
GGTGTCCCCCGCAGGGGGGGGTGCGATGCAGTACATGGCCGCGGCGGCCT
TGCCGCCACCGTCGCCGTCGCCGGTGATTGCGTCCGTGGGGCCCCATCCG
GCAGGGTTTCCGGGCGATGAGGCGTACGAAGAGCACGCGCGGCAGCAGGA
GAAGAAGCTCCAGAAGCGCGCGGCGAACCGCAAGTCAGCGCAGCTGAGCC
GCAAGCGCAAGAAGGCGTTGATCGAAGAGCTCAGGTACGAGAACCAAGAC
TTGCAGCGGCACGAGGACATCCTGTCGGTCATCCCCGATCCCGTGTTCGC
GTTCGACACCGCGGACGGCAGGGTGTGGTTCGCGAGCAATTCGGCCTCGT
CGCAGTTCGGGCTACCGGTAAAGGACCTGACGTCGGCATGTTTCTTCGAC
CTCATGACCGAAGACTGTTCGAAGCGCTTGCGGGTGCTCATCGACACTGC
CTCGAAGGACGTATCGGAGACGAACAGCGCGCTCCTCCCCGAGGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGCAAGGCGGGAGTTCCT
TATTTTTGTGCCCTTTTTTTTCGTACCTGCCACGCGTAGTTGCGTACTGG
CCAACTCTGTCAGGGTGCCGCCAGCCCTGCCGTAGGATATAGTGGTATAC
AGTAGTAGTTGTTGTACATAAAAACGTTGTATAAATACTGCTTTTTTGTT
GTTGTTTTATTGTATCATCGTATCCACCGTCTGTCGAAGAAAAAAATGGA
AACCTGACGGCGCTCTGGTACGTGTACAAAGCGATTTTCCCTTAATTCCA
TATATATGAGCTTATTTCTCTCTCTCTCGATCCGTCTTTCTCCTCGCCGC
TGTTCCGCGCCTTTTTATATAGCGCATGACGGTACGCTTCAAAAAGAGGA
AGACCGCCATTCACCTTGGCGAGCTGAGCGGGCGTTTGTCGAGACAGGGG
GGCGTGATGACGGCCGTGTGCAGCGTGCGACCGCTCGCCTTGGCGACGGA
CGAAGTCGTGGGCAAGGTACGCAGCGATTTTTTCTTCTTTCTTTCTTGTT
GTTCTGTTTTTTCTTGGCCTTCGCCCACCCTTTGCCTTTGTTTTGGCGCT
TTCATTCGTGTTTTGTGCGTTCTCCCAGGGTGATGGGAGGCGTTTAGCTC
CCTGCGGTGTCTCGTATGAGTCGTCTCGGCATGCAATTTTTTTGCATCCC
TCAAGCATGGTTTTTACGTTTATTTGCATCCCTCAAGCCAAAGGCAGAGG
AGAAAATACTGCCAACGCTGGCGCTACCAGTGCTCCAACAGACGAAAGAC
TCGGTAGCGTTTGCCTACTCCGTTTCACCCATTAATACCAGTACTACACC
TAACTATTAATACCCCGCCACCTCGTGGGAGTAGTCCGGTTTTCGAGGGA
CCAAAAGACCGCGCAGGCTGCCGCACCCCACCCCAACCCAACCCAAACGT
AAGAGTAAGAGTAATTTAAAAGATGGAACCCGCCTCCCCAGATTACCGAC
AGCTCCCAACACCCCCTCCTTTGCCACATCTCCCCCGCGATCTCGGTGTG
CTTCTTCACTGCAGGGCTACATTGGGGACGCGAGCATGAGCGAGCTGGCG
GACGATACGAGCGCCGACCAGGGCAGCAGCGGCGAGGACTCCCGCAGCGC
TGGCACGGGGCAGACCGCTAGCAACGCGGACTCATCCTCCGGCCTTGGCA
CCGGCTGCACCTCCATCGCGGACGAAGCCTCCTCCAGCGGCGTCCCGAGC
CTATCGTCTCTCGAAGTCAAGCGCGGGGGAAGGGGAGCCGCGGGCGGCGG
TGGCACCAGGACCAGCGGCAGCGCGATGTGCAGCGGCGGCAGAAACCATG
CCGTCGGGAGCGGCAGCACAGGCAGCGGTGCCACCGGGGAGGGCAGCACC
GGCAGCGGGGGCTCCGAGGAGGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8385:3859..7832-

>mRNA_S-dermatodea_contig8385.16556.1 ID=mRNA_S-dermatodea_contig8385.16556.1|Name=mRNA_S-dermatodea_contig8385.16556.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4050bp|location=Sequence derived from alignment at S-dermatodea_contig8385:3859..7832- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTATTGCCAGTGCGGCTGCGGAGCCCCCGTGGACGCAGCAGGTATGCA
TGGGGCCGCCGCACAACACCAACCGCCCCAACAGGCGCCGGGGGCACATC
CACACGCGGCCCAGTTCAGGGGGGCCCAGGGGATGATGCACCCGCACCCC
CACATGTATCCAGCGGCGCCGTACCCTGGTCAGCAAGATATGCTCTATTG
CCAGTGCGGCTGCGGAGCCCCCGTGGACGCAGCAGGTATGCATGGGGCCG
CCGCACAACACCAACCGCCCCAACAGGCGCCGGGGGCACATCCACACGCG
GCCCAGTTCAGGGGGGCCCAGGGGATGATGCACCCGCACCCCCACATGTA
TCCAGCGGCGCCGTACCCTGGTCAGCAAGATATGTTCCAGTCCCAGCAAT
TCGCGGCGGCCGCAGCGATGTCACAGTACACCAACTTCGGGCGGGGTTTG
GCAGAAATGGATCCCTATCGGGGCCCGCACATGCCGTACCGCCCTCACAT
GGAATTCCCGCGGGGCTACGTGGTACCTCCGGGCGCGGGCGCGCCTGCAT
ACCTCCCCCCCGGCTCCCACCAGCTCAGCTACTACCGCCAGTACCCGGGA
ATGGTTCACATGCCGGGTGGCGAAAACAGGGGCCAGCCAATCGCCGGCGC
CGGAGGGGCTGCACCGGAGGCAGCCCCGCCTCCTCCCCACGCGAGCCCGA
CCGCCACGGCGCACCCGAAGGAGTCCATCCTCGAGTCGCTTCTGGCCGCG
CGCTCGGAGAGGCTGTCGGCGGCGTCAGCCGAAGCCGAGGAGACTTCCGC
CGCCGCCGCCTCCGCCGCAGCACAACATGGCGCGAGTGGCGGAAACTCTT
CGTCCCCAGCCGCAGGCGCGGCGGCGAAGACGCCAAAGACCGCGCAGGAA
ACGGCGGAGGAAGGCAAGGGCGCGGTCGAGGCGCAAAAAATTGAATCGAA
GCCACCCGTTGCCGCGGCGGGGGCAGCGGCACCGGCGGGGGCTGGGGGTT
TCCACATGCAACCCCCCGGGGTTTACACGCCACGGTCCGTCGCAGGAGGG
GGGCAAGCGGCATATGTTGCATCTGCGGCTGGCGGCGCGGGGGCTGCAGG
GCCGGCGGTAACGGCGATGCATCTCACGGGGTTGCGTGGAGGGTTTTCTC
AAGATATGCACAGGATGGGAGGAATGACGGGGATAGCTCCACCGCTTCCA
ATGGCGGTGCTTCCAATGGCGGTGTCCCCCGCAGGGGGGGGTGCGATGCA
GTACATGGCCGCGGCGGCCTTGCCGCCACCGTCGCCGTCGCCGGTGATTG
CGTCCGTGGGGCCCCATCCGGCAGGGTTTCCGGGCGATGAGGCGTACGAA
GAGCACGCGCGGCAGCAGGAGAAGAAGCTCCAGAAGCGCGCGGCGAACCG
CAAGTCAGCGCAGCTGAGCCGCAAGCGCAAGAAGGCGTTGATCGAAGAGC
TCAGGTACGAGAACCAAGACTTGCAGCGGCACGAGGACATCCTGTCGGTC
ATCCCCGATCCCGTGTTCGCGTTCGACACCGCGGACGGCAGGGTGTGGTT
CGCGAGCAATTCGGCCTCGTCGCAGTTCGGGCTACCGGTAAAGGACCTGA
CGTCGGCATGTTTCTTCGACCTCATGACCGAAGACTGTTCGAAGCGCTTG
CGGGTGCTCATCGACACTGCCTCGAAGGACGTATCGGAGACGAACAGCGC
GCTCCTCCCCGAGTTCCAGTCCCAGCAATTCGCGGCGGCCGCAGCGATGT
CACAGTACACCAACTTCGGGCGGGGTTTGGCAGAAATGGATCCCTATCGG
GGCCCGCACATGCCGTACCGCCCTCACATGGAATTCCCGCGGGGCTACGT
GGTACCTCCGGGCGCGGGCGCGCCTGCATACCTCCCCCCCGGCTCCCACC
AGCTCAGCTACTACCGCCAGTACCCGGGAATGGTTCACATGCCGGGTGGC
GAAAACAGGGGCCAGCCAATCGCCGGCGCCGGAGGGGCTGCACCGGAGGC
AGCCCCGCCTCCTCCCCACGCGAGCCCGACCGCCACGGCGCACCCGAAGG
AGTCCATCCTCGAGTCGCTTCTGGCCGCGCGCTCGGAGAGGCTGTCGGCG
GCGTCAGCCGAAGCCGAGGAGACTTCCGCCGCCGCCGCCTCCGCCGCAGC
ACAACATGGCGCGAGTGGCGGAAACTCTTCGTCCCCAGCCGCAGGCGCGG
CGGCGAAGACGCCAAAGACCGCGCAGGAAACGGCGGAGGAAGGCAAGGGC
GCGGTCGAGGCGCAAAAAATTGAATCGAAGCCACCCGTTGCCGCGGCGGG
GGCAGCGGCACCGGCGGGGGCTGGGGGTTTCCACATGCAACCCCCCGGGG
TTTACACGCCACGGTCCGTCGCAGGAGGGGGGCAAGCGGCATATGTTGCA
TCTGCGGCTGGCGGCGCGGGGGCTGCAGGGCCGGCGGTAACGGCGATGCA
TCTCACGGGGTTGCGTGGAGGGTTTTCTCAAGATATGCACAGGATGGGAG
GAATGACGGGGATAGCTCCACCGCTTCCAATGGCGGTGCTTCCAATGGCG
GTGTCCCCCGCAGGGGGGGGTGCGATGCAGTACATGGCCGCGGCGGCCTT
GCCGCCACCGTCGCCGTCGCCGGTGATTGCGTCCGTGGGGCCCCATCCGG
CAGGGTTTCCGGGCGATGAGGCGTACGAAGAGCACGCGCGGCAGCAGGAG
AAGAAGCTCCAGAAGCGCGCGGCGAACCGCAAGTCAGCGCAGCTGAGCCG
CAAGCGCAAGAAGGCGTTGATCGAAGAGCTCAGGTACGAGAACCAAGACT
TGCAGCGGCACGAGGACATCCTGTCGGTCATCCCCGATCCCGTGTTCGCG
TTCGACACCGCGGACGGCAGGGTGTGGTTCGCGAGCAATTCGGCCTCGTC
GCAGTTCGGGCTACCGGTAAAGGACCTGACGTCGGCATGTTTCTTCGACC
TCATGACCGAAGACTGTTCGAAGCGCTTGCGGGTGCTCATCGACACTGCC
TCGAAGGACGTATCGGAGACGAACAGCGCGCTCCTCCCCGAGCGCATGAC
GGTACGCTTCAAAAAGAGGAAGACCGCCATTCACCTTGGCGAGCTGAGCG
GGCGTTTGTCGAGACAGGGGGGCGTGATGACGGCCGTGTGCAGCGTGCGA
CCGCTCGCCTTGGCGACGGACGAAGTCGTGGGCAAGCGCATGACGGTACG
CTTCAAAAAGAGGAAGACCGCCATTCACCTTGGCGAGCTGAGCGGGCGTT
TGTCGAGACAGGGGGGCGTGATGACGGCCGTGTGCAGCGTGCGACCGCTC
GCCTTGGCGACGGACGAAGTCGTGGGCAAGGGCTACATTGGGGACGCGAG
CATGAGCGAGCTGGCGGACGATACGAGCGCCGACCAGGGCAGCAGCGGCG
AGGACTCCCGCAGCGCTGGCACGGGGCAGACCGCTAGCAACGCGGACTCA
TCCTCCGGCCTTGGCACCGGCTGCACCTCCATCGCGGACGAAGCCTCCTC
CAGCGGCGTCCCGAGCCTATCGTCTCTCGAAGTCAAGCGCGGGGGAAGGG
GAGCCGCGGGCGGCGGTGGCACCAGGACCAGCGGCAGCGCGATGTGCAGC
GGCGGCAGAAACCATGCCGTCGGGAGCGGCAGCACAGGCAGCGGTGCCAC
CGGGGAGGGCAGCACCGGCAGCGGGGGCTCCGAGGAGGGCGGCTACATTG
GGGACGCGAGCATGAGCGAGCTGGCGGACGATACGAGCGCCGACCAGGGC
AGCAGCGGCGAGGACTCCCGCAGCGCTGGCACGGGGCAGACCGCTAGCAA
CGCGGACTCATCCTCCGGCCTTGGCACCGGCTGCACCTCCATCGCGGACG
AAGCCTCCTCCAGCGGCGTCCCGAGCCTATCGTCTCTCGAAGTCAAGCGC
GGGGGAAGGGGAGCCGCGGGCGGCGGTGGCACCAGGACCAGCGGCAGCGC
GATGTGCAGCGGCGGCAGAAACCATGCCGTCGGGAGCGGCAGCACAGGCA
GCGGTGCCACCGGGGAGGGCAGCACCGGCAGCGGGGGCTCCGAGGAGGGC
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