mRNA_S-dermatodea_contig83843.16554.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83843.16554.1
Unique NamemRNA_S-dermatodea_contig83843.16554.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83843.16554.1 vs. uniprot
Match: A0A6H5JI82_9PHAE (Protein phosphatase methylesterase-1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI82_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:   28 RFQLKLVYGCGHSVQEDQPNETVTSIMTFAVRRVV 132
            R+QLKLVYG GHS+QEDQP ET  SI+ FA+R  V
Sbjct:  468 RYQLKLVYGSGHSIQEDQPEETAESIINFALRNSV 502
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BLAST of mRNA_S-dermatodea_contig83843.16554.1 vs. uniprot
Match: D7FSV3_ECTSI (Protein phosphatase methylesterase-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.130e-6
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:   28 RFQLKLVYGCGHSVQEDQPNETVTSIMTFAVRRVV 132
            R+QLKLVYG GHS+QEDQP E   SI+ FA+R  V
Sbjct:  305 RYQLKLVYGSGHSIQEDQPEEAAKSIINFALRNSV 339
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83843.16554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JI82_9PHAE2.380e-768.57Protein phosphatase methylesterase-1 n=1 Tax=Ectoc... [more]
D7FSV3_ECTSI1.130e-665.71Protein phosphatase methylesterase-1 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83843contigS-dermatodea_contig83843:281..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.0529969-CDS-S-dermatodea_contig83843:280..4301622925339.0529969-CDS-S-dermatodea_contig83843:280..430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83843 281..430 -
1694079866.0228696-CDS-S-dermatodea_contig83843:280..4301694079866.0228696-CDS-S-dermatodea_contig83843:280..430Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83843 281..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83843.16554.1prot_S-dermatodea_contig83843.16554.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83843 281..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83843.16554.1

>prot_S-dermatodea_contig83843.16554.1 ID=prot_S-dermatodea_contig83843.16554.1|Name=mRNA_S-dermatodea_contig83843.16554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
FSHPVSGARRFQLKLVYGCGHSVQEDQPNETVTSIMTFAVRRVVCGARR*
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mRNA from alignment at S-dermatodea_contig83843:281..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83843.16554.1 ID=mRNA_S-dermatodea_contig83843.16554.1|Name=mRNA_S-dermatodea_contig83843.16554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig83843:281..430- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCGCACCCGGTCTCCGGCGCTCGCAGGTTTCAGCTAAAGCTGGTGTA
CGGCTGTGGTCACAGCGTCCAGGAGGACCAGCCAAACGAAACGGTGACTT
CGATCATGACCTTTGCCGTCAGGCGCGTGGTTTGTGGTGCACGGCGATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83843:281..430-

>mRNA_S-dermatodea_contig83843.16554.1 ID=mRNA_S-dermatodea_contig83843.16554.1|Name=mRNA_S-dermatodea_contig83843.16554.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig83843:281..430- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCGCACCCGGTCTCCGGCGCTCGCAGGTTTCAGCTAAAGCTGGTGTA
CGGCTGTGGTCACAGCGTCCAGGAGGACCAGCCAAACGAAACGGTGACTT
CGATCATGACCTTTGCCGTCAGGCGCGTGGTTTGTGGTGCACGGCGATAA
TTTTCGCACCCGGTCTCCGGCGCTCGCAGGTTTCAGCTAAAGCTGGTGTA
CGGCTGTGGTCACAGCGTCCAGGAGGACCAGCCAAACGAAACGGTGACTT
CGATCATGACCTTTGCCGTCAGGCGCGTGGTTTGTGGTGCACGGCGATAA
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