mRNA_S-dermatodea_contig8380.16551.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8380.16551.1
Unique NamemRNA_S-dermatodea_contig8380.16551.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Match: D8LR83_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR83_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.790e-12
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    4 SAVSSSIGLGL-LAGSPGVAGATVNFETDRYGDKELKIATVNKLRQQIRN 150
            S+V++S GLGL LA SP  A A+VNFET+RYGDKELKIATVNKLRQQIRN
Sbjct:   69 SSVAASFGLGLALAVSPEAAQASVNFETERYGDKELKIATVNKLRQQIRN 118
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BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Match: K8ZA26_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZA26_NANGC)

HSP 1 Score: 49.7 bits (117), Expect = 1.890e-6
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   64 ATVNFETDRYGDKELKIATVNKLRQQIRNMV 156
            A+V F+ DRYGDKELKIATVNKL+Q++RN +
Sbjct:   45 ASVAFDPDRYGDKELKIATVNKLKQKLRNAI 75
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BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Match: A0A7S2QWC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWC3_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.120e-6
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   10 VSSSIGLGLLAGSPGVAGATVNFETDRYGDKELKIATVNKLRQQIRNMV 156
            +SS+IG  +    PG A A+V ++ DRYGDKELKIATVNK+RQ +R+ +
Sbjct:   59 ISSTIGASVFL--PGQATASVFYDPDRYGDKELKIATVNKIRQNVRDAI 105
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BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Match: A0A7S1FWQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWQ2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 8.090e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   49 PGVAGATVNFETDRYGDKELKIATVNKLRQQIRNMV 156
            P  A ATV F+ DRYGDKELKIATVNKLRQ +R+ +
Sbjct:   78 PQEAYATVFFDPDRYGDKELKIATVNKLRQNVRSTI 113
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BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Match: W7U1L4_9STRA (L-ascorbate peroxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L4_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.090e-5
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   64 ATVNFETDRYGDKELKIATVNKLRQQIRNMV 156
            A+V F+ DRYGDKELKIATVNKL+Q++RN +
Sbjct:   90 ASVAFDPDRYGDKELKIATVNKLKQKLRNAI 120
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8380.16551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LR83_ECTSI5.790e-1278.00PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
K8ZA26_NANGC1.890e-670.97Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2QWC3_9STRA3.120e-655.10Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A7S1FWQ2_9STRA8.090e-669.44Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7U1L4_9STRA1.090e-570.97L-ascorbate peroxidase n=1 Tax=Nannochloropsis gad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8380contigS-dermatodea_contig8380:6489..6644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D8LR83
EggNOG free text desc.Peroxidase
EggNOG OGs2DJYV@1,2S61P@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.8316574-CDS-S-dermatodea_contig8380:6488..66441622925338.8316574-CDS-S-dermatodea_contig8380:6488..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8380 6489..6644 +
1694079865.8661962-CDS-S-dermatodea_contig8380:6488..66441694079865.8661962-CDS-S-dermatodea_contig8380:6488..6644Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8380 6489..6644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8380.16551.1prot_S-dermatodea_contig8380.16551.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8380 6489..6644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8380.16551.1

>prot_S-dermatodea_contig8380.16551.1 ID=prot_S-dermatodea_contig8380.16551.1|Name=mRNA_S-dermatodea_contig8380.16551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=52bp
ASAVSSSIGLGLLAGSPGVAGATVNFETDRYGDKELKIATVNKLRQQIRN
MV
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mRNA from alignment at S-dermatodea_contig8380:6489..6644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8380.16551.1 ID=mRNA_S-dermatodea_contig8380.16551.1|Name=mRNA_S-dermatodea_contig8380.16551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at S-dermatodea_contig8380:6489..6644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCCGCCGTGTCTTCTTCGATCGGTCTGGGGCTGTTGGCGGGGTCTCC
GGGGGTCGCGGGGGCTACGGTTAACTTTGAAACGGATCGGTACGGCGACA
AGGAGCTCAAGATCGCCACGGTCAACAAGCTTCGGCAACAGATCCGGAAT
ATGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8380:6489..6644+

>mRNA_S-dermatodea_contig8380.16551.1 ID=mRNA_S-dermatodea_contig8380.16551.1|Name=mRNA_S-dermatodea_contig8380.16551.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig8380:6489..6644+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGTCCGCCGTGTCTTCTTCGATCGGTCTGGGGCTGTTGGCGGGGTCTCC
GGGGGTCGCGGGGGCTACGGTTAACTTTGAAACGGATCGGTACGGCGACA
AGGAGCTCAAGATCGCCACGGTCAACAAGCTTCGGCAACAGATCCGGAAT
ATGGTGGCGTCCGCCGTGTCTTCTTCGATCGGTCTGGGGCTGTTGGCGGG
GTCTCCGGGGGTCGCGGGGGCTACGGTTAACTTTGAAACGGATCGGTACG
GCGACAAGGAGCTCAAGATCGCCACGGTCAACAAGCTTCGGCAACAGATC
CGGAATATGGTG
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