mRNA_S-dermatodea_contig83787.16550.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83787.16550.1
Unique NamemRNA_S-dermatodea_contig83787.16550.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83787.16550.1 vs. uniprot
Match: D8LIQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIQ9_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.920e-25
Identity = 54/73 (73.97%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 KKAREAMKRASGDHLSIKEDEMEMNLKRRKAKEQANLKYDNLVKASIKGTKRENMQSQEMLRAEMQMAYKHGE 219
            KKA EA +RASGD LS++EDEMEMNLK+R+A+E AN K+DNLVKASI G+KRENMQSQ++LRA+MQ AYKHG+
Sbjct:   84 KKASEAKRRASGDALSMREDEMEMNLKKRRAREAANAKFDNLVKASITGSKRENMQSQDLLRAKMQNAYKHGD 156
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83787.16550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIQ9_ECTSI1.920e-2573.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83787contigS-dermatodea_contig83787:466..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D8LIQ9
EggNOG OGs28HHB@1,2QPV8@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001150.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.7834454-CDS-S-dermatodea_contig83787:465..6661622925338.7834454-CDS-S-dermatodea_contig83787:465..666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83787 466..666 -
1694079865.836572-CDS-S-dermatodea_contig83787:465..6661694079865.836572-CDS-S-dermatodea_contig83787:465..666Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83787 466..666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.7995203-UTR-S-dermatodea_contig83787:666..6841622925338.7995203-UTR-S-dermatodea_contig83787:666..684Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83787 667..684 -
1694079865.8542678-UTR-S-dermatodea_contig83787:666..6841694079865.8542678-UTR-S-dermatodea_contig83787:666..684Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83787 667..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83787.16550.1prot_S-dermatodea_contig83787.16550.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83787 466..666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83787.16550.1

>prot_S-dermatodea_contig83787.16550.1 ID=prot_S-dermatodea_contig83787.16550.1|Name=mRNA_S-dermatodea_contig83787.16550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=67bp
MKRASGDHLSIKEDEMEMNLKRRKAKEQANLKYDNLVKASIKGTKRENMQ
SQEMLRAEMQMAYKHGE
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mRNA from alignment at S-dermatodea_contig83787:466..684-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83787.16550.1 ID=mRNA_S-dermatodea_contig83787.16550.1|Name=mRNA_S-dermatodea_contig83787.16550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at S-dermatodea_contig83787:466..684- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAAAGCTCGAGAGGCGATGAAGCGCGCTTCGGGTGATCACCTGTCCAT
AAAGGAGGATGAAATGGAGATGAACCTCAAGCGCCGCAAGGCCAAGGAGC
AGGCCAACCTCAAGTATGACAACCTGGTGAAGGCGTCCATCAAGGGGACC
AAGCGCGAGAATATGCAGAGCCAGGAGATGCTCAGGGCAGAGATGCAGAT
GGCCTATAAGCACGGTGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83787:466..684-

>mRNA_S-dermatodea_contig83787.16550.1 ID=mRNA_S-dermatodea_contig83787.16550.1|Name=mRNA_S-dermatodea_contig83787.16550.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at S-dermatodea_contig83787:466..684- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGCGCGCTTCGGGTGATCACCTGTCCATAAAGGAGGATGAAATGGA
GATGAACCTCAAGCGCCGCAAGGCCAAGGAGCAGGCCAACCTCAAGTATG
ACAACCTGGTGAAGGCGTCCATCAAGGGGACCAAGCGCGAGAATATGCAG
AGCCAGGAGATGCTCAGGGCAGAGATGCAGATGGCCTATAAGCACGGTGA
GATGAAGCGCGCTTCGGGTGATCACCTGTCCATAAAGGAGGATGAAATGG
AGATGAACCTCAAGCGCCGCAAGGCCAAGGAGCAGGCCAACCTCAAGTAT
GACAACCTGGTGAAGGCGTCCATCAAGGGGACCAAGCGCGAGAATATGCA
GAGCCAGGAGATGCTCAGGGCAGAGATGCAGATGGCCTATAAGCACGGTG
AG
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