mRNA_S-dermatodea_contig837.16544.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig837.16544.1
Unique NamemRNA_S-dermatodea_contig837.16544.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig837.16544.1 vs. uniprot
Match: D7FPL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL2_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.380e-17
Identity = 52/80 (65.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 QVRVSVDLRAPPIKASDPVLREIFRSGMVEPGALDPRQVDILASTMAARMRPAGGGAV--------------SGPGFNGP 198
            QVRVSVDL+APPIKA +P++RE+FRSGMVEPGALDPRQ DILASTMA RMRP   G V                PGFNGP
Sbjct:  573 QVRVSVDLKAPPIKAGEPIIREVFRSGMVEPGALDPRQADILASTMAGRMRPPPPGVVPVPGPAVAVVPRDVGPPGFNGP 652
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig837.16544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPL2_ECTSI1.380e-1765.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig837contigS-dermatodea_contig837:4399..5461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1063
Cds size183
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig837.16544.1prot_S-dermatodea_contig837.16544.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig837 4480..4662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.438901-UTR-S-dermatodea_contig837:4398..44791622925338.438901-UTR-S-dermatodea_contig837:4398..4479Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig837 4399..4479 +
1694079865.5851967-UTR-S-dermatodea_contig837:4398..44791694079865.5851967-UTR-S-dermatodea_contig837:4398..4479Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig837 4399..4479 +
1622925338.4661746-UTR-S-dermatodea_contig837:4662..54611622925338.4661746-UTR-S-dermatodea_contig837:4662..5461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig837 4663..5461 +
1694079865.613649-UTR-S-dermatodea_contig837:4662..54611694079865.613649-UTR-S-dermatodea_contig837:4662..5461Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig837 4663..5461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.453182-CDS-S-dermatodea_contig837:4479..46621622925338.453182-CDS-S-dermatodea_contig837:4479..4662Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig837 4480..4662 +
1694079865.5999734-CDS-S-dermatodea_contig837:4479..46621694079865.5999734-CDS-S-dermatodea_contig837:4479..4662Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig837 4480..4662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig837.16544.1

>prot_S-dermatodea_contig837.16544.1 ID=prot_S-dermatodea_contig837.16544.1|Name=mRNA_S-dermatodea_contig837.16544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=61bp
MVEPGALDPRQVDILASTMAARMRPAGGGAVSGPGFNGPGASVGGGHMGM
GGTLARPVQF*
back to top

mRNA from alignment at S-dermatodea_contig837:4399..5461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig837.16544.1 ID=mRNA_S-dermatodea_contig837.16544.1|Name=mRNA_S-dermatodea_contig837.16544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1063bp|location=Sequence derived from alignment at S-dermatodea_contig837:4399..5461+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTCGAGTCTCGGTGGACCTTAGGGCTCCGCCGATTAAAGCCAGCGA
CCCTGTCCTCCGAGAAATCTTTCGAAGCGGCATGGTCGAACCGGGCGCGT
TAGACCCGCGGCAGGTGGACATCCTCGCTTCGACGATGGCGGCGCGAATG
CGACCGGCGGGAGGAGGAGCAGTTTCCGGACCAGGTTTCAACGGTCCTGG
TGCAAGCGTTGGTGGCGGGCACATGGGCATGGGTGGAACTTTGGCCAGGC
CTGTACAGTTTTAGCTTTTGGGGGTTGTGGAGTGGTGTTGTGTTGTGTTT
GTTGGTGTTTTGGACCCTGGTTGGTGCCTTGATTTGGGAGGGAGGCGTTT
GATTTGGTTCGTCGTTGATAGGTTTTTTTTTCTTCTCTATTGTGTTTTTC
TGGGGAGGAAGGAGCGGGGGGGTGGTTGCTTTCACCATGTTATGCACGCT
GGGATACCTTTTGTACCACGCTGAGGTTTTAGAAAACCACTAGTGTTTAC
ATAGCTTCACATATATGATGGAGTTTCGAAGGAGTGATATTTAGCCGACG
GTCTCGTGGGCTCAAGGGTGCGATAACGACGTTTATTGCGCCTGACCTCT
TTCGTGTTGCTGGGTGAGAGGAAGTAGTGTGATTATCCCGGTGGAACGTT
CGGCAAATAATGGGTTTTTGCTTGGCCTATGGCACCGATACCACCACACA
GCGTGTGTGAGTAGGGCGGTTTGAGAATCTGCGGTTAGCTTAGTTAAGCT
TGTTTTTTTGCGTGATACGTGCAAATTGGGGATGATGTTGCACACAATCG
TAGCACGTCGTTTCAGCGATACAACTAACTGCTGTAGGTCTATAAAGTTG
TCACGCCGTTGTTTGGTTTTTGGTGAGTTACACGGCCACCTTCGTAATCG
GTTCATTCAGCGTTGTTGATGAACAGGAGGTGCTTTCGCCGCCATCGTTT
GGGGGTTTTACGATAGGGCTACTACTAATACACACACTGTACTGTTTGCA
CCACTTTCTTGCTGTGTAATGATGCGACCAACGCGGCCAGTGTAGTTCGG
CACGAGCTTCTTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig837:4399..5461+

>mRNA_S-dermatodea_contig837.16544.1 ID=mRNA_S-dermatodea_contig837.16544.1|Name=mRNA_S-dermatodea_contig837.16544.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig837:4399..5461+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGAACCGGGCGCGTTAGACCCGCGGCAGGTGGACATCCTCGCTTC
GACGATGGCGGCGCGAATGCGACCGGCGGGAGGAGGAGCAGTTTCCGGAC
CAGGTTTCAACGGTCCTGGTGCAAGCGTTGGTGGCGGGCACATGGGCATG
GGTGGAACTTTGGCCAGGCCTGTACAGTTTTAGATGGTCGAACCGGGCGC
GTTAGACCCGCGGCAGGTGGACATCCTCGCTTCGACGATGGCGGCGCGAA
TGCGACCGGCGGGAGGAGGAGCAGTTTCCGGACCAGGTTTCAACGGTCCT
GGTGCAAGCGTTGGTGGCGGGCACATGGGCATGGGTGGAACTTTGGCCAG
GCCTGTACAGTTTTAG
back to top