mRNA_S-dermatodea_contig8367.16541.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8367.16541.1
Unique NamemRNA_S-dermatodea_contig8367.16541.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: D7FNL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL0_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 2.010e-102
Identity = 150/192 (78.12%), Postives = 166/192 (86.46%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHLACAEEGASMIPPRSRLR 576
            PANADNG+F+KLKYSSEPFQE ERF KTQPLSKRNLGFGTKDAFKRGEFTAT+RT+QYREML+QEQRLM+ASRN K + E + QAKAKHAS R FVEGKEEI+HLYDVGRSLQNEFNP +KHD+FY F+   GKRMGPYRTM+QDIG +AW+ RP APEFGPI H KNFYDRSHL  A E A M+ PR RLR
Sbjct:   45 PANADNGNFAKLKYSSEPFQETERFTKTQPLSKRNLGFGTKDAFKRGEFTATIRTQQYREMLRQEQRLMNASRNVKDEREKVAQAKAKHASSRRFVEGKEEIKHLYDVGRSLQNEFNPYRKHDAFYDFQKSTGKRMGPYRTMAQDIGNMAWDHRPTAPEFGPIGHIKNFYDRSHLEVAGEEAHMVQPRLRLR 236          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: D7G5S6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S6_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 8.130e-59
Identity = 95/176 (53.98%), Postives = 124/176 (70.45%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHLA 528
            P NA+NG+FS+L+Y SEP+ +ME+F+KTQPL KR LGFGTKDAF+ GEFTAT+RTEQYR++L+ E+ +M+  R+   D     + +   A  R F +G +EI+HLYDVGRS   EF+P    D FY     + KR GPYRTM+QDIG  AW     +PE GPI+H K FYD+SHL+
Sbjct:   36 PKNAENGNFSRLEYRSEPYADMEKFSKTQPLDKRKLGFGTKDAFRPGEFTATIRTEQYRDLLRAEKNIMEKHRDPAKDQAAAQKYEKDCAEHRAFPDGLKEIEHLYDVGRSQVTEFDPKNSRDRFYTLSIGQEKRRGPYRTMAQDIGSGAWGHTYQSPEHGPIHHVKFFYDKSHLS 211          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A836CAI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAI9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.590e-56
Identity = 97/175 (55.43%), Postives = 125/175 (71.43%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHL 525
            P NA+NG+FSKL+Y S  FQEMER++KTQP  K+  GFGTKDAF+RGEFTAT+RTEQYR+ L++EQ +M    +   D E++ +A+ K  S RTF EG  E  HLYDVGR+   +F+P    D FY     + +RMG +RTM+QDIG  AW  +  +PEFGPI+HTK F+DRSHL
Sbjct:   44 PVNAENGNFSKLEYKSCAFQEMERYSKTQPDRKK--GFGTKDAFRRGEFTATIRTEQYRDQLRKEQTIMAKFCDPVRDSEIIRRAEEKQRSTRTFCEGLPETDHLYDVGRTQVTKFDPKHSRDRFYTPDINRERRMGGFRTMAQDIGDGAWSHKYKSPEFGPIHHTKLFWDRSHL 216          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A7S2XZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZN8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.430e-47
Identity = 82/175 (46.86%), Postives = 116/175 (66.29%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHL 525
            PA   +G+F + KY  E ++EME + K+QP  +R  GFG+ DA +RGEFT+T+RTEQYRE LKQE R+ +  R+ +++ +V+  A A+    RTF EG  E +HLYD+G+    EF+P    D+FY  +  + KR+G + T SQ +G  AW+ +   PEFGPI + KNFYDRSHL
Sbjct:   47 PALKQSGYFEEFKYQPEEYKEMESYLKSQPQDRRKNGFGSHDATRRGEFTSTIRTEQYRETLKQELRVHEKQRDPESERKVMAIA-AEREMGRTFTEGLTETRHLYDIGKKQVTEFDPRSSRDTFYVMRKDRPKRLGAHTTSSQAVGDGAWDHKYTKPEFGPIPYVKNFYDRSHL 220          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A6V1R9I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R9I1_HETAK)

HSP 1 Score: 161 bits (408), Expect = 1.260e-46
Identity = 82/175 (46.86%), Postives = 113/175 (64.57%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHL 525
            P   + G+F+K  Y+ +P++E   F K QP   R LGFGTKDA KRGEFTAT+RTEQYRE LK+EQR++D  R+  A+   L +A+ K    R+F EG  E + LYD+GR    +F+P Q  D+FY  +  + KR+G ++T +  +G  AW+     PEFGPI + KNFYD+ HL
Sbjct:   44 PNPENGGYFAKKTYAPDPYKEAVHFIKEQPADSRKLGFGTKDASKRGEFTATIRTEQYRETLKKEQRILDHQRDPAAETMTLERAR-KREEERSFPEGLSETRRLYDIGRQNVTDFDPRQSRDTFYTLRKDRPKRLGHHQTAAAAVGSGAWDHEYSKPEFGPIPYVKNFYDKGHL 217          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A7S2CP23_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP23_9STRA)

HSP 1 Score: 138 bits (347), Expect = 3.120e-37
Identity = 78/189 (41.27%), Postives = 109/189 (57.67%), Query Frame = 1
Query:    1 PANADNGHFS----KLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPK-------GKRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHLACA 534
            P NA NG+F        Y+S+P++E   +   QP  KR +GFGTKDA KR EF AT+RTEQYRE LK+E  ++D  R+ + +  ++ + +   +    FV G  E ++LYD+GR+    FNP    D FY+ +  K         R+GPY T S  IG  AWE     P+FG ++ TKNF D+SHL+ A
Sbjct:   53 PKNAGNGYFGYNNKDFTYASDPYKETRSYKAEQPPEKRTMGFGTKDASKRDEFAATIRTEQYRETLKRENTILDEQRDREKEAALMEKLRNTKSE---FVPGLTETEYLYDIGRTQSTPFNPKSAGDRFYQRRLNKDLDPKQGSMRLGPYMTSSSQIGTGAWETPYSKPQFGTVSPTKNFNDKSHLSVA 238          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A7S2EF12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EF12_TRICV)

HSP 1 Score: 131 bits (329), Expect = 1.590e-34
Identity = 78/191 (40.84%), Postives = 114/191 (59.69%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEM-ERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKE--EIQHLYDVGRSLQNEFNPNQKHDSFYKFKT-----PKGK------RMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHLAC 531
            P NA NG F K +Y+ +P+ E  E+++KTQPL KR LGFG+ DAFK GEFT+   TE+YR +++QEQ+L+D+ R+   + E++ + + +  +      GK+  E + LYDVGR+    ++P    DSFYK        PK K      R+G +R MS  IG  AW  +   PEFG + + + FYDR H+ C
Sbjct:   48 PKNAYNGLFVKPQYTPDPYTERAEQYSKTQPLEKRRLGFGSHDAFKPGEFTSDKATERYRNVVRQEQKLLDSVRDEMRERELIQKLRDRPRTTPKDKLGKDLKEPKFLYDVGRTHVTLYSPQSTRDSFYKLPKHAPVDPKLKGLDPIRRLGSHRPMSASIGEQAWRHKYAKPEFGQVKYIEKFYDRGHIEC 238          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A8J2SVQ1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SVQ1_9STRA)

HSP 1 Score: 122 bits (306), Expect = 8.170e-31
Identity = 76/192 (39.58%), Postives = 106/192 (55.21%), Query Frame = 1
Query:    1 PANADNGHFSKL----KYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADL-EVLVQAKAKHASLRTFVEGKEEI------QHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRM--GPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHLACAE 537
            P NA NG+F  +     Y  + + E   +AKTQP   R LGFGT DA KR EFT  VRTEQYR++LK+E+R++  +   +  L E + +A  K A      E + E+        LYD+GRS + +F+P  K D FY     + + M  G YR+MSQDIG  AW+ +     FG  + T  FY +SH+ C +
Sbjct:   76 PKNAGNGYFGNMGKPFMYMPDKYVEQLPYAKTQPYDTRKLGFGTHDASKRDEFTDRVRTEQYRDLLKREKRILQRNEQKRGGLAEQIRKAHKKLAEAAVEEERQREVCGLSAAPFLYDIGRSRETQFDPKTKTDCFYNAYQARKREMRRGGYRSMSQDIGDGAWDLQQKRETFGRSHATAAFYSKSHIECGD 267          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: A0A482RVI8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVI8_9ARCH)

HSP 1 Score: 119 bits (297), Expect = 8.140e-30
Identity = 70/182 (38.46%), Postives = 103/182 (56.59%), Query Frame = 1
Query:    1 PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKA------KHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPY-RTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHL 525
            P NA+ G+F+K  Y  E ++E  ++  TQPL +R LGFGTKDA KR EF++  RTEQYRE L++E+ + ++    K  L  L+  +A      +     T   G + I+  YD+GR+   +FNP    D FY+F    G+  G   + +S ++G  AWE +   P FG     KNF+D+SHL
Sbjct:   50 PQNAELGYFTKKSYVPEGYKEGIKYITTQPLDQRKLGFGTKDAHKRDEFSSNNRTEQYRETLRKEKEMAESPEVVKEKLTKLLAERATMDFATQTRYTNTLSGGPKRIRQ-YDIGRTQVTDFNPKATRDKFYRFDEEHGRYFGDLAQPISCEVGAAAWETQYRPPAFGGKGEVKNFFDKSHL 230          
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Match: H3HED5_PHYRM (Uncharacterized protein n=19 Tax=Phytophthora TaxID=4783 RepID=H3HED5_PHYRM)

HSP 1 Score: 107 bits (268), Expect = 1.250e-25
Identity = 67/173 (38.73%), Postives = 93/173 (53.76%), Query Frame = 1
Query:   16 NGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFTATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKEEIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKG---KRMGPYRTMSQDIGGLAWEQRPHAPEFGPINHTKNFYDRSHL 525
            +G+F K  YSS+P Q+   + K+QP+  R  GFG+KDA +R EF + +RTEQYRE L  E +++D  +    D   L  A        TF EG +E +HLYD+GRS   EFN     D+FY  +       +  GP+   S+ IG  A +   + P     + TK FYD SHL
Sbjct:   52 SGYFDKKTYSSDPLQDNTAYLKSQPMDSRKSGFGSKDASRRDEFMSHIRTEQYRETLHTEVKILDKQKQN--DPPGLFDALDSLNQSHTFPEGLQETKHLYDIGRSQNTEFNQKSHRDTFYTMRVGNSQYKRNNGPFMLTSESIGLGADDVTGNRPNPKGAS-TKQFYDHSHL 221          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8367.16541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FNL0_ECTSI2.010e-10278.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5S6_ECTSI8.130e-5953.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAI9_9STRA2.590e-5655.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XZN8_9STRA9.430e-4746.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1R9I1_HETAK1.260e-4646.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CP23_9STRA3.120e-3741.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2EF12_TRICV1.590e-3440.84Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J2SVQ1_9STRA8.170e-3139.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482RVI8_9ARCH8.140e-3038.46Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
H3HED5_PHYRM1.250e-2538.73Uncharacterized protein n=19 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8367contigS-dermatodea_contig8367:5232..8333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue4.3e-82
Seed eggNOG ortholog2880.D7FNL0
EggNOG OGs290NK@1,2S4NB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_005080.1
Exons5
Model size579
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8367.16541.1prot_S-dermatodea_contig8367.16541.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8367 5232..8333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.194842-CDS-S-dermatodea_contig8367:5231..54201622925338.194842-CDS-S-dermatodea_contig8367:5231..5420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 5232..5420 -
1694079865.3499575-CDS-S-dermatodea_contig8367:5231..54201694079865.3499575-CDS-S-dermatodea_contig8367:5231..5420Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 5232..5420 -
1622925338.2094078-CDS-S-dermatodea_contig8367:6272..64341622925338.2094078-CDS-S-dermatodea_contig8367:6272..6434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 6273..6434 -
1694079865.369576-CDS-S-dermatodea_contig8367:6272..64341694079865.369576-CDS-S-dermatodea_contig8367:6272..6434Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 6273..6434 -
1622925338.223803-CDS-S-dermatodea_contig8367:6939..69911622925338.223803-CDS-S-dermatodea_contig8367:6939..6991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 6940..6991 -
1694079865.3795063-CDS-S-dermatodea_contig8367:6939..69911694079865.3795063-CDS-S-dermatodea_contig8367:6939..6991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 6940..6991 -
1622925338.2343075-CDS-S-dermatodea_contig8367:7807..79231622925338.2343075-CDS-S-dermatodea_contig8367:7807..7923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 7808..7923 -
1694079865.3909743-CDS-S-dermatodea_contig8367:7807..79231694079865.3909743-CDS-S-dermatodea_contig8367:7807..7923Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 7808..7923 -
1622925338.2467418-CDS-S-dermatodea_contig8367:8273..83331622925338.2467418-CDS-S-dermatodea_contig8367:8273..8333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 8274..8333 -
1694079865.4017618-CDS-S-dermatodea_contig8367:8273..83331694079865.4017618-CDS-S-dermatodea_contig8367:8273..8333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 8274..8333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8367.16541.1

>prot_S-dermatodea_contig8367.16541.1 ID=prot_S-dermatodea_contig8367.16541.1|Name=mRNA_S-dermatodea_contig8367.16541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=193bp
PANADNGHFSKLKYSSEPFQEMERFAKTQPLSKRNLGFGTKDAFKRGEFT
ATVRTEQYREMLKQEQRLMDASRNTKADLEVLVQAKAKHASLRTFVEGKE
EIQHLYDVGRSLQNEFNPNQKHDSFYKFKTPKGKRMGPYRTMSQDIGGLA
WEQRPHAPEFGPINHTKNFYDRSHLACAEEGASMIPPRSRLR*
back to top

mRNA from alignment at S-dermatodea_contig8367:5232..8333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8367.16541.1 ID=mRNA_S-dermatodea_contig8367.16541.1|Name=mRNA_S-dermatodea_contig8367.16541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3102bp|location=Sequence derived from alignment at S-dermatodea_contig8367:5232..8333- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCTAATGCCGACAATGGCCACTTTTCCAAGCTCAAGTACTCTTCCGA GCCCTTCCAGGTGAGTGTTGGCGGAGTTGGTGCTTGTTCGGGGAGGTCGT GATCGCGTATCAGTAGGCAGCCAAATTTGATGAACTACCAAACCTGGTTG TTGTCGCGTCTTGCAACAAGCTATCTATCGACAGGTGCTACATGCACTGC AGCTACTTGCCGTTCCGGCAGTGAGCGGCCTGTCGATCCGTCTCACTCCG TCGCTGTGCAGCATGTTAGTGTGCCTTCACGCGCGGAAGTTGCCCTTGAG TCAGCCGATTCGTTTCAAATTTCCACCGCGGTAAAGCTCGTGGTCTCTGC CTTCATTTCCGGCTATTTCTTCACACCGTTTCCTCACCTGTCATTTCCGG CGGAGCGTAGGAGATGGAGCGATTCGCGAAGACGCAGCCGTTAAGCAAAC GCAACTTGGGGTTTGGTACTAAAGACGCCTTCAAGAGAGGGGAGTTTACG GCCACCGTTAGAACGGAACAGTACAGGTGCGACGTTCATCATTCACCACT GCCTGGATAGCACGGGGGATGAGTGACCAGGGGAAAGGGGGGAGGGGGGG GGGGGGGGGGGGGGGGTGTTGGGGTGAGGTGGTATGTGGGCTAGATCCCC GTACAGCAGTATTATCAGTTTGTTTCTGCGTGATTTCGTTGCATGCATTT TTCCTGGTNNNNNNNNNNAAGGACACAGAAAGGGGTGGCGATTCAATTTT CCCCGGGGGGGGGAGGGGGGGGGGGGTGTGGAGAGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGTGATCGTATGTAATGTGTTGCGTACTCATGACGCA TTATATTAATCCTTCATATCATTTTTTTTCTCCGCGCCCGCCTGGGTTCC CCAGCGTTCAGGCTCGTGACCCCCCGCCGAAGAGTGCTTGCGCTGCCAAC CCTCCCGCAGTTCCAAAGGGCACTCCGTTTCGTGGTGTTGTGCGCGTTTG CTAGTTTCTTGAGCCAAATTCGTCAGAGAGCAGTTGACAGACAGGGCACG CAAAAAAAACACTGTCAGTACGAAGCCTGCGCTCTCGTGGTTTCCATACC GTAGTCTTGAGTGCTTTGTCGCAGTTTAGGTCAACCTATACAAACTAGCG CCGCCGCGTGCAGTACGGGTCGTGTCATACGCGGTTGACCGTCTGGCTAT TCCCTGCGCTACCAAGATGACAAGCTAATCTCAGTCGCACATTGTACGAG CACAACCACACCGCAACGCCACGGTTGGATCCGATGTTTCATAGAGTAGC TGCGGTTATTCATGCCTCACTGCCGCGTAAATCCACCCTCAGGGAAATGC TGAAGCAGGAGCAGCGATTGATGGACGCGTCGCGGAACACCAAGGTGAGC TCTGCTTCCATGGCGGGCGTTACCAATTATTGGGACGGACAGTCTTATGG AAGGCGTACAGTCTGCCTAGGGAAGCACACGTCAAACTCGCCGATCGGGA GAGGCAACGCAACCGTGTGCATGATTGGGTGTTGGTGGCTTTGTGTCTCG CGCCCAGATTTGGGGAGTGTGTCGGGCTCGCTGGTTTCGCATTTTGCAAC AGTGTCAGACAGCATCGAAGTCCGTTTACTTCGGCCGCACTCTTGGCGCG TGTTCACGAGAGTTAACACTGTATGGAGTATCGTGTAACCATTTCTGTGG CAAACGCTAAAATGAGATTTCCCTCCCTGTGGTTTAGATCATTACATTTC CCGGTAGGGTGAGTGTCATCGACGTATGTGTCACACTGTAAGTGGCTACT TTAACAACGTTGTAAAACATTTCGATACGATGCTTTACGCTCGTCAGCTT AACGATGCATGTTGCTTGAAACTCAATGTCCCGAATTCAAATAAGGAAGG CAGATCTCGAGGTGTTGGTGCAAGCAAAGGCTAAGCACGCCTCTTTGAGG ACGTTCGTGGAGGGCAAGGAGGAAATACAGCATCTCTACGACGTCGGCCG CTCCCTGCAGAACGAGTTTAACCCCAACCAAAAGCACGACTCCTTCTACA AATTTAAAACGGTGTGTGCCACCCCGTTACCGACTAATAAACGTACCGAA TCGCGGTGTTTGCATGCCAGATATTTCGTATTCACTGCATCTCTGTTGCA AGGGCGAAGGGGTATGGAGGATTCACATGGCAGCTTCCCCGCAAGCGTCT ATCGCATGGCCCACGTTTCTCCTTAAATTCAGGCCCGGTTTGAGTTGGCG AGATTATCGCGAATTCAGCGTGCCGTTGCACCCATAGATATGTACGTTGG TGGGGCATCCGAGCGGAGCATCTCAGATTTGAGCACGTGAGCCGTGTATT TTAGGAAGCAAATCCTCGGCAAAAGCACTTCGGAGCGGAAGAAGGAGATC TCCGTTGGCGCGAAAGACCTTGGAATATATCGCTTTGTCTGGTTCGCTAT GAATAGAGCGCTGCAAGGAAAACTTCCGCTCTATGGTCAGTTTTCGAGTT CAGGTAATTTGCGATGAGTTCCCAACTGTCCGTTTGCCGGGTTTAGTGCT CCGGGAGAATCGGGGTAGCGGAAGAGCTAGAACGGTGCCGCGAGAATGAA AGCGGCCACTTAAACTTCGCCCTCGTGTCATACGCTCCTTATTAAAAGAG GATGGTAGCCATTAGGTGTTTACACGCCTGCTACTTAGGCATCGTCCTTA TACTTGTACACCGTTGCACGCGCGTGCACAAGAAGTACCGTCCTATGTTA TAAATAATCATCCCTGAAAAAGTAGCTAAAATAGGGACATGTCTGTAGTG CCCCGCCCTTTCTCCGGTCTGCGGTACATTGCCTGTTGACCTTAGTCCCC TCGTACGCTCCCCCCTTCAATATCCGCACTTTATCTCCTGCCGCGTTGTG GTGTTCGTTGCAGCCGAAAGGAAAACGCATGGGCCCTTATCGTACGATGT CGCAAGACATCGGGGGCTTAGCGTGGGAGCAACGCCCGCATGCTCCAGAA TTCGGTCCCATCAACCACACGAAGAATTTTTACGACCGCAGTCATCTCGC GTGCGCGGAAGAGGGCGCCAGCATGATTCCACCCCGGTCACGGCTGCGTT GA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8367:5232..8333-

>mRNA_S-dermatodea_contig8367.16541.1 ID=mRNA_S-dermatodea_contig8367.16541.1|Name=mRNA_S-dermatodea_contig8367.16541.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at S-dermatodea_contig8367:5232..8333- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTGCTAATGCCGACAATGGCCACTTTTCCAAGCTCAAGTACTCTTCCGA
GCCCTTCCAGCCTGCTAATGCCGACAATGGCCACTTTTCCAAGCTCAAGT
ACTCTTCCGAGCCCTTCCAGGAGATGGAGCGATTCGCGAAGACGCAGCCG
TTAAGCAAACGCAACTTGGGGTTTGGTACTAAAGACGCCTTCAAGAGAGG
GGAGTTTACGGCCACCGTTAGAACGGAACAGTACAGGAGATGGAGCGATT
CGCGAAGACGCAGCCGTTAAGCAAACGCAACTTGGGGTTTGGTACTAAAG
ACGCCTTCAAGAGAGGGGAGTTTACGGCCACCGTTAGAACGGAACAGTAC
AGGGAAATGCTGAAGCAGGAGCAGCGATTGATGGACGCGTCGCGGAACAC
CAAGGGAAATGCTGAAGCAGGAGCAGCGATTGATGGACGCGTCGCGGAAC
ACCAAGGCAGATCTCGAGGTGTTGGTGCAAGCAAAGGCTAAGCACGCCTC
TTTGAGGACGTTCGTGGAGGGCAAGGAGGAAATACAGCATCTCTACGACG
TCGGCCGCTCCCTGCAGAACGAGTTTAACCCCAACCAAAAGCACGACTCC
TTCTACAAATTTAAAACGGCAGATCTCGAGGTGTTGGTGCAAGCAAAGGC
TAAGCACGCCTCTTTGAGGACGTTCGTGGAGGGCAAGGAGGAAATACAGC
ATCTCTACGACGTCGGCCGCTCCCTGCAGAACGAGTTTAACCCCAACCAA
AAGCACGACTCCTTCTACAAATTTAAAACGCCGAAAGGAAAACGCATGGG
CCCTTATCGTACGATGTCGCAAGACATCGGGGGCTTAGCGTGGGAGCAAC
GCCCGCATGCTCCAGAATTCGGTCCCATCAACCACACGAAGAATTTTTAC
GACCGCAGTCATCTCGCGTGCGCGGAAGAGGGCGCCAGCATGATTCCACC
CCGGTCACGGCTGCGTTGACCGAAAGGAAAACGCATGGGCCCTTATCGTA
CGATGTCGCAAGACATCGGGGGCTTAGCGTGGGAGCAACGCCCGCATGCT
CCAGAATTCGGTCCCATCAACCACACGAAGAATTTTTACGACCGCAGTCA
TCTCGCGTGCGCGGAAGAGGGCGCCAGCATGATTCCACCCCGGTCACGGC
TGCGTTGA
back to top