mRNA_S-dermatodea_contig8367.16540.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8367.16540.1
Unique NamemRNA_S-dermatodea_contig8367.16540.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8367.16540.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.890e-112
Identity = 222/527 (42.13%), Postives = 271/527 (51.42%), Query Frame = 1 
Query:    1 LDGVFGVESAQLASLLLAMFCLAVAPATCAVFLKAFFSDKLQACLQND--RHFAGVFFVLAIKSIPVPARSTRNWCAGRRVHVATAGSPSNVD--------------------ADDIEGRTEDRDNAQRAPLGGEIRSQHKASPVNERHGDGRKDAPEGRPIGGNPSGNQGEGKKGGSSRLSMLELPPRHWMCTTCKKVNILPEKWDGRPEKAIQLVVKRKVVDKQALYGAFKTKFRVPQCAKCQTPFNYTWRNGGPDDRGQQQ---------------------ALGSNTFSAQASA---------GGMGRAVDDNAV-------------------------------------PELWYGRGFRRQLKTYFKPELERPSLSLRGGRYSVGARVACFAGKEAWYPGTVVASRDNNTYDVRYDNGDIAEHVFPHMVRFEPTRTYSGLLCFYYGLALASAVVWPLTGFEYFSGTGSRTEGAL-----IALPALVIGAAGVVAVAAQFWILYGENKGAGPCVAARYATI 1299
            +DG   VE   LA+LLL MF  A  PA  A  LK FFS +L++ L  D  R F GVFF LA K++ VPA         RRVH     + S                          I G  ++  + QRAPLGG    +                           S N+     GG+ + + L+LPPRHWMCT CKKVN+LP++W+GR  K + +V+KRK VD +A+YG FKTK  VP C+KC+TPFNY+WRNGG  D   QQ                     A GS T  A ++A         GG+  A     V                                     PELWYGR FRRQL TYFKPEL RP+    G RY VGARVACFAGK+AWYPG V ASR+N+TYDVRYDNGDIA+HVF HM+RFEP    S L C YYGLALA+A  WPL G  YFS T +           +ALPALV+G AG +AVA QFW +Y +N+  G CVA ++A +
Sbjct:    1 MDGAIPVERTHLAALLLVMFAAAAVPAVLAAVLKMFFSVRLRSSLVRDDRRRFVGVFFFLATKAVSVPAFCGGGRLCERRVHALKDDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEEGDLQRAPLGGSSGRRXXXXXXXXXXXXXXXXX-----XXXXXSANRLA--DGGTRKRTELDLPPRHWMCTVCKKVNMLPDEWNGRAGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCRTPFNYSWRNGGGSDNLMQQRQQRLLDAALSRPTNAASTAVAAGSATDPALSAAVDGPMDAENGGVAAAAVHRRVLAKAARFIRALCSPCRRRRAASSKPFDGRGGSDAVEEPELWYGREFRRQLMTYFKPELSRPAAG--GERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAAXXXXXXXXXXVALPALVVGTAGTLAVAFQFWEIYADNRSTGLCVATKFAAV 518
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BLAST of mRNA_S-dermatodea_contig8367.16540.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 6.650e-68
Identity = 120/199 (60.30%), Postives = 142/199 (71.36%), Query Frame = 1 
Query:  718 QQQALGSNTFSAQASAGGMGRAVDDNAVPELWYGRGFRRQLKTYFKPELERPSLSLRGGRYSVGARVACFAGKEAWYPGTVVASRDNNTYDVRYDNGDIAEHVFPHMVRFEPTRTYSGLLCFYYGLALASAVVWPLTGFEYFSGTGSRTEGA-----LIALPALVIGAAGVVAVAAQFWILYGENKGAGPCVAARYATI 1299
            +++A  S TF  +  A     AV++   PELWYGR FRRQL TYFKPEL RP+ S  GGRY VGARVACFAGK+AWYPG V ASR+NNTYDVRYDNGDIA+HVF HM+RFEP    S L C YYGLALA+A  WPL G  YFS T + T+ A     L+ALPALV+G AG +AVA Q W +Y +N+  G CVA ++A I
Sbjct:  136 RRRAASSKTFDGRGGAD----AVEE---PELWYGREFRRQLMTYFKPELSRPAAS--GGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAATDAATSAAALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVI 325
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8367.16540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ8_ECTSI1.890e-11242.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3X8_9PHAE6.650e-6860.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8367contigS-dermatodea_contig8367:915..2758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004610.1
Exons3
Model size1299
Cds size1299
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8367.16540.1prot_S-dermatodea_contig8367.16540.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8367 915..2758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.1212704-CDS-S-dermatodea_contig8367:914..10701622925338.1212704-CDS-S-dermatodea_contig8367:914..1070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 915..1070 +
1694079865.322127-CDS-S-dermatodea_contig8367:914..10701694079865.322127-CDS-S-dermatodea_contig8367:914..1070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 915..1070 +
1622925338.1387854-CDS-S-dermatodea_contig8367:1373..17451622925338.1387854-CDS-S-dermatodea_contig8367:1373..1745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 1374..1745 +
1694079865.3298573-CDS-S-dermatodea_contig8367:1373..17451694079865.3298573-CDS-S-dermatodea_contig8367:1373..1745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 1374..1745 +
1622925338.152949-CDS-S-dermatodea_contig8367:1987..27581622925338.152949-CDS-S-dermatodea_contig8367:1987..2758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 1988..2758 +
1694079865.3414335-CDS-S-dermatodea_contig8367:1987..27581694079865.3414335-CDS-S-dermatodea_contig8367:1987..2758Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8367 1988..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8367.16540.1

>prot_S-dermatodea_contig8367.16540.1 ID=prot_S-dermatodea_contig8367.16540.1|Name=mRNA_S-dermatodea_contig8367.16540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=433bp
LDGVFGVESAQLASLLLAMFCLAVAPATCAVFLKAFFSDKLQACLQNDRH
FAGVFFVLAIKSIPVPARSTRNWCAGRRVHVATAGSPSNVDADDIEGRTE
DRDNAQRAPLGGEIRSQHKASPVNERHGDGRKDAPEGRPIGGNPSGNQGE
GKKGGSSRLSMLELPPRHWMCTTCKKVNILPEKWDGRPEKAIQLVVKRKV
VDKQALYGAFKTKFRVPQCAKCQTPFNYTWRNGGPDDRGQQQALGSNTFS
AQASAGGMGRAVDDNAVPELWYGRGFRRQLKTYFKPELERPSLSLRGGRY
SVGARVACFAGKEAWYPGTVVASRDNNTYDVRYDNGDIAEHVFPHMVRFE
PTRTYSGLLCFYYGLALASAVVWPLTGFEYFSGTGSRTEGALIALPALVI
GAAGVVAVAAQFWILYGENKGAGPCVAARYATI
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mRNA from alignment at S-dermatodea_contig8367:915..2758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8367.16540.1 ID=mRNA_S-dermatodea_contig8367.16540.1|Name=mRNA_S-dermatodea_contig8367.16540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1844bp|location=Sequence derived from alignment at S-dermatodea_contig8367:915..2758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGACGGCGTTTTCGGGGTGGAGAGCGCGCAGTTGGCGTCGTTGTTGTT
GGCCATGTTTTGTTTGGCGGTGGCGCCGGCAACGTGTGCGGTGTTCCTCA
AGGCCTTCTTTTCTGACAAACTCCAGGCGTGTCTTCAAAATGATCGGCAT
TTCGCGGTGAGTGGAGTGGGTCCACCCCGCGGCGAGCGTGTGGTGGTTGG
TATTTTGTCGATTAGTTTGGTTTCAGGCCGCCTATTCTCCACGCCCCCAA
TATATATGTATTGTGAGATGCATGGCGCCAGCAGAAACCCATCCGCCGAC
CCCTGTCCCGTTGTTTTCGTACTGTTCTGGTATCACTATACTTGTATAAC
GTTTGAAACGTTGTTCACTGGAAGGTTCTTTCAGTCCACATACATTTTCA
GCGCGGGTAAAAGGGTTAAGAACATCATCTCCTCTCGTCTCTGCACCGTT
CCCATCCAGGGCGTTTTCTTCGTGCTTGCCATCAAATCTATTCCGGTGCC
TGCTAGAAGCACCCGTAACTGGTGCGCTGGACGCAGAGTTCACGTCGCTA
CAGCCGGCAGTCCAAGCAACGTGGATGCGGACGATATTGAAGGACGTACC
GAAGATAGAGATAACGCACAACGAGCACCACTGGGCGGGGAGATTCGCAG
CCAACACAAAGCAAGTCCAGTCAACGAAAGGCACGGCGATGGCCGCAAGG
ATGCTCCAGAAGGTCGTCCAATCGGAGGAAACCCATCTGGAAATCAAGGC
GAAGGGAAGAAGGGAGGAAGCTCTAGATTGTCGATGCTCGAGCTGCCGCC
GAGGCATTGGATGTGCACCACGTGCAAAAAGGTCAGGCTTTGTGAACGTC
TTGGTGGTATTTTGTACCATCCTACTCCGATTCCGTGGTACAGCTATACG
TAAACCCAATCACATGGAGATAAATGACCATATGTTCCGGGCCGGACGTG
CGATACTGCCTAACAAACGTGAATCCGCTTGCATCACTTCCCTAAAACCC
TAGCAGAGCTACTTGTATCAACACATCACCACAACGCCGGGGGGCGCCAA
CCCAACTTGTATCCTAACCCAAGGTGAACATCTTGCCCGAAAAATGGGAT
GGACGGCCCGAGAAGGCCATTCAACTTGTCGTCAAGCGCAAGGTTGTGGA
CAAACAGGCCCTGTACGGGGCCTTCAAAACTAAATTCCGCGTGCCACAGT
GTGCCAAGTGTCAAACGCCCTTCAACTACACCTGGAGAAACGGAGGCCCA
GACGACCGTGGGCAGCAACAAGCTCTAGGGTCGAACACGTTTTCCGCGCA
AGCATCAGCGGGGGGAATGGGCAGAGCCGTCGATGACAACGCGGTGCCGG
AGCTTTGGTACGGAAGGGGATTTCGCCGCCAGCTGAAGACCTACTTTAAG
CCGGAGCTCGAGCGGCCCTCGTTGTCCCTGCGAGGGGGGCGGTACTCGGT
AGGCGCCAGGGTTGCGTGCTTCGCAGGAAAGGAAGCATGGTACCCAGGGA
CGGTGGTAGCCTCTCGAGATAACAATACATACGACGTCCGCTACGATAAC
GGAGACATCGCCGAGCATGTCTTCCCGCACATGGTCCGATTTGAGCCGAC
CCGCACATACTCCGGACTCCTCTGCTTCTACTACGGTCTGGCTCTCGCGT
CCGCAGTAGTGTGGCCACTCACGGGCTTCGAATACTTTTCTGGCACCGGG
TCGAGAACAGAAGGCGCTCTAATTGCCTTGCCAGCTCTTGTGATAGGCGC
GGCCGGGGTCGTGGCCGTGGCTGCTCAATTTTGGATTCTCTATGGGGAGA
ACAAAGGCGCTGGGCCGTGCGTCGCCGCTCGATACGCGACGATA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8367:915..2758+

>mRNA_S-dermatodea_contig8367.16540.1 ID=mRNA_S-dermatodea_contig8367.16540.1|Name=mRNA_S-dermatodea_contig8367.16540.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2598bp|location=Sequence derived from alignment at S-dermatodea_contig8367:915..2758+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGACGGCGTTTTCGGGGTGGAGAGCGCGCAGTTGGCGTCGTTGTTGTT
GGCCATGTTTTGTTTGGCGGTGGCGCCGGCAACGTGTGCGGTGTTCCTCA
AGGCCTTCTTTTCTGACAAACTCCAGGCGTGTCTTCAAAATGATCGGCAT
TTCGCGTTGGACGGCGTTTTCGGGGTGGAGAGCGCGCAGTTGGCGTCGTT
GTTGTTGGCCATGTTTTGTTTGGCGGTGGCGCCGGCAACGTGTGCGGTGT
TCCTCAAGGCCTTCTTTTCTGACAAACTCCAGGCGTGTCTTCAAAATGAT
CGGCATTTCGCGGGCGTTTTCTTCGTGCTTGCCATCAAATCTATTCCGGT
GCCTGCTAGAAGCACCCGTAACTGGTGCGCTGGACGCAGAGTTCACGTCG
CTACAGCCGGCAGTCCAAGCAACGTGGATGCGGACGATATTGAAGGACGT
ACCGAAGATAGAGATAACGCACAACGAGCACCACTGGGCGGGGAGATTCG
CAGCCAACACAAAGCAAGTCCAGTCAACGAAAGGCACGGCGATGGCCGCA
AGGATGCTCCAGAAGGTCGTCCAATCGGAGGAAACCCATCTGGAAATCAA
GGCGAAGGGAAGAAGGGAGGAAGCTCTAGATTGTCGATGCTCGAGCTGCC
GCCGAGGCATTGGATGTGCACCACGTGCAAAAAGGGCGTTTTCTTCGTGC
TTGCCATCAAATCTATTCCGGTGCCTGCTAGAAGCACCCGTAACTGGTGC
GCTGGACGCAGAGTTCACGTCGCTACAGCCGGCAGTCCAAGCAACGTGGA
TGCGGACGATATTGAAGGACGTACCGAAGATAGAGATAACGCACAACGAG
CACCACTGGGCGGGGAGATTCGCAGCCAACACAAAGCAAGTCCAGTCAAC
GAAAGGCACGGCGATGGCCGCAAGGATGCTCCAGAAGGTCGTCCAATCGG
AGGAAACCCATCTGGAAATCAAGGCGAAGGGAAGAAGGGAGGAAGCTCTA
GATTGTCGATGCTCGAGCTGCCGCCGAGGCATTGGATGTGCACCACGTGC
AAAAAGGTGAACATCTTGCCCGAAAAATGGGATGGACGGCCCGAGAAGGC
CATTCAACTTGTCGTCAAGCGCAAGGTTGTGGACAAACAGGCCCTGTACG
GGGCCTTCAAAACTAAATTCCGCGTGCCACAGTGTGCCAAGTGTCAAACG
CCCTTCAACTACACCTGGAGAAACGGAGGCCCAGACGACCGTGGGCAGCA
ACAAGCTCTAGGGTCGAACACGTTTTCCGCGCAAGCATCAGCGGGGGGAA
TGGGCAGAGCCGTCGATGACAACGCGGTGCCGGAGCTTTGGTACGGAAGG
GGATTTCGCCGCCAGCTGAAGACCTACTTTAAGCCGGAGCTCGAGCGGCC
CTCGTTGTCCCTGCGAGGGGGGCGGTACTCGGTAGGCGCCAGGGTTGCGT
GCTTCGCAGGAAAGGAAGCATGGTACCCAGGGACGGTGGTAGCCTCTCGA
GATAACAATACATACGACGTCCGCTACGATAACGGAGACATCGCCGAGCA
TGTCTTCCCGCACATGGTCCGATTTGAGCCGACCCGCACATACTCCGGAC
TCCTCTGCTTCTACTACGGTCTGGCTCTCGCGTCCGCAGTAGTGTGGCCA
CTCACGGGCTTCGAATACTTTTCTGGCACCGGGTCGAGAACAGAAGGCGC
TCTAATTGCCTTGCCAGCTCTTGTGATAGGCGCGGCCGGGGTCGTGGCCG
TGGCTGCTCAATTTTGGATTCTCTATGGGGAGAACAAAGGCGCTGGGCCG
TGCGTCGCCGCTCGATACGCGACGATAGTGAACATCTTGCCCGAAAAATG
GGATGGACGGCCCGAGAAGGCCATTCAACTTGTCGTCAAGCGCAAGGTTG
TGGACAAACAGGCCCTGTACGGGGCCTTCAAAACTAAATTCCGCGTGCCA
CAGTGTGCCAAGTGTCAAACGCCCTTCAACTACACCTGGAGAAACGGAGG
CCCAGACGACCGTGGGCAGCAACAAGCTCTAGGGTCGAACACGTTTTCCG
CGCAAGCATCAGCGGGGGGAATGGGCAGAGCCGTCGATGACAACGCGGTG
CCGGAGCTTTGGTACGGAAGGGGATTTCGCCGCCAGCTGAAGACCTACTT
TAAGCCGGAGCTCGAGCGGCCCTCGTTGTCCCTGCGAGGGGGGCGGTACT
CGGTAGGCGCCAGGGTTGCGTGCTTCGCAGGAAAGGAAGCATGGTACCCA
GGGACGGTGGTAGCCTCTCGAGATAACAATACATACGACGTCCGCTACGA
TAACGGAGACATCGCCGAGCATGTCTTCCCGCACATGGTCCGATTTGAGC
CGACCCGCACATACTCCGGACTCCTCTGCTTCTACTACGGTCTGGCTCTC
GCGTCCGCAGTAGTGTGGCCACTCACGGGCTTCGAATACTTTTCTGGCAC
CGGGTCGAGAACAGAAGGCGCTCTAATTGCCTTGCCAGCTCTTGTGATAG
GCGCGGCCGGGGTCGTGGCCGTGGCTGCTCAATTTTGGATTCTCTATGGG
GAGAACAAAGGCGCTGGGCCGTGCGTCGCCGCTCGATACGCGACGATA
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