mRNA_S-dermatodea_contig83602.16536.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83602.16536.1
Unique NamemRNA_S-dermatodea_contig83602.16536.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83602.16536.1 vs. uniprot
Match: A0A6H5L1E0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E0_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.530e-13
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:   10 GPLPPLPEECGADTHPVVVLRNVYTREEVDSDPNFYDDLE 129
            G LPPLPEECGAD HPVVVLR+VYTREE ++DP+F+DDLE
Sbjct:  498 GALPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLE 537
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BLAST of mRNA_S-dermatodea_contig83602.16536.1 vs. uniprot
Match: D7FR18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR18_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.310e-13
Identity = 31/38 (81.58%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   16 LPPLPEECGADTHPVVVLRNVYTREEVDSDPNFYDDLE 129
            LPPLPEECGAD HPVVVLR+VYTREE ++DP+F+DDLE
Sbjct:   89 LPPLPEECGADKHPVVVLRSVYTREESEADPHFFDDLE 126
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83602.16536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1E0_9PHAE2.530e-1380.00RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FR18_ECTSI5.310e-1381.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83602contigS-dermatodea_contig83602:558..686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size129
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.888827-CDS-S-dermatodea_contig83602:557..6861622925337.888827-CDS-S-dermatodea_contig83602:557..686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83602 558..686 +
1694079865.1840987-CDS-S-dermatodea_contig83602:557..6861694079865.1840987-CDS-S-dermatodea_contig83602:557..686Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83602 558..686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83602.16536.1prot_S-dermatodea_contig83602.16536.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83602 558..686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83602.16536.1

>prot_S-dermatodea_contig83602.16536.1 ID=prot_S-dermatodea_contig83602.16536.1|Name=mRNA_S-dermatodea_contig83602.16536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=43bp
MELGPLPPLPEECGADTHPVVVLRNVYTREEVDSDPNFYDDLE
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mRNA from alignment at S-dermatodea_contig83602:558..686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83602.16536.1 ID=mRNA_S-dermatodea_contig83602.16536.1|Name=mRNA_S-dermatodea_contig83602.16536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at S-dermatodea_contig83602:558..686+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTTGGGGCCCCTTCCCCCGCTTCCGGAAGAGTGCGGCGCGGACAC
GCACCCGGTGGTGGTGCTGCGGAACGTTTACACGAGAGAGGAAGTTGATT
CGGACCCCAACTTCTACGACGATTTGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83602:558..686+

>mRNA_S-dermatodea_contig83602.16536.1 ID=mRNA_S-dermatodea_contig83602.16536.1|Name=mRNA_S-dermatodea_contig83602.16536.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at S-dermatodea_contig83602:558..686+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGTTGGGGCCCCTTCCCCCGCTTCCGGAAGAGTGCGGCGCGGACAC
GCACCCGGTGGTGGTGCTGCGGAACGTTTACACGAGAGAGGAAGTTGATT
CGGACCCCAACTTCTACGACGATTTGGAGATGGAGTTGGGGCCCCTTCCC
CCGCTTCCGGAAGAGTGCGGCGCGGACACGCACCCGGTGGTGGTGCTGCG
GAACGTTTACACGAGAGAGGAAGTTGATTCGGACCCCAACTTCTACGACG
ATTTGGAG
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