mRNA_S-dermatodea_contig8360.16535.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8360.16535.1
Unique NamemRNA_S-dermatodea_contig8360.16535.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU29_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.700e-28
Identity = 64/125 (51.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            R SASPATGLVGM+EN  L DFFGC+GF+PL + S IR AMV++M  S    Q G  H D   +     + T     P    S+ PSAC FW AV LG LV G P ESV  Y RLARD L++ +G
Sbjct:   27 RWSASPATGLVGMQENACLSDFFGCIGFMPLTTRSHIRGAMVRMMTSSTPHHQPGAPH-DSPAQGHFGSIFTEDGITPGNQLSTGPSACTFWCAVGLGALVKGSPVESVVNYSRLARDALDAYTG 150
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BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU18_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.930e-28
Identity = 63/125 (50.40%), Postives = 80/125 (64.00%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RLSASPATGLVGM+EN  L DFFGCVG LPL +PS +R AMV++M  S   +Q G +H    Q    A+      T   +L +  PS C FW AV +G ++ GR +ESVA Y RLARD L++ +G
Sbjct:   62 RLSASPATGLVGMQENAFLNDFFGCVGLLPLTTPSHVRGAMVRMMTRSTAQQQLGALHDSPEQGQFGAIFAEDGITTGNQLLTG-PSCCTFWCAVGVGAIMKGRTAESVAKYSRLARDALDAYNG 185
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BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU24_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 1.300e-26
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RLSASPATGLVGM+ENT L DFFGCVGFLPL +PS IR  MV++M  S     R +   D   +     + +          S+ PSAC FW AV +G LV G P ESVA Y RLARD L++ +G
Sbjct:   27 RLSASPATGLVGMQENTFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLST-APHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTG 150
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BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LCV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.590e-26
Identity = 67/133 (50.38%), Postives = 83/133 (62.41%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDG---RQEVDNAMVP---TSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSGAP 382
            RLSASPATGLV M+ENT L DFFGC+GFLPL +PS IR  MV++M P  + +Q   +  DG   R     A+ P    S  +  ++LP  DPSAC FW AVALG LV G P ESV  Y +LA++ L   +  P
Sbjct:    8 RLSASPATGLVEMQENTFLSDFFGCIGFLPLTTPSQIRETMVKIMVPPASSQQ--SVFGDGSDKRGHYFEAVAPGGDLSKISAGSQLPM-DPSACTFWCAVALGALVKGSPIESVTSYAQLAQEALAKSNSGP 137
[Close]
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.510e-25
Identity = 65/125 (52.00%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RLSASPATGLVGM+EN  L DFFGCVGFLPL + S +R AMV++M  S    Q    H    Q    A+      T   +L S+ PSAC FW AV +G LV GRP+ESV  Y RLAR  L++ +G
Sbjct:   97 RLSASPATGLVGMQENAFLSDFFGCVGFLPLTTRSHVRGAMVRMMAHSAAQHQLRARHDTPDQGQFGAIFSEDGITTGNQL-STGPSACTFWCAVGVGALVKGRPAESVTIYSRLARGALDAYTG 220
[Close]
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU25_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.600e-25
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RL+ASPATGLVGM+EN  L DFFGCVGFLPL +PS IR  MV++M  S     R +   D   +     + +          S+ PSAC FW AV +G LV G P ESVA Y RLARD L++ +G
Sbjct:   27 RLNASPATGLVGMQENVFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLST-APHRPDASYDSLDQGQFGAIFSEDGITTGNQLSAGPSACTFWCAVGVGALVKGSPVESVANYSRLARDALDAYTG 150
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BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.710e-25
Identity = 64/125 (51.20%), Postives = 78/125 (62.40%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RLSASPATGLVGM+EN  L DFFGCVGFLPL +PS IR  MV++M  S    Q G  +    Q   +A++     T  ++L S+ PSAC FW AV +G LV G P E V  Y  LARD L + +G
Sbjct:  100 RLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRGEMVRMMTLSTAPHQLGASYDSPEQCQFDAILTEDGITTGSQL-STGPSACTFWCAVGVGALVNGSPVELVGNYSGLARDALNAYTG 223
[Close]
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LU19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU19_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.080e-25
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            RLSASPATGLVGM+EN  L DFFGCVG LPL +PS IR  MV++M      +Q G +H    Q    A+      T   +L +  PS C FW AV +G ++ G P ESVA Y RLARD L++  G
Sbjct:    8 RLSASPATGLVGMQENAFLSDFFGCVGLLPLTTPSHIRGVMVKMMTGPTVQQQLGALHDSLEQGQFGAIFSEDGITTGNQLLTG-PSCCTFWCAVGVGAVLKGSPVESVANYSRLARDALDAYKG 131
[Close]
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: D8LCV1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV1_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.930e-25
Identity = 66/132 (50.00%), Postives = 81/132 (61.36%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQR--GEIHLDGRQEVDNAMVP---TSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSGAP 382
            RLSASPATGLVGM+EN  L DFFGCVGFLPL +PS IR  MV +M P  + +Q   G+   +G    + A+ P    S T+   + P  DPSAC FW AVALG L  G P ESV  Y +LA++ L   +  P
Sbjct:   12 RLSASPATGLVGMQENAFLSDFFGCVGFLPLTTPSHIRETMVTIMLPRASSQQSVFGDDCDEGGHYFE-AVAPGGDLSKTSARNQFPM-DPSACTFWCAVALGALAKGSPIESVTSYAQLAQEALAKSNSGP 141
[Close]
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.070e-24
Identity = 61/125 (48.80%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:    2 RLSASPATGLVGMEENTLLCDFFGCVGFLPLASPSDIRYAMVQLMNPSNNVRQRGEIHLDGRQEVDNAMVPTSCTTQPARLPSSDPSACLFWGAVALGGLVLGRPSESVAGYFRLARDGLESLSG 376
            +LSASPATGLVGM+EN  L DFFGCVGF+P  S S IR AMV++M  S    Q G  H    Q            T P     + PS C FW AV +G L  G P ESVA Y RLARD +++ +G
Sbjct:  100 KLSASPATGLVGMQENAFLSDFFGCVGFMPFTSRSHIRGAMVRMMARSTAQHQPGARHNSPEQSQFGDTFTEDGIT-PGNQLLTGPSCCTFWCAVGMGALAKGSPVESVANYSRLARDAMDAYTG 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8360.16535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU29_ECTSI1.700e-2851.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU18_ECTSI4.930e-2850.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU24_ECTSI1.300e-2651.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV4_ECTSI1.590e-2650.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU27_ECTSI1.510e-2552.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU25_ECTSI1.600e-2549.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBJ1_9PHAE1.710e-2551.20Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU19_ECTSI2.080e-2549.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCV1_ECTSI4.930e-2550.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K8E7_9PHAE2.070e-2448.80Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8360contigS-dermatodea_contig8360:6301..7659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8360.16535.1prot_S-dermatodea_contig8360.16535.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8360 6301..7657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.8395758-CDS-S-dermatodea_contig8360:6300..64051622925337.8395758-CDS-S-dermatodea_contig8360:6300..6405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 6301..6405 +
1694079865.1491256-CDS-S-dermatodea_contig8360:6300..64051694079865.1491256-CDS-S-dermatodea_contig8360:6300..6405Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 6301..6405 +
1622925337.8528264-CDS-S-dermatodea_contig8360:7186..74061622925337.8528264-CDS-S-dermatodea_contig8360:7186..7406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 7187..7406 +
1694079865.1605875-CDS-S-dermatodea_contig8360:7186..74061694079865.1605875-CDS-S-dermatodea_contig8360:7186..7406Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 7187..7406 +
1622925337.8620868-CDS-S-dermatodea_contig8360:7595..76571622925337.8620868-CDS-S-dermatodea_contig8360:7595..7657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 7596..7657 +
1694079865.17339-CDS-S-dermatodea_contig8360:7595..76571694079865.17339-CDS-S-dermatodea_contig8360:7595..7657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8360 7596..7657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8360.16535.1

>prot_S-dermatodea_contig8360.16535.1 ID=prot_S-dermatodea_contig8360.16535.1|Name=mRNA_S-dermatodea_contig8360.16535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
QVERVASNWPGGDGGEHAFVRFFRLRWLPAARKPERHPLCDGTTHEPFEQ
RAATRRDPSRRETRGRQRHGADLLYHTASPASVVGSLRVFVLGRCSAWGI
GARSAFGIGGGLLPTGSGWAGELVGSPFR
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mRNA from alignment at S-dermatodea_contig8360:6301..7659+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8360.16535.1 ID=mRNA_S-dermatodea_contig8360.16535.1|Name=mRNA_S-dermatodea_contig8360.16535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1359bp|location=Sequence derived from alignment at S-dermatodea_contig8360:6301..7659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGAGCGCGTCGCCAGCAACTGGCCTGGTGGGGATGGAGGAGAACA
CGCTTTTGTGCGATTTTTTCGGCTGCGTTGGCTTCCTGCCGCTCGCAAGC
CCGAGGTGAGCCCCATTGATGGTACTGAGTGCAGTGGAGGTCTCGAGCCA
GTCACTGGTGGCACGCTTGATCGATTGGCTGATTGACTTTATTGATTTGA
TTGATTGATTGATTGATTGGTTGATTGTCGTGCATACAACCGACAACCGA
CCGGCCCGCCATTTTTGCAATTGCAAAAAAAGTGGATGCTGATCCCGCTA
AGTCGTGGTACCGTCACATGAAGGCAGCAGGCACAAGAGCAACTCAAATC
CAGCACACCTACACCGAACAAAATAATAATGCCCAGCAGCCGGCGATTCC
TCTGGCGTGCTGGCATGTTCGTGTGATAGGGGGCTATGCGTCCGTCGTTC
CCGCCCCTCGGCTGCATTTGAATCAAACACTCTTCTCCTCGCGGTGTCCG
GATGGCTTGAAACAATCGCTTTCCTCTCGGCCTTTGTTTCCATCGGCCTC
AGAGTCTCATGTCTACACCACATGTATTTTAGCTCCAGTGCAGCCTGCCG
TAGAGGCGATTACCAGAACGAGGAAGAATTGTATTTACCGCTGGTAAACA
GGCCTCCTCTAAAGTGACCTGACTATGTAGCCATTTGTGGTGTGTAAAGT
AGCATGGGCATCCACTTTCAGTCCCATACTCTAGTGTACATATATATCGT
GTAACAGGATGAGTATCTATACTTTCGGTCCCCTATACTAACATTGTGAA
GGTGGATATATACATATATATGGCTGCCAACTTCTTGATCGAGCTAGCTG
CTATTTTTCTGACCCTTTATTGCTTTGTCTCCACAGCGACATCCGCTATG
CGATGGTACAACTCATGAACCCTTCGAACAACGTGCGGCAACGAGGCGAG
ATCCATCTCGACGGGAGACAAGAGGTCGACAACGCCATGGTGCCGACCTC
CTGTACCACACAGCCAGCCCGGCTTCCGTCGTCGGATCCCTCCGCGTGTT
TGTTTTGGGGCGCTGTAGCGCTTGGGGGATTGGTGCTAGGTCGGCCTTCG
GAATCGGTGAGTTGCCGCACAGGTCTCAGGAATTCCTGGAGACTTCCATG
TCTATCTGTGTCCTCGACCTACTCAGTCCAGTAGTTGCGCATAACGACGT
GTGTAATGTTCATCTTGCTTCTGCACACGGCCCTCTCTTGCAATTAAACA
CTGTTAGTGCTTGCGCGTGTTTTGTGTGAATGCCACGCTCGGCAGGTGGC
GGGCTACTTCCGACTGGCTCGGGATGGGCTGGAGAGCTTGTCGGGAGCCC
CTTTCGCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8360:6301..7659+

>mRNA_S-dermatodea_contig8360.16535.1 ID=mRNA_S-dermatodea_contig8360.16535.1|Name=mRNA_S-dermatodea_contig8360.16535.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig8360:6301..7659+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTTGAGCGCGTCGCCAGCAACTGGCCTGGTGGGGATGGAGGAGAACA
CGCTTTTGTGCGATTTTTTCGGCTGCGTTGGCTTCCTGCCGCTCGCAAGC
CCGAGCAGGTTGAGCGCGTCGCCAGCAACTGGCCTGGTGGGGATGGAGGA
GAACACGCTTTTGTGCGATTTTTTCGGCTGCGTTGGCTTCCTGCCGCTCG
CAAGCCCGAGCGACATCCGCTATGCGATGGTACAACTCATGAACCCTTCG
AACAACGTGCGGCAACGAGGCGAGATCCATCTCGACGGGAGACAAGAGGT
CGACAACGCCATGGTGCCGACCTCCTGTACCACACAGCCAGCCCGGCTTC
CGTCGTCGGATCCCTCCGCGTGTTTGTTTTGGGGCGCTGTAGCGCTTGGG
GGATTGGTGCTAGGTCGGCCTTCGGAATCGCGACATCCGCTATGCGATGG
TACAACTCATGAACCCTTCGAACAACGTGCGGCAACGAGGCGAGATCCAT
CTCGACGGGAGACAAGAGGTCGACAACGCCATGGTGCCGACCTCCTGTAC
CACACAGCCAGCCCGGCTTCCGTCGTCGGATCCCTCCGCGTGTTTGTTTT
GGGGCGCTGTAGCGCTTGGGGGATTGGTGCTAGGTCGGCCTTCGGAATCG
GTGGCGGGCTACTTCCGACTGGCTCGGGATGGGCTGGAGAGCTTGTCGGG
AGCCCCTTTCGCGTGGCGGGCTACTTCCGACTGGCTCGGGATGGGCTGGA
GAGCTTGTCGGGAGCCCCTTTCGC
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