mRNA_S-dermatodea_contig83550.16534.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83550.16534.1
Unique NamemRNA_S-dermatodea_contig83550.16534.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83550.16534.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 2.150e-12
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   13 QRVVEVLVDSLSTCVTITGDPGSGKTEMAKQACLYVCERHRFDAIYYADWRK 168
            Q+VV +L+D  + CVTITG+PGSGKTE A QAC YV ERHRFD   +AD  K
Sbjct:  154 QQVVRLLLDERAACVTITGEPGSGKTERAIQACDYVRERHRFDCFLWADCDK 205
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BLAST of mRNA_S-dermatodea_contig83550.16534.1 vs. uniprot
Match: A0A6H5KH01_9PHAE (CHAT domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH01_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   13 QRVVEVLVDSLSTCVTITGDPGSGKTEMAKQACLYVCERHRFDAIYYADWR 165
            Q+VVE+LVD ++ CVT+TG+ GSGK+E A QAC YV  RH FDA+++AD +
Sbjct:  269 QKVVEMLVDPVTACVTVTGEHGSGKSERAIQACDYVRMRHHFDALWWADMK 319
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BLAST of mRNA_S-dermatodea_contig83550.16534.1 vs. uniprot
Match: A0A6H5KC67_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC67_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.910e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   13 QRVVEVLVDSLSTCVTITGDPGSGKTEMAKQACLYVCERHRFDAIYYADWRK 168
            Q VV +L+D  + CVT+TG+PGSGKTE+A QAC YV ERH FD+  +AD  K
Sbjct:  251 QFVVRLLLDPQTVCVTVTGEPGSGKTELAIQACDYVRERHHFDSFLWADCDK 302
[Close]
BLAST of mRNA_S-dermatodea_contig83550.16534.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.680e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:   13 QRVVEVLVDSLSTCVTITGDPGSGKTEMAKQACLYVCERHRFDAIYYADWRK 168
            Q VV +L+D  + CVT+TGDPGSGKTE+A QAC YV  RH F++  +AD  K
Sbjct:  267 QHVVRLLLDERAACVTVTGDPGSGKTELAIQACDYVRYRHHFNSFLWADCDK 318
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83550.16534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNY4_ECTSI2.150e-1263.46SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KH01_9PHAE1.400e-1158.82CHAT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KC67_9PHAE1.910e-1159.62SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNY6_ECTSI6.680e-1157.69SH2 domain containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83550contigS-dermatodea_contig83550:343..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue6.4e-10
Seed eggNOG ortholog2880.D7FNY4
GOsGO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0023052,GO:0030154,GO:0030587,GO:0031149,GO:0031150,GO:0031154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035556,GO:0042802,GO:0042803,GO:0043157,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0047484,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0080090,GO:0080134,GO:0090702,GO:0097159,GO:0097696,GO:0099120,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.STAT cascade
EggNOG OGsKOG3667@1,KOG3667@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.8037624-CDS-S-dermatodea_contig83550:342..5101622925337.8037624-CDS-S-dermatodea_contig83550:342..510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83550 343..510 -
1694079865.1363106-CDS-S-dermatodea_contig83550:342..5101694079865.1363106-CDS-S-dermatodea_contig83550:342..510Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83550 343..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83550.16534.1prot_S-dermatodea_contig83550.16534.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83550 343..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83550.16534.1

>prot_S-dermatodea_contig83550.16534.1 ID=prot_S-dermatodea_contig83550.16534.1|Name=mRNA_S-dermatodea_contig83550.16534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
NTAPQRVVEVLVDSLSTCVTITGDPGSGKTEMAKQACLYVCERHRFDAIY
YADWRK
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mRNA from alignment at S-dermatodea_contig83550:343..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83550.16534.1 ID=mRNA_S-dermatodea_contig83550.16534.1|Name=mRNA_S-dermatodea_contig83550.16534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig83550:343..510- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATACTGCACCACAGCGAGTGGTGGAGGTACTCGTGGACTCCCTGTCGAC
CTGTGTGACGATTACGGGCGATCCAGGGTCCGGCAAGACCGAGATGGCGA
AGCAGGCGTGCCTGTACGTCTGCGAGAGGCACCGGTTCGATGCGATTTAC
TACGCCGACTGGAGGAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig83550:343..510-

>mRNA_S-dermatodea_contig83550.16534.1 ID=mRNA_S-dermatodea_contig83550.16534.1|Name=mRNA_S-dermatodea_contig83550.16534.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig83550:343..510- (Saccorhiza dermatodea SderLu1190fm monoicous)
AATACTGCACCACAGCGAGTGGTGGAGGTACTCGTGGACTCCCTGTCGAC
CTGTGTGACGATTACGGGCGATCCAGGGTCCGGCAAGACCGAGATGGCGA
AGCAGGCGTGCCTGTACGTCTGCGAGAGGCACCGGTTCGATGCGATTTAC
TACGCCGACTGGAGGAAGAATACTGCACCACAGCGAGTGGTGGAGGTACT
CGTGGACTCCCTGTCGACCTGTGTGACGATTACGGGCGATCCAGGGTCCG
GCAAGACCGAGATGGCGAAGCAGGCGTGCCTGTACGTCTGCGAGAGGCAC
CGGTTCGATGCGATTTACTACGCCGACTGGAGGAAG
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