mRNA_S-dermatodea_contig8355.16533.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8355.16533.1
Unique NamemRNA_S-dermatodea_contig8355.16533.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 6.250e-30
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    1 AAAVAALDESVRGRLEGLVRPDELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRKHGSA 216
            AA VAALD  VRGRL  LV+PDELDPFEVRALGKF+ ADA+DILDRFAEADLRRVRNRSGFLAGIMRKHGSA
Sbjct:  998 AATVAALDADVRGRLSELVKPDELDPFEVRALGKFDTADALDILDRFAEADLRRVRNRSGFLAGIMRKHGSA 1069
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: A0A835ZCK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.410e-15
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    7 AVAALDESVRGRL-----EGLVRPDELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRKHGSAASTTKP 234
            A+ AL E VR  +     + L++  ELD FE+RAL +FE  DA+ IL+RFAEADLR+V N+SGFLAGIMRK+GS    T P
Sbjct: 1089 ALRALPEEVRAYIVKLQDDRLLKATELDAFELRALSRFEPDDALRILERFAEADLRKVGNKSGFLAGIMRKYGSTLQATAP 1169
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: A0A7S2AI36_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AI36_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.710e-7
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   16 ALDESVRGRL-----EGLVRPDELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRK 204
            AL   +R RL     EGL+  DEL  +E++ LG   + DA++ +  FAEADL+ + N+SG LAGIMR+
Sbjct:   74 ALPSKIRARLDALCNEGLLGQDELAVYELQTLGTLGLDDALEAVRCFAEADLQTIGNKSGLLAGIMRR 141
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: A0A7S1HRM5_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HRM5_9EUGL)

HSP 1 Score: 52.8 bits (125), Expect = 2.200e-5
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   46 EGLVRPDELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRKHGS 213
            +G V  DELDP  + +L +F       IL++F EADL R+ N++GF+AGIMR+  S
Sbjct:  113 QGTVGRDELDPRILESLAQFPADVGESILEKFLEADLSRITNKNGFMAGIMRRFRS 168
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.350e-5
Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1 
Query:    7 AVAALDESVRGRLEGLVRP-----DELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRK 204
            A++ +   VR  LE LVR      +ELD FE+ AL   E+   + ++  F E+DLR+  N+SG LAGI+R+
Sbjct:  965 ALSGMLPQVREALEALVRQRLVKLEELDTFELTALAALELEQGLQVVAAFGESDLRKAGNKSGMLAGILRR 1035
[Close]
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Match: A0A7S0LZI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZI5_9CRYP)

HSP 1 Score: 52.0 bits (123), Expect = 5.250e-5
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   28 SVRGRLEGLV-----RPDELDPFEVRALGKFEVADAMDILDRFAEADLRRVRNRSGFLAGIMRK 204
            SVR RLE L      R DE+D   +++L +F  A A+ IL  F EAD+  +RN+S FLAG+M++
Sbjct:   96 SVRERLEALFASGKCRRDEIDFKIMQSLSEFSEASALQILINFGEADMSSIRNKSAFLAGVMKR 159
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8355.16533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHP2_ECTSI6.250e-3087.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCK8_9STRA7.410e-1555.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2AI36_9STRA4.710e-745.59Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1HRM5_9EUGL2.200e-546.43Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6U1AHC6_9STRA3.350e-540.85Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0LZI5_9CRYP5.250e-545.31Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8355contigS-dermatodea_contig8355:1739..2936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue2.5e-26
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size430
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925337.7113647-CDS-S-dermatodea_contig8355:1738..20301622925337.7113647-CDS-S-dermatodea_contig8355:1738..2030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 1739..2030 -
1694079865.0835826-CDS-S-dermatodea_contig8355:1738..20301694079865.0835826-CDS-S-dermatodea_contig8355:1738..2030Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 1739..2030 -
1622925337.7228618-CDS-S-dermatodea_contig8355:2799..29361622925337.7228618-CDS-S-dermatodea_contig8355:2799..2936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 2800..2936 -
1694079865.0963209-CDS-S-dermatodea_contig8355:2799..29361694079865.0963209-CDS-S-dermatodea_contig8355:2799..2936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8355 2800..2936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8355.16533.1prot_S-dermatodea_contig8355.16533.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8355 1739..2936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8355.16533.1

>prot_S-dermatodea_contig8355.16533.1 ID=prot_S-dermatodea_contig8355.16533.1|Name=mRNA_S-dermatodea_contig8355.16533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=143bp
AAAVAALDESVRGRLEGLVRPDELDPFEVRALGKFEVADAMDILDRFAEA
DLRRVRNRSGFLAGIMRKHGSAASTTKPTAAATTPLSTTTDDTAAGATPT
DAGTAAGAQAMTGERDAVTAAKVPQAEAGVVPPAPPTVAEEGN
back to top

mRNA from alignment at S-dermatodea_contig8355:1739..2936-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8355.16533.1 ID=mRNA_S-dermatodea_contig8355.16533.1|Name=mRNA_S-dermatodea_contig8355.16533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1198bp|location=Sequence derived from alignment at S-dermatodea_contig8355:1739..2936- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCCGTGGCCGCGCTGGACGAGAGCGTTCGCGGTCGGCTGGAAGG
GCTGGTCAGGCCCGACGAGCTAGACCCGTTCGAGGTCCGCGCGTTGGGAA
AGTTTGAGGTCGCTGACGCCATGGATATTCTTGACAGGTATAATGATACG
AGGAGAGAGAGACAGGCCTTCTTTTTTGTTTTTGTGTGTTTGTGTGTGTC
TGTGTGTGTGTTGCGTCGAAATACGTGTATACGTACATATATTGTGATGC
ACTGATGAGTTGAGTGTCATCTGTTTTGAGTATTACACCCTGTTGAATTT
AGTCCTGCAGCGTCTTGTCTGTGGACCACGCGCGGTCTTTTGGTTTCTGA
ACTTACACGTGTTAACGGGAGGAAGACCGTTTGGTATGTTCCTTGTGATG
TGCTTGCCTCCGCGTTGTCCTGCTAGACAGGGGTCAGGAGAGTGTAGTAG
GTGGGCCGCTTGAAATCAGGCCTTTTCATCCGGTGTATAATACGAGGCAC
CTCGAATTCTGCGATGCAGGACGTGCCCATCTGTGCGCCGTCCATAGAGT
GAAGGATAGTCCTCGGCCTTTCAAGTCATCACTGTGAATAGTGCGTTATT
TGCACGCCATGGGCCCATGAAAACCTATCGTGTGCGTATGCCGTAACATG
TGCAGCGGGTACAACGCACGGATGGGATCGCAGGATTGAAGACACACCTG
CTGCACACCGTATTTTCGGTGCACATTGCAGACAGACTCTATTACCTCCT
CGCCTTCCGCTTGCAACCGACCCCAACCCCCAGCCCACCCCCTCCCCTCC
CTTTCCACCCCTCCCCACGCCCGTCACATCAAACCATTTCGTGCACGGTG
ACAGAATTAACGCTTGCCCACTTCGCCCATGCATCGACGCGTCGCACGTG
TAACAGGTTCGCCGAGGCAGACCTCCGCCGGGTGCGCAACCGCAGCGGCT
TCCTGGCGGGTATCATGCGCAAGCACGGGTCCGCCGCTTCGACAACAAAA
CCAACGGCGGCAGCAACAACACCACTATCAACAACGACAGACGATACCGC
CGCCGGGGCAACGCCCACCGACGCAGGGACAGCAGCGGGCGCCCAAGCCA
TGACCGGGGAGAGGGATGCCGTGACTGCGGCGAAGGTTCCGCAGGCGGAG
GCGGGGGTGGTTCCGCCCGCTCCACCCACGGTGGCCGAGGAAGGCAAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8355:1739..2936-

>mRNA_S-dermatodea_contig8355.16533.1 ID=mRNA_S-dermatodea_contig8355.16533.1|Name=mRNA_S-dermatodea_contig8355.16533.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at S-dermatodea_contig8355:1739..2936- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCGGCCGTGGCCGCGCTGGACGAGAGCGTTCGCGGTCGGCTGGAAGG
GCTGGTCAGGCCCGACGAGCTAGACCCGTTCGAGGTCCGCGCGTTGGGAA
AGTTTGAGGTCGCTGACGCCATGGATATTCTTGACAGGCGGCGGCCGTGG
CCGCGCTGGACGAGAGCGTTCGCGGTCGGCTGGAAGGGCTGGTCAGGCCC
GACGAGCTAGACCCGTTCGAGGTCCGCGCGTTGGGAAAGTTTGAGGTCGC
TGACGCCATGGATATTCTTGACAGGTTCGCCGAGGCAGACCTCCGCCGGG
TGCGCAACCGCAGCGGCTTCCTGGCGGGTATCATGCGCAAGCACGGGTCC
GCCGCTTCGACAACAAAACCAACGGCGGCAGCAACAACACCACTATCAAC
AACGACAGACGATACCGCCGCCGGGGCAACGCCCACCGACGCAGGGACAG
CAGCGGGCGCCCAAGCCATGACCGGGGAGAGGGATGCCGTGACTGCGGCG
AAGGTTCCGCAGGCGGAGGCGGGGGTGGTTCCGCCCGCTCCACCCACGGT
GGCCGAGGAAGGCAACGTTCGCCGAGGCAGACCTCCGCCGGGTGCGCAAC
CGCAGCGGCTTCCTGGCGGGTATCATGCGCAAGCACGGGTCCGCCGCTTC
GACAACAAAACCAACGGCGGCAGCAACAACACCACTATCAACAACGACAG
ACGATACCGCCGCCGGGGCAACGCCCACCGACGCAGGGACAGCAGCGGGC
GCCCAAGCCATGACCGGGGAGAGGGATGCCGTGACTGCGGCGAAGGTTCC
GCAGGCGGAGGCGGGGGTGGTTCCGCCCGCTCCACCCACGGTGGCCGAGG
AAGGCAAC
back to top