mRNA_S-dermatodea_contig83515.16531.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.360e-22 Identity = 66/168 (39.29%), Postives = 92/168 (54.76%), Query Frame = 1
Query: 64 NSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL--EP---------PDVGLHVKVSGTSDEWHRRM 522
+S+ ++VDSGA+++Y D L PGLR + D L+VP TI AG H LKGVATG + + D G + V ++VPGLG NL SV A +GV T F + +E+ V P+Q G +YS +++L EP PD L +KV ++D W RRM
Sbjct: 243 SSIQMVVDSGATDNYLDPGLTPGLRAHMRDVERLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRGILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESRDVVFPMQTLGLDATTGKRIYSIEVKLGGEPGGPTVLGDAPDA-LALKVE-SADLWFRRM 408
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JWN9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN9_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.900e-21 Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 76 VLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG 420
++VDSGA+++Y D L PGLR + D L+VP TI AG H LKGVATG + + D G + V +++VPGLG NL SV A +GV T F + +E+G V P+Q G
Sbjct: 236 MVVDSGATDNYLDPGLTPGLRTHMRDVEYLRVPHTIVAAGQHVLKGVATGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLG 350
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.210e-17 Identity = 56/147 (38.10%), Postives = 75/147 (51.02%), Query Frame = 1
Query: 127 PGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL-----------EPPDVGLHVKVSGTSDEWHRRM 522
PGLR + D L+VP TI AG H LKGVATG + D G + V +++VPGL NL SV A +G T D +E+G VIP+Q G +YS +++L + PD L +KV ++D WHRRM
Sbjct: 452 PGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTFFGAVTDDNGTDRHVSFCVILVPGLSTNLFSVTLAMLKGEATLVHPDDPRLESGDVVIPMQTLGVDTTTGKRIYSIEVKLGGEAGGPMVLEDAPDA-LALKVE-SADLWHRRM 596
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 1.050e-16 Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query: 61 GNSLPVLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTF 360
G+S+ ++VDSGA++ Y L PGLR + D L+VP TI AG H LKGVATG + + D G + V +++VPGLG NL SV A +G T F
Sbjct: 249 GSSIRMVVDSGATDKYLHPWLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVATGTIFGAVRDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGAATLF 348
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 7.380e-13 Identity = 62/202 (30.69%), Postives = 95/202 (47.03%), Query Frame = 1
Query: 4 HTALTAGIKNVVNNHSIITGNSLPVLVDSGASEHY--FDDLLAPGLRDKLSDYTILQVPRTIT------------TAGNHELKGVATGILSETIVDSKGVKQAVGLPIVVVPGLGRNLLSVPAATARGVITTFAQQDSWIETGSFVIPLQQAG----GAHDLYSFKIEL--EP---------PDVGLHVKVSGTSDEWHRRM 522
HT + AG ++V+ + TG + + D +E + F +L PG L T+ + T AG H LKGVATG + + D G ++ V +++VPG G NL SV A +GV T F ++ +++G V P+Q G +YS +++L EP PD L +KV ++D WHR M
Sbjct: 254 HTIVAAG-QHVLK--GVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDXVAAGQHVLKGVATGTIVGAVTDDNGNERHVLFRVILVPGPGTNLFSVTLAMLKGVATLFHPDNTRLDSGDVVFPMQTLGVDATTGKRIYSIEVKLGREPGGPTVLGDAPDA-LALKVE-SADLWHRHM 450
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Match: A0A6H5JV98_9PHAE (Peptidase A2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV98_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 1.450e-10 Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 76 VLVDSGASEHYFDDLLAPGLRDKLSDYTILQVPRTITTAGNHELKGVATGILSETIVDSKG----VKQAVGLPIVVVPGLGRNLLSVPAATARGV 348
+L+D+GASE +D PGL++ + +Y L P ++ G+HE+ G+ATG++ + DS G KQA +VVPGLGRN+ S A GV
Sbjct: 298 LLIDTGASEKVLNDRFIPGLKETVWEYKNLAKPMAVSVGGDHEVDGIATGLIRCIVKDSNGDSDCEKQAALQRGLVVPGLGRNVFSPTAQIQNGV 392 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83515.16531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig83515.16531.1 >prot_S-dermatodea_contig83515.16531.1 ID=prot_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp EHTALTAGIKNVVNNHSIITGNSLPVLVDSGASEHYFDDLLAPGLRDKLSback to top mRNA from alignment at S-dermatodea_contig83515:206..727+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig83515.16531.1 ID=mRNA_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig83515:206..727+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig83515:206..727+ >mRNA_S-dermatodea_contig83515.16531.1 ID=mRNA_S-dermatodea_contig83515.16531.1|Name=mRNA_S-dermatodea_contig83515.16531.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig83515:206..727+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |